Gene annotation
Transcriptome id Sobic.009G180000.1
Synonym ACAM-2, Sb09g024040, CAM5
Functional annotation OsCam1-3 - Calmodulin, expressed
UniProt -
Pfam PF13499
Panther DB PTHR23050 PTHR23050:SF166
NCBI CDD KOG0027; Calmodulin and related proteins (EF-Hand superfamily)
KEGG Orthology K02183; calmodulin
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G27030 : calmodulin 5
RAP-DB (Rice) LOC_Os01g16240.1 : OsCam1-3 - Calmodulin, expressed
MaizeGDB (Corn) Zm00025a002229 , Zm00025a052528 , Zm00025a044073 , Zm00025a035250 , Zm00025a015474 , Zm00025a024000 , Zm00025a037833
Brachypodium KQK10249 , KQK10250 , KQK05657 , PNT70357 , KQK03947 , PNT74543 , PNT74544
Barley HORVU2Hr1G016740.4 , HORVU2Hr1G016740.1 , HORVU2Hr1G016740.3 , HORVU3Hr1G040040.1 , HORVU0Hr1G001270.2 , HORVU0Hr1G001270.3 , HORVU0Hr1G001270.1 , HORVU0Hr1G001270.4 , HORVU3Hr1G038010.5 , HORVU3Hr1G038010.4 , HORVU3Hr1G038010.7 , HORVU3Hr1G038010.6 , HORVU3Hr1G038010.1 , HORVU3Hr1G038010.3 , HORVU3Hr1G038010.2 , HORVU3Hr1G038010.9 , HORVU3Hr1G038010.8 , HORVU1Hr1G068420.1 , HORVU3Hr1G079210.4 , HORVU3Hr1G079210.7 , HORVU3Hr1G079210.8 , HORVU3Hr1G079210.9
Wheat TraesCS3A02G184500 , TraesCS3A02G335000 , TraesCS3B02G219900 , TraesCS3B02G219900 , TraesCS3D02G194500 , TraesCS2A02G098100 , TraesCS3D02G188600 , TraesCS3A02G191900 , TraesCS3B02G214400 , TraesCS1D02G308100 , TraesCS4B02G131100 , TraesCS2D02G097500 , TraesCS1B02G319400 , TraesCS2B02G113800 , TraesCS2B02G113800 , TraesCS3B02G365900 , TraesCS3B02G365900 , TraesCS3B02G365900 , TraesCS3D02G328300
Populus -


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cDNA sequences
Sobic.009G180000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G204500 peptidase, T1 family, putative, expressed K02735: 20S proteasome subunit beta 3
2 Sobic.007G018300 60S acidic ribosomal protein, putative, expressed K02942: RP-LP1, large subunit ribosomal protein LP1
3 Sobic.001G533500 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17777: mitochondrial import inner membrane translocase subunit TIM9
4 Sobic.001G016400 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
5 Sobic.001G483100 peptidase, T1 family, putative, expressed K02730: 20S proteasome subunit alpha 1
6 Sobic.003G125650 - K02183: calmodulin
7 Sobic.007G190800 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17780: mitochondrial import inner membrane translocase subunit TIM8
8 Sobic.010G230700 60S ribosomal protein L27-3, putative, expressed K02901: RP-L27e, large subunit ribosomal protein L27e
9 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
10 Sobic.001G403500 40S ribosomal protein S7, putative, expressed K02993: RP-S7e, small subunit ribosomal protein S7e
11 Sobic.002G263800 peptidase, T1 family, putative, expressed K02736: 20S proteasome subunit beta 7
12 Sobic.002G379500 40S ribosomal protein S6, putative, expressed K02991: RP-S6e, small subunit ribosomal protein S6e
13 Sobic.007G197800 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
14 Sobic.001G084900 expressed protein -
15 Sobic.001G018900 40S ribosomal protein S4, putative, expressed K02987: RP-S4e, small subunit ribosomal protein S4e
16 Sobic.006G116700 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
17 Sobic.005G019700 ribosomal protein, putative, expressed K02960: RP-S16e, small subunit ribosomal protein S16e
18 Sobic.001G036900 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
19 Sobic.002G330000 core histone H2A/H2B/H3/H4, putative, expressed K11251: histone H2A
20 Sobic.005G110800 - -


Gene co-expression network
sample Sobic009G180000 Sobic009G180000 Sobic010G204500 Sobic010G204500 Sobic009G180000--Sobic010G204500 Sobic007G018300 Sobic007G018300 Sobic009G180000--Sobic007G018300 Sobic001G533500 Sobic001G533500 Sobic009G180000--Sobic001G533500 Sobic001G016400 Sobic001G016400 Sobic009G180000--Sobic001G016400 Sobic001G483100 Sobic001G483100 Sobic009G180000--Sobic001G483100 Sobic003G125650 Sobic003G125650 Sobic009G180000--Sobic003G125650 Sobic007G190800 Sobic007G190800 Sobic009G180000--Sobic007G190800 Sobic010G230700 Sobic010G230700 Sobic009G180000--Sobic010G230700 Sobic009G050300 Sobic009G050300 Sobic009G180000--Sobic009G050300 Sobic001G403500 Sobic001G403500 Sobic010G204500--Sobic001G403500 Sobic010G204500--Sobic001G483100 Sobic010G204500--Sobic001G016400 Sobic010G204500--Sobic009G050300 Sobic010G204500--Sobic009G180000 Sobic002G056200 Sobic002G056200 Sobic010G204500--Sobic002G056200 Sobic002G081600 Sobic002G081600 Sobic010G204500--Sobic002G081600 Sobic009G215200 Sobic009G215200 Sobic010G204500--Sobic009G215200 Sobic001G018900 Sobic001G018900 Sobic010G204500--Sobic001G018900 Sobic007G018300--Sobic010G230700 Sobic005G019700 Sobic005G019700 Sobic007G018300--Sobic005G019700 Sobic007G018300--Sobic009G215200 Sobic007G018300--Sobic009G050300 Sobic006G116700 Sobic006G116700 Sobic007G018300--Sobic006G116700 Sobic007G018300--Sobic001G016400 Sobic007G019000 Sobic007G019000 Sobic007G018300--Sobic007G019000 Sobic007G197800 Sobic007G197800 Sobic007G018300--Sobic007G197800 Sobic001G054900 Sobic001G054900 Sobic007G018300--Sobic001G054900 Sobic001G533500--Sobic007G019000 Sobic001G533500--Sobic007G018300 Sobic001G533500--Sobic010G230700 Sobic001G533500--Sobic001G054900 Sobic001G533500--Sobic009G050300 Sobic007G178600 Sobic007G178600 Sobic001G533500--Sobic007G178600 Sobic001G533500--Sobic006G116700 Sobic004G104100 Sobic004G104100 Sobic001G533500--Sobic004G104100 Sobic004G008400 Sobic004G008400 Sobic001G533500--Sobic004G008400 Sobic001G016400--Sobic009G050300 Sobic001G016400--Sobic009G215200 Sobic001G016400--Sobic001G018900 Sobic001G016400--Sobic006G116700 Sobic001G016400--Sobic007G197800 Sobic001G402050 Sobic001G402050 Sobic001G016400--Sobic001G402050 Sobic001G016400--Sobic007G018300 Sobic001G016400--Sobic001G403500 Sobic001G016400--Sobic002G081600 Sobic001G483100--Sobic010G204500 Sobic001G483100--Sobic009G180000 Sobic001G014500 Sobic001G014500 Sobic001G483100--Sobic001G014500 Sobic001G483100--Sobic002G056200 Sobic003G249700 Sobic003G249700 Sobic001G483100--Sobic003G249700 Sobic005G229300 Sobic005G229300 Sobic001G483100--Sobic005G229300 Sobic002G379500 Sobic002G379500 Sobic001G483100--Sobic002G379500 Sobic001G537200 Sobic001G537200 Sobic001G483100--Sobic001G537200 Sobic003G109600 Sobic003G109600 Sobic001G483100--Sobic003G109600 Sobic003G125650--Sobic007G197800 Sobic001G130301 Sobic001G130301 Sobic003G125650--Sobic001G130301 Sobic003G125650--Sobic001G018900 Sobic003G125650--Sobic001G402050 Sobic001G390300 Sobic001G390300 Sobic003G125650--Sobic001G390300 Sobic003G125650--Sobic006G116700 Sobic001G493001 Sobic001G493001 Sobic003G125650--Sobic001G493001 Sobic002G200600 Sobic002G200600 Sobic003G125650--Sobic002G200600 Sobic003G125650--Sobic009G050300 Sobic007G190800--Sobic010G230700 Sobic007G190800--Sobic005G019700 Sobic007G190800--Sobic004G104100 Sobic007G190800--Sobic009G050300 Sobic004G104300 Sobic004G104300 Sobic007G190800--Sobic004G104300 Sobic007G190800--Sobic007G019000 Sobic007G190800--Sobic007G018300 Sobic007G212600 Sobic007G212600 Sobic007G190800--Sobic007G212600 Sobic007G190800--Sobic001G403500 Sobic010G230700--Sobic005G019700 Sobic010G230700--Sobic007G018300 Sobic010G230700--Sobic004G104100 Sobic009G054800 Sobic009G054800 Sobic010G230700--Sobic009G054800 Sobic006G221200 Sobic006G221200 Sobic010G230700--Sobic006G221200 Sobic010G230700--Sobic009G050300 Sobic001G091801 Sobic001G091801 Sobic010G230700--Sobic001G091801 Sobic010G230700--Sobic007G019000 Sobic002G372400 Sobic002G372400 Sobic010G230700--Sobic002G372400 Sobic009G050300--Sobic006G116700 Sobic009G050300--Sobic004G008400 Sobic009G050300--Sobic007G197800 Sobic009G050300--Sobic002G081600 Sobic003G346600 Sobic003G346600 Sobic009G050300--Sobic003G346600 Sobic009G050300--Sobic009G215200 Sobic009G050300--Sobic001G403500 Sobic009G050300--Sobic001G018900 Sobic009G050300--Sobic002G379500
Octagon: transcription factors


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