Gene annotation
Transcriptome id Sobic.001G372100.1
Synonym BMY3, BAM9, Sb01g035370
Functional annotation beta-amylase 3 (PubMedID : 26465154)
beta-amylase 3 (PubMedID : 26465154)
beta-amylase, putative, expressed
UniProt C5WZT1
Pfam PF01373
Panther DB PTHR31352 PTHR31352:SF12
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016161; beta-amylase activity GO:0000272polysaccharide catabolic process


Orthologs (automatic annotation)
TAIR AT5G18670 : beta-amylase 3
RAP-DB (Rice) LOC_Os03g22790.1 : beta-amylase, putative, expressed
MaizeGDB (Corn) Zm00025a052378 , Zm00025a049081 , Zm00025a002470 , Zm00025a000569
Brachypodium KQJ97853 , KQK21683
Barley HORVU1Hr1G055140.1 , HORVU1Hr1G055140.2 , HORVU4Hr1G084390.1 , HORVU2Hr1G020970.2 , HORVU2Hr1G020970.3 , HORVU2Hr1G020970.1 , HORVU2Hr1G020970.6 , HORVU2Hr1G020970.7 , HORVU2Hr1G020970.4 , HORVU2Hr1G020970.5
Wheat TraesCS1B02G229000 , TraesCS2A02G120800 , TraesCS4B02G344300 , TraesCS1A02G215500 , TraesCS1D02G218000 , TraesCS2B02G141700 , TraesCS5A02G513200 , TraesCS4D02G339400
Populus -


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cDNA sequences
Sobic.001G372100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G168900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed -
2 Sobic.006G157500 zinc finger, C3HC4 type domain containing protein, expressed K10666: E3 ubiquitin-protein ligase RNF5
3 Sobic.001G112200 LTPL118 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
4 Sobic.001G138600 VQ domain containing protein, putative, expressed -
5 Sobic.001G318700 glutathione S-transferase GSTU6, putative, expressed K00799: GST, glutathione S-transferase
6 Sobic.009G184000 ICE-like protease p20 domain containing protein, putative, expressed -
7 Sobic.003G369100 AP2 domain containing protein, expressed -
8 Sobic.003G260300 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
9 Sobic.003G362700 cytochrome P450, putative, expressed -
10 Sobic.002G353800 homeobox domain containing protein, expressed K09338: homeobox-leucine zipper protein
11 Sobic.001G477600 zinc finger protein, putative, expressed -
12 Sobic.004G141200 cytochrome P450, putative, expressed K00487: trans-cinnamate 4-monooxygenase
13 Sobic.001G310600 expressed protein -
14 Sobic.003G303100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@dynein light chain type 1 domain containing protein, expressed K10418: dynein light chain LC8-type
15 Sobic.007G169700 inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed K01240: uridine nucleosidase
16 Sobic.002G336600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@nucleoside transporter, putative, expressed K15014: SLC29A1_2_3, solute carrier family 29 (equilibrative nucleoside transporter), member 1/2/3
17 Sobic.001G079300 helix-loop-helix DNA-binding domain containing protein, expressed -
18 Sobic.005G099000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed -
19 Sobic.003G064200 MYB family transcription factor, putative, expressed -
20 Sobic.009G151600 AP2 domain containing protein, expressed -


Gene co-expression network
sample Sobic001G372100 Sobic001G372100 Sobic009G168900 Sobic009G168900 Sobic001G372100--Sobic009G168900 Sobic006G157500 Sobic006G157500 Sobic001G372100--Sobic006G157500 Sobic001G112200 Sobic001G112200 Sobic001G372100--Sobic001G112200 Sobic001G138600 Sobic001G138600 Sobic001G372100--Sobic001G138600 Sobic001G318700 Sobic001G318700 Sobic001G372100--Sobic001G318700 Sobic009G184000 Sobic009G184000 Sobic001G372100--Sobic009G184000 Sobic003G369100 Sobic003G369100 Sobic001G372100--Sobic003G369100 Sobic003G260300 Sobic003G260300 Sobic001G372100--Sobic003G260300 Sobic003G362700 Sobic003G362700 Sobic001G372100--Sobic003G362700 Sobic009G168900--Sobic006G157500 Sobic009G168900--Sobic009G184000 Sobic009G168900--Sobic001G318700 Sobic009G168900--Sobic001G112200 Sobic009G168900--Sobic003G260300 Sobic003G303100 Sobic003G303100 Sobic009G168900--Sobic003G303100 Sobic009G168900--Sobic001G372100 Sobic001G502400 Sobic001G502400 Sobic009G168900--Sobic001G502400 Sobic001G310600 Sobic001G310600 Sobic009G168900--Sobic001G310600 Sobic006G157500--Sobic009G168900 Sobic003G265200 Sobic003G265200 Sobic006G157500--Sobic003G265200 Sobic002G339100 Sobic002G339100 Sobic006G157500--Sobic002G339100 Sobic006G157500--Sobic003G260300 Sobic001G477600 Sobic001G477600 Sobic006G157500--Sobic001G477600 Sobic006G157500--Sobic001G318700 Sobic006G157500--Sobic009G184000 Sobic004G109900 Sobic004G109900 Sobic006G157500--Sobic004G109900 Sobic006G157500--Sobic001G112200 Sobic001G112200--Sobic009G184000 Sobic001G112200--Sobic001G318700 Sobic001G112200--Sobic001G138600 Sobic001G112200--Sobic003G369100 Sobic007G169700 Sobic007G169700 Sobic001G112200--Sobic007G169700 Sobic004G237800 Sobic004G237800 Sobic001G112200--Sobic004G237800 Sobic009G145700 Sobic009G145700 Sobic001G112200--Sobic009G145700 Sobic007G074000 Sobic007G074000 Sobic001G112200--Sobic007G074000 Sobic001G112200--Sobic001G310600 Sobic003G382800 Sobic003G382800 Sobic001G138600--Sobic003G382800 Sobic001G138600--Sobic001G112200 Sobic004G141200 Sobic004G141200 Sobic001G138600--Sobic004G141200 Sobic001G138600--Sobic003G369100 Sobic001G138600--Sobic009G184000 Sobic001G079300 Sobic001G079300 Sobic001G138600--Sobic001G079300 Sobic001G138600--Sobic007G074000 Sobic001G459800 Sobic001G459800 Sobic001G138600--Sobic001G459800 Sobic001G391500 Sobic001G391500 Sobic001G138600--Sobic001G391500 Sobic001G318700--Sobic001G112200 Sobic001G018300 Sobic001G018300 Sobic001G318700--Sobic001G018300 Sobic004G243100 Sobic004G243100 Sobic001G318700--Sobic004G243100 Sobic002G192000 Sobic002G192000 Sobic001G318700--Sobic002G192000 Sobic001G318700--Sobic003G303100 Sobic002G251000 Sobic002G251000 Sobic001G318700--Sobic002G251000 Sobic001G140900 Sobic001G140900 Sobic001G318700--Sobic001G140900 Sobic006G075400 Sobic006G075400 Sobic001G318700--Sobic006G075400 Sobic001G481100 Sobic001G481100 Sobic001G318700--Sobic001G481100 Sobic009G184000--Sobic001G112200 Sobic009G184000--Sobic007G169700 Sobic006G235100 Sobic006G235100 Sobic009G184000--Sobic006G235100 Sobic009G184000--Sobic001G502400 Sobic003G228900 Sobic003G228900 Sobic009G184000--Sobic003G228900 Sobic003G432700 Sobic003G432700 Sobic009G184000--Sobic003G432700 Sobic009G184000--Sobic001G138600 Sobic008G066401 Sobic008G066401 Sobic009G184000--Sobic008G066401 Sobic002G189100 Sobic002G189100 Sobic009G184000--Sobic002G189100 Sobic003G369100--Sobic004G141200 Sobic003G369100--Sobic007G074000 Sobic003G369100--Sobic001G138600 Sobic001G108200 Sobic001G108200 Sobic003G369100--Sobic001G108200 Sobic003G369100--Sobic001G140900 Sobic003G369100--Sobic001G112200 Sobic003G345100 Sobic003G345100 Sobic003G369100--Sobic003G345100 Sobic008G050600 Sobic008G050600 Sobic003G369100--Sobic008G050600 Sobic001G308300 Sobic001G308300 Sobic003G369100--Sobic001G308300 Sobic003G260300--Sobic003G228900 Sobic003G260300--Sobic001G079300 Sobic004G191400 Sobic004G191400 Sobic003G260300--Sobic004G191400 Sobic003G260300--Sobic006G075400 Sobic003G260300--Sobic003G432700 Sobic003G260300--Sobic001G502400 Sobic003G260300--Sobic009G184000 Sobic004G191300 Sobic004G191300 Sobic003G260300--Sobic004G191300 Sobic001G195200 Sobic001G195200 Sobic003G260300--Sobic001G195200 Sobic003G362700--Sobic008G066401 Sobic003G362700--Sobic009G184000 Sobic003G362700--Sobic002G189100 Sobic003G362700--Sobic001G112200 Sobic010G209200 Sobic010G209200 Sobic003G362700--Sobic010G209200 Sobic003G362700--Sobic007G169700 Sobic003G362700--Sobic001G138600 Sobic003G362700--Sobic009G145700 Sobic003G142300 Sobic003G142300 Sobic003G362700--Sobic003G142300
Octagon: transcription factors


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