Gene annotation
Transcriptome id Sobic.002G328400.1,Sobic.002G328400.2
Synonym CRK10, Sb02g035500, RLK4
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
TKL_IRAK_DUF26-lc.15 - DUF26 kinases have homology to DUF26 containing loci, expressed
UniProt A0A1B6QER1 , A0A1B6QES6
Pfam PF01657 PF00069
Panther DB PTHR27002 PTHR27002:SF16
NCBI CDD KOG1187; Serine/threonine protein kinase
KEGG Orthology -
Gene Ontology GO:0006468; protein phosphorylation GO:0005524ATP binding GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT4G23310 : cysteine-rich RLK (RECEPTOR-like protein kinase) 23,cysteine-rich RLK (RECEPTOR-like protein kinase) 10
RAP-DB (Rice) LOC_Os07g35370.1 : TKL_IRAK_DUF26-lc.15 - DUF26 kinases have homology to DUF26 containing loci, expressed
MaizeGDB (Corn) Zm00025a014848 , Zm00025a014849 , Zm00025a048294 , Zm00025a048295 , Zm00025a048290 , Zm00025a039905
Brachypodium -
Barley HORVU3Hr1G077170.6 , HORVU3Hr1G077170.5 , HORVU3Hr1G077170.4 , HORVU3Hr1G077170.3 , HORVU3Hr1G077170.2 , HORVU3Hr1G077170.9 , HORVU2Hr1G125250.3 , HORVU2Hr1G125250.2 , HORVU2Hr1G125250.1 , HORVU2Hr1G125250.7 , HORVU2Hr1G125250.6 , HORVU2Hr1G125250.5 , HORVU2Hr1G125250.4 , HORVU2Hr1G125250.9 , HORVU2Hr1G125250.8 , HORVU2Hr1G125250.13 , HORVU2Hr1G125250.12 , HORVU2Hr1G125250.11 , HORVU2Hr1G125250.15 , HORVU2Hr1G125250.14 , HORVU3Hr1G077170.11 , HORVU3Hr1G077170.10 , HORVU2Hr1G125250.10
Wheat TraesCS1B02G454100 , TraesCS2B02G567100 , TraesCS2B02G567100 , TraesCS2B02G567100 , TraesCS2B02G567100 , TraesCS1B02G454600 , TraesCS2A02G536500 , TraesCS2A02G536500 , TraesCS3A02G323500 , TraesCS3A02G323500 , TraesCS3A02G323500 , TraesCS3D02G316900 , TraesCS3B02G352700 , TraesCS3B02G352700 , TraesCS3B02G352700 , TraesCS3D02G317000 , TraesCS2D02G222000 , TraesCS2D02G537900 , TraesCS2D02G537900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G141500 Not investigated(PubMedID : 23766026)@"SERF1(Ortholog in rice:Schmidt et al., 2013)"(PubMedID : 31659925)@ethylene-responsive transcription factor ERF020, putative, expressed -
2 Sobic.001G259700 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
3 Sobic.003G265200 B3 DNA binding domain containing protein, expressed K09287: RAV-like factor
4 Sobic.004G191400 - -
5 Sobic.003G260300 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
6 Sobic.004G169200 U-box domain-containing protein, putative, expressed -
7 Sobic.001G079300 helix-loop-helix DNA-binding domain containing protein, expressed -
8 Sobic.006G263600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.001G431500 gibberellin receptor GID1L2, putative, expressed -
10 Sobic.010G209200 WRKY28, expressed -
11 Sobic.004G191300 - -
12 Sobic.005G186100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@patatin, putative, expressed -
13 Sobic.003G228900 cytochrome P450 72A1, putative, expressed -
14 Sobic.001G138600 VQ domain containing protein, putative, expressed -
15 Sobic.001G259900 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
16 Sobic.001G449700 highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@cytochrome P450, putative, expressed K01723: hydroperoxide dehydratase
17 Sobic.007G122800 expressed protein -
18 Sobic.002G358300 expressed protein -
19 Sobic.001G481100 DUF581 domain containing protein, expressed -
20 Sobic.001G383700 OsCML27 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML


Gene co-expression network
sample Sobic002G328400 Sobic002G328400 Sobic009G141500 Sobic009G141500 Sobic002G328400--Sobic009G141500 Sobic001G259700 Sobic001G259700 Sobic002G328400--Sobic001G259700 Sobic003G265200 Sobic003G265200 Sobic002G328400--Sobic003G265200 Sobic004G191400 Sobic004G191400 Sobic002G328400--Sobic004G191400 Sobic003G260300 Sobic003G260300 Sobic002G328400--Sobic003G260300 Sobic004G169200 Sobic004G169200 Sobic002G328400--Sobic004G169200 Sobic001G079300 Sobic001G079300 Sobic002G328400--Sobic001G079300 Sobic006G263600 Sobic006G263600 Sobic002G328400--Sobic006G263600 Sobic001G431500 Sobic001G431500 Sobic002G328400--Sobic001G431500 Sobic001G259900 Sobic001G259900 Sobic009G141500--Sobic001G259900 Sobic009G141500--Sobic001G259700 Sobic009G141500--Sobic002G328400 Sobic009G141500--Sobic001G079300 Sobic009G141500--Sobic004G191400 Sobic001G138600 Sobic001G138600 Sobic009G141500--Sobic001G138600 Sobic005G186100 Sobic005G186100 Sobic009G141500--Sobic005G186100 Sobic009G141500--Sobic004G169200 Sobic006G007900 Sobic006G007900 Sobic009G141500--Sobic006G007900 Sobic001G259700--Sobic006G263600 Sobic001G259700--Sobic009G141500 Sobic001G259600 Sobic001G259600 Sobic001G259700--Sobic001G259600 Sobic001G259700--Sobic002G328400 Sobic001G259700--Sobic004G169200 Sobic001G259700--Sobic004G191400 Sobic001G449700 Sobic001G449700 Sobic001G259700--Sobic001G449700 Sobic002G405600 Sobic002G405600 Sobic001G259700--Sobic002G405600 Sobic001G259700--Sobic001G079300 Sobic006G157500 Sobic006G157500 Sobic003G265200--Sobic006G157500 Sobic003G265200--Sobic003G260300 Sobic003G265200--Sobic002G328400 Sobic003G265200--Sobic001G431500 Sobic002G336600 Sobic002G336600 Sobic003G265200--Sobic002G336600 Sobic003G265200--Sobic001G259900 Sobic009G184000 Sobic009G184000 Sobic003G265200--Sobic009G184000 Sobic003G228900 Sobic003G228900 Sobic003G265200--Sobic003G228900 Sobic003G043600 Sobic003G043600 Sobic003G265200--Sobic003G043600 Sobic004G191300 Sobic004G191300 Sobic004G191400--Sobic004G191300 Sobic004G191400--Sobic001G079300 Sobic009G122400 Sobic009G122400 Sobic004G191400--Sobic009G122400 Sobic010G209200 Sobic010G209200 Sobic004G191400--Sobic010G209200 Sobic007G122800 Sobic007G122800 Sobic004G191400--Sobic007G122800 Sobic004G191400--Sobic003G228900 Sobic004G308900 Sobic004G308900 Sobic004G191400--Sobic004G308900 Sobic003G428700 Sobic003G428700 Sobic004G191400--Sobic003G428700 Sobic004G294400 Sobic004G294400 Sobic004G191400--Sobic004G294400 Sobic003G260300--Sobic003G228900 Sobic003G260300--Sobic001G079300 Sobic003G260300--Sobic004G191400 Sobic006G075400 Sobic006G075400 Sobic003G260300--Sobic006G075400 Sobic003G432700 Sobic003G432700 Sobic003G260300--Sobic003G432700 Sobic001G502400 Sobic001G502400 Sobic003G260300--Sobic001G502400 Sobic003G260300--Sobic009G184000 Sobic003G260300--Sobic004G191300 Sobic001G195200 Sobic001G195200 Sobic003G260300--Sobic001G195200 Sobic002G395300 Sobic002G395300 Sobic004G169200--Sobic002G395300 Sobic002G358300 Sobic002G358300 Sobic004G169200--Sobic002G358300 Sobic004G169200--Sobic003G428700 Sobic004G169200--Sobic006G263600 Sobic004G169200--Sobic004G191400 Sobic004G169200--Sobic009G122400 Sobic004G169200--Sobic010G209200 Sobic002G220000 Sobic002G220000 Sobic004G169200--Sobic002G220000 Sobic002G339000 Sobic002G339000 Sobic004G169200--Sobic002G339000 Sobic001G079300--Sobic004G191400 Sobic001G079300--Sobic004G191300 Sobic001G079300--Sobic010G209200 Sobic001G079300--Sobic003G228900 Sobic001G079300--Sobic001G138600 Sobic001G079300--Sobic009G122400 Sobic001G079300--Sobic003G260300 Sobic004G141200 Sobic004G141200 Sobic001G079300--Sobic004G141200 Sobic001G079300--Sobic009G184000 Sobic006G263600--Sobic001G259700 Sobic006G263600--Sobic004G169200 Sobic009G247900 Sobic009G247900 Sobic006G263600--Sobic009G247900 Sobic009G036000 Sobic009G036000 Sobic006G263600--Sobic009G036000 Sobic001G383700 Sobic001G383700 Sobic006G263600--Sobic001G383700 Sobic003G324400 Sobic003G324400 Sobic006G263600--Sobic003G324400 Sobic007G213800 Sobic007G213800 Sobic006G263600--Sobic007G213800 Sobic006G263600--Sobic001G079300 Sobic002G282300 Sobic002G282300 Sobic006G263600--Sobic002G282300 Sobic001G431500--Sobic003G265200 Sobic001G431500--Sobic002G328400 Sobic004G315200 Sobic004G315200 Sobic001G431500--Sobic004G315200 Sobic001G431500--Sobic003G260300 Sobic001G431500--Sobic004G191400 Sobic003G093000 Sobic003G093000 Sobic001G431500--Sobic003G093000 Sobic002G189100 Sobic002G189100 Sobic001G431500--Sobic002G189100 Sobic001G431500--Sobic010G209200 Sobic001G431500--Sobic002G220000
Octagon: transcription factors


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