Gene annotation
Transcriptome id Sobic.009G168900.1
Synonym Sb09g023050
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5YZE4
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF136
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G11110 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os05g39260.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a043943 , Zm00025a037765
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G157500 zinc finger, C3HC4 type domain containing protein, expressed K10666: E3 ubiquitin-protein ligase RNF5
2 Sobic.009G184000 ICE-like protease p20 domain containing protein, putative, expressed -
3 Sobic.001G318700 glutathione S-transferase GSTU6, putative, expressed K00799: GST, glutathione S-transferase
4 Sobic.001G112200 LTPL118 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
5 Sobic.003G260300 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
6 Sobic.003G303100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@dynein light chain type 1 domain containing protein, expressed K10418: dynein light chain LC8-type
7 Sobic.001G372100 beta-amylase 3(PubMedID : 26465154)@beta-amylase 3(PubMedID : 26465154)@beta-amylase, putative, expressed -
8 Sobic.001G502400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@RING-H2 finger protein ATL3F, putative, expressed -
9 Sobic.001G310600 expressed protein -
10 Sobic.003G064200 MYB family transcription factor, putative, expressed -
11 Sobic.007G169700 inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed K01240: uridine nucleosidase
12 Sobic.003G043600 BAHD acyl transferase(PubMedID : 28944535)@transferase family protein, putative, expressed -
13 Sobic.001G138600 VQ domain containing protein, putative, expressed -
14 Sobic.003G228900 cytochrome P450 72A1, putative, expressed -
15 Sobic.002G336600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@nucleoside transporter, putative, expressed K15014: SLC29A1_2_3, solute carrier family 29 (equilibrative nucleoside transporter), member 1/2/3
16 Sobic.006G235100 expressed protein -
17 Sobic.003G265200 B3 DNA binding domain containing protein, expressed K09287: RAV-like factor
18 Sobic.005G107900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein O-methyltransferase ZRP4 (Zm)(PubMedID : 27208977)@O-methyltransferase, putative, expressed -
19 Sobic.001G477600 zinc finger protein, putative, expressed -
20 Sobic.008G139600 lectin-like receptor kinase, putative, expressed -


Gene co-expression network
sample Sobic009G168900 Sobic009G168900 Sobic006G157500 Sobic006G157500 Sobic009G168900--Sobic006G157500 Sobic009G184000 Sobic009G184000 Sobic009G168900--Sobic009G184000 Sobic001G318700 Sobic001G318700 Sobic009G168900--Sobic001G318700 Sobic001G112200 Sobic001G112200 Sobic009G168900--Sobic001G112200 Sobic003G260300 Sobic003G260300 Sobic009G168900--Sobic003G260300 Sobic003G303100 Sobic003G303100 Sobic009G168900--Sobic003G303100 Sobic001G372100 Sobic001G372100 Sobic009G168900--Sobic001G372100 Sobic001G502400 Sobic001G502400 Sobic009G168900--Sobic001G502400 Sobic001G310600 Sobic001G310600 Sobic009G168900--Sobic001G310600 Sobic006G157500--Sobic009G168900 Sobic003G265200 Sobic003G265200 Sobic006G157500--Sobic003G265200 Sobic002G339100 Sobic002G339100 Sobic006G157500--Sobic002G339100 Sobic006G157500--Sobic003G260300 Sobic001G477600 Sobic001G477600 Sobic006G157500--Sobic001G477600 Sobic006G157500--Sobic001G318700 Sobic006G157500--Sobic009G184000 Sobic004G109900 Sobic004G109900 Sobic006G157500--Sobic004G109900 Sobic006G157500--Sobic001G112200 Sobic009G184000--Sobic001G112200 Sobic007G169700 Sobic007G169700 Sobic009G184000--Sobic007G169700 Sobic006G235100 Sobic006G235100 Sobic009G184000--Sobic006G235100 Sobic009G184000--Sobic001G502400 Sobic003G228900 Sobic003G228900 Sobic009G184000--Sobic003G228900 Sobic003G432700 Sobic003G432700 Sobic009G184000--Sobic003G432700 Sobic001G138600 Sobic001G138600 Sobic009G184000--Sobic001G138600 Sobic008G066401 Sobic008G066401 Sobic009G184000--Sobic008G066401 Sobic002G189100 Sobic002G189100 Sobic009G184000--Sobic002G189100 Sobic001G318700--Sobic001G112200 Sobic001G018300 Sobic001G018300 Sobic001G318700--Sobic001G018300 Sobic004G243100 Sobic004G243100 Sobic001G318700--Sobic004G243100 Sobic002G192000 Sobic002G192000 Sobic001G318700--Sobic002G192000 Sobic001G318700--Sobic003G303100 Sobic002G251000 Sobic002G251000 Sobic001G318700--Sobic002G251000 Sobic001G140900 Sobic001G140900 Sobic001G318700--Sobic001G140900 Sobic006G075400 Sobic006G075400 Sobic001G318700--Sobic006G075400 Sobic001G481100 Sobic001G481100 Sobic001G318700--Sobic001G481100 Sobic001G112200--Sobic009G184000 Sobic001G112200--Sobic001G318700 Sobic001G112200--Sobic001G138600 Sobic003G369100 Sobic003G369100 Sobic001G112200--Sobic003G369100 Sobic001G112200--Sobic007G169700 Sobic004G237800 Sobic004G237800 Sobic001G112200--Sobic004G237800 Sobic009G145700 Sobic009G145700 Sobic001G112200--Sobic009G145700 Sobic007G074000 Sobic007G074000 Sobic001G112200--Sobic007G074000 Sobic001G112200--Sobic001G310600 Sobic003G260300--Sobic003G228900 Sobic001G079300 Sobic001G079300 Sobic003G260300--Sobic001G079300 Sobic004G191400 Sobic004G191400 Sobic003G260300--Sobic004G191400 Sobic003G260300--Sobic006G075400 Sobic003G260300--Sobic003G432700 Sobic003G260300--Sobic001G502400 Sobic003G260300--Sobic009G184000 Sobic004G191300 Sobic004G191300 Sobic003G260300--Sobic004G191300 Sobic001G195200 Sobic001G195200 Sobic003G260300--Sobic001G195200 Sobic002G055700 Sobic002G055700 Sobic003G303100--Sobic002G055700 Sobic003G303100--Sobic001G318700 Sobic004G189400 Sobic004G189400 Sobic003G303100--Sobic004G189400 Sobic003G382600 Sobic003G382600 Sobic003G303100--Sobic003G382600 Sobic003G303100--Sobic004G237800 Sobic003G426400 Sobic003G426400 Sobic003G303100--Sobic003G426400 Sobic004G148200 Sobic004G148200 Sobic003G303100--Sobic004G148200 Sobic005G029200 Sobic005G029200 Sobic003G303100--Sobic005G029200 Sobic005G063100 Sobic005G063100 Sobic003G303100--Sobic005G063100 Sobic001G372100--Sobic009G168900 Sobic001G372100--Sobic006G157500 Sobic001G372100--Sobic001G112200 Sobic001G372100--Sobic001G138600 Sobic001G372100--Sobic001G318700 Sobic001G372100--Sobic009G184000 Sobic001G372100--Sobic003G369100 Sobic001G372100--Sobic003G260300 Sobic003G362700 Sobic003G362700 Sobic001G372100--Sobic003G362700 Sobic005G107900 Sobic005G107900 Sobic001G502400--Sobic005G107900 Sobic001G313600 Sobic001G313600 Sobic001G502400--Sobic001G313600 Sobic001G502400--Sobic006G235100 Sobic001G502400--Sobic003G432700 Sobic001G502400--Sobic009G184000 Sobic001G502400--Sobic006G075400 Sobic009G188000 Sobic009G188000 Sobic001G502400--Sobic009G188000 Sobic005G011300 Sobic005G011300 Sobic001G502400--Sobic005G011300 Sobic006G007900 Sobic006G007900 Sobic001G502400--Sobic006G007900 Sobic003G442100 Sobic003G442100 Sobic001G310600--Sobic003G442100 Sobic003G043600 Sobic003G043600 Sobic001G310600--Sobic003G043600 Sobic001G310600--Sobic001G112200 Sobic001G310600--Sobic006G075400 Sobic001G310600--Sobic001G502400 Sobic001G310600--Sobic001G318700 Sobic002G336600 Sobic002G336600 Sobic001G310600--Sobic002G336600 Sobic001G310600--Sobic009G184000 Sobic001G310600--Sobic001G079300
Octagon: transcription factors


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