Gene annotation
Transcriptome id Sobic.001G079300.1
Synonym Sb01g007160
Functional annotation helix-loop-helix DNA-binding domain containing protein, expressed
UniProt C5X030
Pfam PF00010
Panther DB PTHR16223 PTHR16223:SF30
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G14760 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os03g55550.1 : helix-loop-helix DNA-binding domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley HORVU5Hr1G097520.1
Wheat TraesCS5B02G406100 , TraesCS5D02G411600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G191400 - -
2 Sobic.004G191300 - -
3 Sobic.010G209200 WRKY28, expressed -
4 Sobic.003G228900 cytochrome P450 72A1, putative, expressed -
5 Sobic.001G138600 VQ domain containing protein, putative, expressed -
6 Sobic.009G122400 expressed protein -
7 Sobic.003G260300 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
8 Sobic.004G141200 cytochrome P450, putative, expressed K00487: trans-cinnamate 4-monooxygenase
9 Sobic.009G184000 ICE-like protease p20 domain containing protein, putative, expressed -
10 Sobic.001G481100 DUF581 domain containing protein, expressed -
11 Sobic.007G213800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EF hand family protein, putative, expressed -
12 Sobic.007G036900 triacylglycerol lipase like protein, putative, expressed -
13 Sobic.001G310600 expressed protein -
14 Sobic.007G074000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@- -
15 Sobic.001G318700 glutathione S-transferase GSTU6, putative, expressed K00799: GST, glutathione S-transferase
16 Sobic.004G294400 expansin precursor, putative, expressed -
17 Sobic.006G075400 U-box domain-containing protein, putative, expressed -
18 Sobic.005G186100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@patatin, putative, expressed -
19 Sobic.001G256700 cystathionine gamma-synthase, putative, expressed K01739: cystathionine gamma-synthase
20 Sobic.004G169200 U-box domain-containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G079300 Sobic001G079300 Sobic004G191400 Sobic004G191400 Sobic001G079300--Sobic004G191400 Sobic004G191300 Sobic004G191300 Sobic001G079300--Sobic004G191300 Sobic010G209200 Sobic010G209200 Sobic001G079300--Sobic010G209200 Sobic003G228900 Sobic003G228900 Sobic001G079300--Sobic003G228900 Sobic001G138600 Sobic001G138600 Sobic001G079300--Sobic001G138600 Sobic009G122400 Sobic009G122400 Sobic001G079300--Sobic009G122400 Sobic003G260300 Sobic003G260300 Sobic001G079300--Sobic003G260300 Sobic004G141200 Sobic004G141200 Sobic001G079300--Sobic004G141200 Sobic009G184000 Sobic009G184000 Sobic001G079300--Sobic009G184000 Sobic004G191400--Sobic004G191300 Sobic004G191400--Sobic001G079300 Sobic004G191400--Sobic009G122400 Sobic004G191400--Sobic010G209200 Sobic007G122800 Sobic007G122800 Sobic004G191400--Sobic007G122800 Sobic004G191400--Sobic003G228900 Sobic004G308900 Sobic004G308900 Sobic004G191400--Sobic004G308900 Sobic003G428700 Sobic003G428700 Sobic004G191400--Sobic003G428700 Sobic004G294400 Sobic004G294400 Sobic004G191400--Sobic004G294400 Sobic004G191300--Sobic004G191400 Sobic004G191300--Sobic009G122400 Sobic004G191300--Sobic001G079300 Sobic004G191300--Sobic010G209200 Sobic004G191300--Sobic007G122800 Sobic004G191300--Sobic004G294400 Sobic004G191300--Sobic004G308900 Sobic002G358300 Sobic002G358300 Sobic004G191300--Sobic002G358300 Sobic001G195200 Sobic001G195200 Sobic004G191300--Sobic001G195200 Sobic010G209200--Sobic009G122400 Sobic010G209200--Sobic004G191400 Sobic010G209200--Sobic003G428700 Sobic010G209200--Sobic003G228900 Sobic010G209200--Sobic001G079300 Sobic010G209200--Sobic004G191300 Sobic010G209200--Sobic001G138600 Sobic007G213800 Sobic007G213800 Sobic010G209200--Sobic007G213800 Sobic010G209200--Sobic009G184000 Sobic006G075400 Sobic006G075400 Sobic003G228900--Sobic006G075400 Sobic003G228900--Sobic010G209200 Sobic003G228900--Sobic009G184000 Sobic003G228900--Sobic004G191400 Sobic003G432700 Sobic003G432700 Sobic003G228900--Sobic003G432700 Sobic003G228900--Sobic003G260300 Sobic007G017500 Sobic007G017500 Sobic003G228900--Sobic007G017500 Sobic003G228900--Sobic009G122400 Sobic003G228900--Sobic001G079300 Sobic003G382800 Sobic003G382800 Sobic001G138600--Sobic003G382800 Sobic001G112200 Sobic001G112200 Sobic001G138600--Sobic001G112200 Sobic001G138600--Sobic004G141200 Sobic003G369100 Sobic003G369100 Sobic001G138600--Sobic003G369100 Sobic001G138600--Sobic009G184000 Sobic001G138600--Sobic001G079300 Sobic007G074000 Sobic007G074000 Sobic001G138600--Sobic007G074000 Sobic001G459800 Sobic001G459800 Sobic001G138600--Sobic001G459800 Sobic001G391500 Sobic001G391500 Sobic001G138600--Sobic001G391500 Sobic009G122400--Sobic004G191400 Sobic009G122400--Sobic010G209200 Sobic009G122400--Sobic004G191300 Sobic009G122400--Sobic003G428700 Sobic009G122400--Sobic003G228900 Sobic009G122400--Sobic001G079300 Sobic001G330400 Sobic001G330400 Sobic009G122400--Sobic001G330400 Sobic001G256700 Sobic001G256700 Sobic009G122400--Sobic001G256700 Sobic002G388900 Sobic002G388900 Sobic009G122400--Sobic002G388900 Sobic003G260300--Sobic003G228900 Sobic003G260300--Sobic001G079300 Sobic003G260300--Sobic004G191400 Sobic003G260300--Sobic006G075400 Sobic003G260300--Sobic003G432700 Sobic001G502400 Sobic001G502400 Sobic003G260300--Sobic001G502400 Sobic003G260300--Sobic009G184000 Sobic003G260300--Sobic004G191300 Sobic003G260300--Sobic001G195200 Sobic004G141200--Sobic003G369100 Sobic001G108200 Sobic001G108200 Sobic004G141200--Sobic001G108200 Sobic004G141200--Sobic007G074000 Sobic003G393900 Sobic003G393900 Sobic004G141200--Sobic003G393900 Sobic004G141200--Sobic001G459800 Sobic004G304625 Sobic004G304625 Sobic004G141200--Sobic004G304625 Sobic004G141200--Sobic001G138600 Sobic004G141200--Sobic001G391500 Sobic004G100700 Sobic004G100700 Sobic004G141200--Sobic004G100700 Sobic009G184000--Sobic001G112200 Sobic007G169700 Sobic007G169700 Sobic009G184000--Sobic007G169700 Sobic006G235100 Sobic006G235100 Sobic009G184000--Sobic006G235100 Sobic009G184000--Sobic001G502400 Sobic009G184000--Sobic003G228900 Sobic009G184000--Sobic003G432700 Sobic009G184000--Sobic001G138600 Sobic008G066401 Sobic008G066401 Sobic009G184000--Sobic008G066401 Sobic002G189100 Sobic002G189100 Sobic009G184000--Sobic002G189100
Octagon: transcription factors


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