Gene annotation
Transcriptome id Sobic.003G265200.1
Synonym EDF4, RAV1, Sb03g031860
Functional annotation B3 DNA binding domain containing protein, expressed
UniProt C5XHG3
Pfam PF00847 PF02362
Panther DB PTHR31140 PTHR31140:SF18
NCBI CDD -
KEGG Orthology K09287; RAV-like factor
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT1G68840 : related to ABI3/VP1 2
RAP-DB (Rice) LOC_Os01g49830.1 : B3 DNA binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a044450 , Zm00025a033527 , Zm00025a032333 , Zm00025a027935 , Zm00025a038878 , Zm00025a041171 , Zm00025a036522 , Zm00025a010076 , Zm00025a023512 , Zm00025a021537 , Zm00025a000291 , Zm00025a056681 , Zm00025a000289 , Zm00025a000286 , Zm00025a000288 , Zm00025a053927
Brachypodium KQJ89377 , KQK02618 , KQK02619 , KQJ84190 , PNT69241 , PNT61705 , KQK05045 , KQK23932 , KQJ92192 , KQK00795 , KQK20030 , KQK02620 , KQK09293
Barley HORVU4Hr1G084950.1 , HORVU4Hr1G084950.2 , HORVU4Hr1G084950.3 , HORVU5Hr1G040620.3 , HORVU5Hr1G040620.2 , HORVU5Hr1G040620.1 , HORVU5Hr1G040620.4 , HORVU3Hr1G010140.2 , HORVU3Hr1G010190.2 , HORVU3Hr1G010190.3 , HORVU3Hr1G010190.1 , HORVU3Hr1G010190.6 , HORVU3Hr1G010190.4 , HORVU3Hr1G010190.5 , HORVU4Hr1G021650.21 , HORVU4Hr1G021650.20 , HORVU4Hr1G021650.22 , HORVU3Hr1G064640.1 , HORVU3Hr1G064640.3 , HORVU3Hr1G064640.2 , HORVU3Hr1G064640.5 , HORVU3Hr1G064640.4 , HORVU3Hr1G064640.7 , HORVU3Hr1G064640.6 , HORVU3Hr1G064640.8 , HORVU1Hr1G082670.10 , HORVU3Hr1G010240.2 , HORVU3Hr1G010240.1 , HORVU5Hr1G040620.5 , HORVU7Hr1G046950.1 , HORVU4Hr1G074300.2 , HORVU4Hr1G074300.3 , HORVU4Hr1G074300.1 , HORVU4Hr1G074300.6 , HORVU4Hr1G074300.4 , HORVU4Hr1G074300.5 , HORVU3Hr1G064590.1 , HORVU3Hr1G010060.2 , HORVU3Hr1G010060.1 , HORVU4Hr1G082090.2 , HORVU1Hr1G082670.8 , HORVU1Hr1G082670.9 , HORVU1Hr1G082670.6 , HORVU1Hr1G082670.7 , HORVU1Hr1G082670.4 , HORVU1Hr1G082670.5 , HORVU1Hr1G082670.2 , HORVU1Hr1G082670.3 , HORVU1Hr1G082670.1 , HORVU4Hr1G021650.7 , HORVU1Hr1G051780.2 , HORVU4Hr1G021650.8 , HORVU3Hr1G010140.5 , HORVU3Hr1G010140.4 , HORVU3Hr1G010140.1 , HORVU3Hr1G010140.3 , HORVU3Hr1G010200.1 , HORVU4Hr1G021650.18 , HORVU4Hr1G021650.19 , HORVU4Hr1G021650.14 , HORVU4Hr1G021650.15 , HORVU4Hr1G021650.16 , HORVU4Hr1G021650.17 , HORVU3Hr1G010260.4 , HORVU3Hr1G010260.5 , HORVU3Hr1G010260.1 , HORVU3Hr1G010260.2 , HORVU3Hr1G010260.3 , HORVU6Hr1G066190.2 , HORVU6Hr1G066190.1 , HORVU4Hr1G082090.3 , HORVU4Hr1G082090.1 , HORVU4Hr1G082090.4 , HORVU3Hr1G010100.1 , HORVU3Hr1G010100.2
Wheat TraesCS2A02G460700 , TraesCS2D02G460900 , TraesCS4B02G117100 , TraesCSU02G227200 , TraesCSU02G231000 , TraesCS4D02G114900 , TraesCS5B02G126200 , TraesCS3D02G260100 , TraesCS7D02G022400 , TraesCS5A02G127100 , TraesCS4A02G464900 , TraesCS7A02G020800 , TraesCS4D02G348900 , TraesCS4D02G348900 , TraesCS4A02G198300 , TraesCS4A02G198300 , TraesCS5A02G524700 , TraesCS5A02G524700 , TraesCS5D02G134700
Populus -


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cDNA sequences
Sobic.003G265200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G157500 zinc finger, C3HC4 type domain containing protein, expressed K10666: E3 ubiquitin-protein ligase RNF5
2 Sobic.003G260300 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
3 Sobic.002G328400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@TKL_IRAK_DUF26-lc.15 - DUF26 kinases have homology to DUF26 containing loci, expressed -
4 Sobic.001G431500 gibberellin receptor GID1L2, putative, expressed -
5 Sobic.002G336600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@nucleoside transporter, putative, expressed K15014: SLC29A1_2_3, solute carrier family 29 (equilibrative nucleoside transporter), member 1/2/3
6 Sobic.001G259900 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
7 Sobic.009G184000 ICE-like protease p20 domain containing protein, putative, expressed -
8 Sobic.003G228900 cytochrome P450 72A1, putative, expressed -
9 Sobic.003G043600 BAHD acyl transferase(PubMedID : 28944535)@transferase family protein, putative, expressed -
10 Sobic.003G442100 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@dehydration-responsive element-binding protein, putative, expressed -
11 Sobic.009G168900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed -
12 Sobic.004G191400 - -
13 Sobic.001G481100 DUF581 domain containing protein, expressed -
14 Sobic.006G075400 U-box domain-containing protein, putative, expressed -
15 Sobic.002G339100 similar to Putative organic cation transporter(PubMedID : 24655390)@similar to Putative organic cation transporter(PubMedID : 24655390)@organic cation transporter-related, putative, expressed -
16 Sobic.001G318700 glutathione S-transferase GSTU6, putative, expressed K00799: GST, glutathione S-transferase
17 Sobic.001G079300 helix-loop-helix DNA-binding domain containing protein, expressed -
18 Sobic.001G477600 zinc finger protein, putative, expressed -
19 Sobic.001G502400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@RING-H2 finger protein ATL3F, putative, expressed -
20 Sobic.002G189100 beta-glucan-binding protein 4, putative, expressed K01180: endo-1,3(4)-beta-glucanase


Gene co-expression network
sample Sobic003G265200 Sobic003G265200 Sobic006G157500 Sobic006G157500 Sobic003G265200--Sobic006G157500 Sobic003G260300 Sobic003G260300 Sobic003G265200--Sobic003G260300 Sobic002G328400 Sobic002G328400 Sobic003G265200--Sobic002G328400 Sobic001G431500 Sobic001G431500 Sobic003G265200--Sobic001G431500 Sobic002G336600 Sobic002G336600 Sobic003G265200--Sobic002G336600 Sobic001G259900 Sobic001G259900 Sobic003G265200--Sobic001G259900 Sobic009G184000 Sobic009G184000 Sobic003G265200--Sobic009G184000 Sobic003G228900 Sobic003G228900 Sobic003G265200--Sobic003G228900 Sobic003G043600 Sobic003G043600 Sobic003G265200--Sobic003G043600 Sobic009G168900 Sobic009G168900 Sobic006G157500--Sobic009G168900 Sobic006G157500--Sobic003G265200 Sobic002G339100 Sobic002G339100 Sobic006G157500--Sobic002G339100 Sobic006G157500--Sobic003G260300 Sobic001G477600 Sobic001G477600 Sobic006G157500--Sobic001G477600 Sobic001G318700 Sobic001G318700 Sobic006G157500--Sobic001G318700 Sobic006G157500--Sobic009G184000 Sobic004G109900 Sobic004G109900 Sobic006G157500--Sobic004G109900 Sobic001G112200 Sobic001G112200 Sobic006G157500--Sobic001G112200 Sobic003G260300--Sobic003G228900 Sobic001G079300 Sobic001G079300 Sobic003G260300--Sobic001G079300 Sobic004G191400 Sobic004G191400 Sobic003G260300--Sobic004G191400 Sobic006G075400 Sobic006G075400 Sobic003G260300--Sobic006G075400 Sobic003G432700 Sobic003G432700 Sobic003G260300--Sobic003G432700 Sobic001G502400 Sobic001G502400 Sobic003G260300--Sobic001G502400 Sobic003G260300--Sobic009G184000 Sobic004G191300 Sobic004G191300 Sobic003G260300--Sobic004G191300 Sobic001G195200 Sobic001G195200 Sobic003G260300--Sobic001G195200 Sobic009G141500 Sobic009G141500 Sobic002G328400--Sobic009G141500 Sobic001G259700 Sobic001G259700 Sobic002G328400--Sobic001G259700 Sobic002G328400--Sobic003G265200 Sobic002G328400--Sobic004G191400 Sobic002G328400--Sobic003G260300 Sobic004G169200 Sobic004G169200 Sobic002G328400--Sobic004G169200 Sobic002G328400--Sobic001G079300 Sobic006G263600 Sobic006G263600 Sobic002G328400--Sobic006G263600 Sobic002G328400--Sobic001G431500 Sobic001G431500--Sobic003G265200 Sobic001G431500--Sobic002G328400 Sobic004G315200 Sobic004G315200 Sobic001G431500--Sobic004G315200 Sobic001G431500--Sobic003G260300 Sobic001G431500--Sobic004G191400 Sobic003G093000 Sobic003G093000 Sobic001G431500--Sobic003G093000 Sobic002G189100 Sobic002G189100 Sobic001G431500--Sobic002G189100 Sobic010G209200 Sobic010G209200 Sobic001G431500--Sobic010G209200 Sobic002G220000 Sobic002G220000 Sobic001G431500--Sobic002G220000 Sobic004G237800 Sobic004G237800 Sobic002G336600--Sobic004G237800 Sobic007G074000 Sobic007G074000 Sobic002G336600--Sobic007G074000 Sobic004G208700 Sobic004G208700 Sobic002G336600--Sobic004G208700 Sobic004G229800 Sobic004G229800 Sobic002G336600--Sobic004G229800 Sobic003G369100 Sobic003G369100 Sobic002G336600--Sobic003G369100 Sobic001G435000 Sobic001G435000 Sobic002G336600--Sobic001G435000 Sobic002G140400 Sobic002G140400 Sobic002G336600--Sobic002G140400 Sobic004G141200 Sobic004G141200 Sobic002G336600--Sobic004G141200 Sobic003G345100 Sobic003G345100 Sobic002G336600--Sobic003G345100 Sobic003G442100 Sobic003G442100 Sobic001G259900--Sobic003G442100 Sobic006G007900 Sobic006G007900 Sobic001G259900--Sobic006G007900 Sobic009G198600 Sobic009G198600 Sobic001G259900--Sobic009G198600 Sobic001G259900--Sobic009G141500 Sobic001G259900--Sobic009G184000 Sobic006G235100 Sobic006G235100 Sobic001G259900--Sobic006G235100 Sobic001G259900--Sobic004G191400 Sobic001G310600 Sobic001G310600 Sobic001G259900--Sobic001G310600 Sobic001G259900--Sobic001G079300 Sobic009G184000--Sobic001G112200 Sobic007G169700 Sobic007G169700 Sobic009G184000--Sobic007G169700 Sobic009G184000--Sobic006G235100 Sobic009G184000--Sobic001G502400 Sobic009G184000--Sobic003G228900 Sobic009G184000--Sobic003G432700 Sobic001G138600 Sobic001G138600 Sobic009G184000--Sobic001G138600 Sobic008G066401 Sobic008G066401 Sobic009G184000--Sobic008G066401 Sobic009G184000--Sobic002G189100 Sobic003G228900--Sobic006G075400 Sobic003G228900--Sobic010G209200 Sobic003G228900--Sobic009G184000 Sobic003G228900--Sobic004G191400 Sobic003G228900--Sobic003G432700 Sobic003G228900--Sobic003G260300 Sobic007G017500 Sobic007G017500 Sobic003G228900--Sobic007G017500 Sobic009G122400 Sobic009G122400 Sobic003G228900--Sobic009G122400 Sobic003G228900--Sobic001G079300 Sobic002G338500 Sobic002G338500 Sobic003G043600--Sobic002G338500 Sobic009G145500 Sobic009G145500 Sobic003G043600--Sobic009G145500 Sobic003G268600 Sobic003G268600 Sobic003G043600--Sobic003G268600 Sobic003G043600--Sobic006G075400 Sobic003G043600--Sobic003G442100 Sobic003G043600--Sobic001G310600 Sobic003G043600--Sobic009G184000 Sobic009G145700 Sobic009G145700 Sobic003G043600--Sobic009G145700 Sobic003G043600--Sobic001G318700
Octagon: transcription factors


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