Gene annotation
Transcriptome id Sobic.003G379800.1
Synonym Sb03g041930
Functional annotation armadillo/beta-catenin repeat family protein, putative, expressed
UniProt C5XEM0
Pfam PF04564 PF00514
Panther DB PTHR23315 PTHR23315:SF117
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016567; protein ubiquitination GO:0004842ubiquitin-protein transferase activity GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT2G23140 : RING/U-box superfamily protein with ARM repeat domain
RAP-DB (Rice) LOC_Os01g66130.1 : armadillo/beta-catenin repeat family protein, putative, expressed
MaizeGDB (Corn) Zm00025a026545
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G143400 chitin-inducible gibberellin-responsive protein, putative, expressed -
2 Sobic.004G061200 expressed protein -
3 Sobic.003G393700 zinc finger, RING-type, putative, expressed -
4 Sobic.004G069200 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
5 Sobic.001G389000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@WRKY55, expressed -
6 Sobic.010G086200 GRAM domain containing protein, expressed -
7 Sobic.001G070800 expressed protein -
8 Sobic.002G393000 pyrrolidone-carboxylate peptidase, putative, expressed K01304: pyroglutamyl-peptidase
9 Sobic.009G159200 guanylyl cyclase, putative, expressed -
10 Sobic.004G321300 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
11 Sobic.001G247600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAD dependent epimerase/dehydratase family protein, putative, expressed K10046: GDP-D-mannose 3', 5'-epimerase
12 Sobic.002G282400 expressed protein -
13 Sobic.009G180000 OsCam1-3 - Calmodulin, expressed K02183: calmodulin
14 Sobic.001G009500 - -
15 Sobic.003G249800 60S ribosomal protein L18a-1, putative, expressed -
16 Sobic.002G046100 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
17 Sobic.004G075000 expressed protein -
18 Sobic.009G159400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@universal stress protein domain containing protein, putative, expressed -
19 Sobic.009G070400 expressed protein -
20 Sobic.009G077800 expressed protein -


Gene co-expression network
sample Sobic003G379800 Sobic003G379800 Sobic009G143400 Sobic009G143400 Sobic003G379800--Sobic009G143400 Sobic004G061200 Sobic004G061200 Sobic003G379800--Sobic004G061200 Sobic003G393700 Sobic003G393700 Sobic003G379800--Sobic003G393700 Sobic004G069200 Sobic004G069200 Sobic003G379800--Sobic004G069200 Sobic001G389000 Sobic001G389000 Sobic003G379800--Sobic001G389000 Sobic010G086200 Sobic010G086200 Sobic003G379800--Sobic010G086200 Sobic001G070800 Sobic001G070800 Sobic003G379800--Sobic001G070800 Sobic002G393000 Sobic002G393000 Sobic003G379800--Sobic002G393000 Sobic009G159200 Sobic009G159200 Sobic003G379800--Sobic009G159200 Sobic009G143400--Sobic010G086200 Sobic009G143400--Sobic003G393700 Sobic009G143400--Sobic004G061200 Sobic009G143400--Sobic003G379800 Sobic001G281400 Sobic001G281400 Sobic009G143400--Sobic001G281400 Sobic002G046100 Sobic002G046100 Sobic009G143400--Sobic002G046100 Sobic010G149300 Sobic010G149300 Sobic009G143400--Sobic010G149300 Sobic002G190900 Sobic002G190900 Sobic009G143400--Sobic002G190900 Sobic009G033700 Sobic009G033700 Sobic009G143400--Sobic009G033700 Sobic004G321300 Sobic004G321300 Sobic004G061200--Sobic004G321300 Sobic004G061200--Sobic002G393000 Sobic001G038900 Sobic001G038900 Sobic004G061200--Sobic001G038900 Sobic004G061200--Sobic003G393700 Sobic009G159400 Sobic009G159400 Sobic004G061200--Sobic009G159400 Sobic004G061200--Sobic010G086200 Sobic008G136400 Sobic008G136400 Sobic004G061200--Sobic008G136400 Sobic004G061200--Sobic009G143400 Sobic004G061200--Sobic002G046100 Sobic009G077800 Sobic009G077800 Sobic003G393700--Sobic009G077800 Sobic003G393700--Sobic001G070800 Sobic009G234100 Sobic009G234100 Sobic003G393700--Sobic009G234100 Sobic009G139400 Sobic009G139400 Sobic003G393700--Sobic009G139400 Sobic003G393700--Sobic004G321300 Sobic003G297600 Sobic003G297600 Sobic003G393700--Sobic003G297600 Sobic003G393700--Sobic002G393000 Sobic003G393700--Sobic004G061200 Sobic001G177800 Sobic001G177800 Sobic003G393700--Sobic001G177800 Sobic001G247600 Sobic001G247600 Sobic004G069200--Sobic001G247600 Sobic004G069200--Sobic003G379800 Sobic006G059700 Sobic006G059700 Sobic004G069200--Sobic006G059700 Sobic004G225900 Sobic004G225900 Sobic004G069200--Sobic004G225900 Sobic004G069200--Sobic001G070800 Sobic006G136800 Sobic006G136800 Sobic004G069200--Sobic006G136800 Sobic002G312900 Sobic002G312900 Sobic004G069200--Sobic002G312900 Sobic001G009500 Sobic001G009500 Sobic004G069200--Sobic001G009500 Sobic010G185000 Sobic010G185000 Sobic004G069200--Sobic010G185000 Sobic001G389000--Sobic009G159400 Sobic003G037800 Sobic003G037800 Sobic001G389000--Sobic003G037800 Sobic004G101300 Sobic004G101300 Sobic001G389000--Sobic004G101300 Sobic004G340900 Sobic004G340900 Sobic001G389000--Sobic004G340900 Sobic010G259600 Sobic010G259600 Sobic001G389000--Sobic010G259600 Sobic006G092500 Sobic006G092500 Sobic001G389000--Sobic006G092500 Sobic001G139100 Sobic001G139100 Sobic001G389000--Sobic001G139100 Sobic001G389000--Sobic001G038900 Sobic003G429000 Sobic003G429000 Sobic001G389000--Sobic003G429000 Sobic006G267200 Sobic006G267200 Sobic010G086200--Sobic006G267200 Sobic004G065500 Sobic004G065500 Sobic010G086200--Sobic004G065500 Sobic010G086200--Sobic004G321300 Sobic009G141800 Sobic009G141800 Sobic010G086200--Sobic009G141800 Sobic009G129000 Sobic009G129000 Sobic010G086200--Sobic009G129000 Sobic010G086200--Sobic009G143400 Sobic001G459800 Sobic001G459800 Sobic010G086200--Sobic001G459800 Sobic010G086200--Sobic009G033700 Sobic003G393900 Sobic003G393900 Sobic010G086200--Sobic003G393900 Sobic001G070800--Sobic003G297600 Sobic001G070800--Sobic009G077800 Sobic001G070800--Sobic003G393700 Sobic002G416600 Sobic002G416600 Sobic001G070800--Sobic002G416600 Sobic001G070800--Sobic009G139400 Sobic001G070800--Sobic001G177800 Sobic001G317200 Sobic001G317200 Sobic001G070800--Sobic001G317200 Sobic006G099900 Sobic006G099900 Sobic001G070800--Sobic006G099900 Sobic001G252300 Sobic001G252300 Sobic001G070800--Sobic001G252300 Sobic001G119400 Sobic001G119400 Sobic002G393000--Sobic001G119400 Sobic006G275200 Sobic006G275200 Sobic002G393000--Sobic006G275200 Sobic006G173900 Sobic006G173900 Sobic002G393000--Sobic006G173900 Sobic001G423800 Sobic001G423800 Sobic002G393000--Sobic001G423800 Sobic009G008900 Sobic009G008900 Sobic002G393000--Sobic009G008900 Sobic002G393000--Sobic008G136400 Sobic010G099900 Sobic010G099900 Sobic002G393000--Sobic010G099900 Sobic002G414600 Sobic002G414600 Sobic002G393000--Sobic002G414600 Sobic009G183400 Sobic009G183400 Sobic002G393000--Sobic009G183400 Sobic007G197600 Sobic007G197600 Sobic009G159200--Sobic007G197600 Sobic007G177100 Sobic007G177100 Sobic009G159200--Sobic007G177100 Sobic002G353800 Sobic002G353800 Sobic009G159200--Sobic002G353800 Sobic009G159200--Sobic001G070800 Sobic006G157500 Sobic006G157500 Sobic009G159200--Sobic006G157500 Sobic009G075900 Sobic009G075900 Sobic009G159200--Sobic009G075900 Sobic009G159200--Sobic003G379800 Sobic009G159200--Sobic003G393700 Sobic004G203700 Sobic004G203700 Sobic009G159200--Sobic004G203700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.