Gene annotation
Transcriptome id Sobic.002G339100.1
Synonym Sb02g036370, 2-Oct, ATOCT2, OCT2
Functional annotation similar to Putative organic cation transporter (PubMedID : 24655390)
similar to Putative organic cation transporter (PubMedID : 24655390)
organic cation transporter-related, putative, expressed
UniProt C5XBK0
Pfam PF00083
Panther DB PTHR24064 PTHR24064:SF172
NCBI CDD KOG0255; Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily)
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT1G79360 : organic cation/carnitine transporter 2
RAP-DB (Rice) LOC_Os07g37510.1 : organic cation transporter-related, putative, expressed
MaizeGDB (Corn) Zm00025a046901 , Zm00025a048386
Brachypodium KQK15764
Barley HORVU2Hr1G040800.4 , HORVU2Hr1G040800.5 , HORVU2Hr1G040800.6 , HORVU2Hr1G040800.1 , HORVU2Hr1G040800.2 , HORVU2Hr1G040800.3 , HORVU2Hr1G040790.1
Wheat -
Populus -


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cDNA sequences
Sobic.002G339100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G260300 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
2 Sobic.006G157500 zinc finger, C3HC4 type domain containing protein, expressed K10666: E3 ubiquitin-protein ligase RNF5
3 Sobic.003G265200 B3 DNA binding domain containing protein, expressed K09287: RAV-like factor
4 Sobic.001G502400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@RING-H2 finger protein ATL3F, putative, expressed -
5 Sobic.009G184000 ICE-like protease p20 domain containing protein, putative, expressed -
6 Sobic.003G432700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@secreted glycoprotein, putative, expressed -
7 Sobic.001G318700 glutathione S-transferase GSTU6, putative, expressed K00799: GST, glutathione S-transferase
8 Sobic.006G075400 U-box domain-containing protein, putative, expressed -
9 Sobic.006G007900 SbOMT3 is involved in the biosynthesis of the allelochemical sorgoleone. Highly expressed in rrot hairs.(PubMedID : 17998204)@"Catalyse the A ringspecific 3,5-bis-O-methylation of resveratrol, yielding pterostilbene, preference for alkylresorcinolic-type substrates"(PubMedID : 21902799)@Produced pinostilbene as the major product besides a very small amount of pterostilbene from resveratrol in E.coli.(PubMedID : 24267561)@"Methylation activity in the A ring hydroxyl group against resveratrol as well as 3,5-dihydroxy-4'-methoxystilbene"(PubMedID : 25033820)@Catalytic activity for transferring one methyl group to the hydroxyl group at the 3- or 5-position in resveratrol in E.coli. Weak activity for methylation of both hydroxyl groups to generate pterostilbene in E.coli.(PubMedID : 25715927)@O-methyltransferase, putative, expressed -
10 Sobic.006G235100 expressed protein -
11 Sobic.005G107900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein O-methyltransferase ZRP4 (Zm)(PubMedID : 27208977)@O-methyltransferase, putative, expressed -
12 Sobic.003G228900 cytochrome P450 72A1, putative, expressed -
13 Sobic.001G079300 helix-loop-helix DNA-binding domain containing protein, expressed -
14 Sobic.007G169700 inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed K01240: uridine nucleosidase
15 Sobic.001G138600 VQ domain containing protein, putative, expressed -
16 Sobic.001G313600 heavy metal-associated domain containing protein, expressed -
17 Sobic.009G168900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed -
18 Sobic.004G191300 - -
19 Sobic.004G191400 - -
20 Sobic.001G310600 expressed protein -


Gene co-expression network
sample Sobic002G339100 Sobic002G339100 Sobic003G260300 Sobic003G260300 Sobic002G339100--Sobic003G260300 Sobic006G157500 Sobic006G157500 Sobic002G339100--Sobic006G157500 Sobic003G265200 Sobic003G265200 Sobic002G339100--Sobic003G265200 Sobic001G502400 Sobic001G502400 Sobic002G339100--Sobic001G502400 Sobic009G184000 Sobic009G184000 Sobic002G339100--Sobic009G184000 Sobic003G432700 Sobic003G432700 Sobic002G339100--Sobic003G432700 Sobic001G318700 Sobic001G318700 Sobic002G339100--Sobic001G318700 Sobic006G075400 Sobic006G075400 Sobic002G339100--Sobic006G075400 Sobic006G007900 Sobic006G007900 Sobic002G339100--Sobic006G007900 Sobic003G228900 Sobic003G228900 Sobic003G260300--Sobic003G228900 Sobic001G079300 Sobic001G079300 Sobic003G260300--Sobic001G079300 Sobic004G191400 Sobic004G191400 Sobic003G260300--Sobic004G191400 Sobic003G260300--Sobic006G075400 Sobic003G260300--Sobic003G432700 Sobic003G260300--Sobic001G502400 Sobic003G260300--Sobic009G184000 Sobic004G191300 Sobic004G191300 Sobic003G260300--Sobic004G191300 Sobic001G195200 Sobic001G195200 Sobic003G260300--Sobic001G195200 Sobic009G168900 Sobic009G168900 Sobic006G157500--Sobic009G168900 Sobic006G157500--Sobic003G265200 Sobic006G157500--Sobic002G339100 Sobic006G157500--Sobic003G260300 Sobic001G477600 Sobic001G477600 Sobic006G157500--Sobic001G477600 Sobic006G157500--Sobic001G318700 Sobic006G157500--Sobic009G184000 Sobic004G109900 Sobic004G109900 Sobic006G157500--Sobic004G109900 Sobic001G112200 Sobic001G112200 Sobic006G157500--Sobic001G112200 Sobic003G265200--Sobic006G157500 Sobic003G265200--Sobic003G260300 Sobic002G328400 Sobic002G328400 Sobic003G265200--Sobic002G328400 Sobic001G431500 Sobic001G431500 Sobic003G265200--Sobic001G431500 Sobic002G336600 Sobic002G336600 Sobic003G265200--Sobic002G336600 Sobic001G259900 Sobic001G259900 Sobic003G265200--Sobic001G259900 Sobic003G265200--Sobic009G184000 Sobic003G265200--Sobic003G228900 Sobic003G043600 Sobic003G043600 Sobic003G265200--Sobic003G043600 Sobic005G107900 Sobic005G107900 Sobic001G502400--Sobic005G107900 Sobic001G313600 Sobic001G313600 Sobic001G502400--Sobic001G313600 Sobic006G235100 Sobic006G235100 Sobic001G502400--Sobic006G235100 Sobic001G502400--Sobic003G432700 Sobic001G502400--Sobic009G184000 Sobic001G502400--Sobic006G075400 Sobic009G188000 Sobic009G188000 Sobic001G502400--Sobic009G188000 Sobic005G011300 Sobic005G011300 Sobic001G502400--Sobic005G011300 Sobic001G502400--Sobic006G007900 Sobic009G184000--Sobic001G112200 Sobic007G169700 Sobic007G169700 Sobic009G184000--Sobic007G169700 Sobic009G184000--Sobic006G235100 Sobic009G184000--Sobic001G502400 Sobic009G184000--Sobic003G228900 Sobic009G184000--Sobic003G432700 Sobic001G138600 Sobic001G138600 Sobic009G184000--Sobic001G138600 Sobic008G066401 Sobic008G066401 Sobic009G184000--Sobic008G066401 Sobic002G189100 Sobic002G189100 Sobic009G184000--Sobic002G189100 Sobic003G432700--Sobic005G107900 Sobic003G432700--Sobic001G502400 Sobic003G432700--Sobic003G228900 Sobic003G432700--Sobic005G011300 Sobic003G432700--Sobic001G313600 Sobic003G432700--Sobic009G184000 Sobic003G432700--Sobic006G075400 Sobic001G169500 Sobic001G169500 Sobic003G432700--Sobic001G169500 Sobic003G432700--Sobic007G169700 Sobic001G318700--Sobic001G112200 Sobic001G018300 Sobic001G018300 Sobic001G318700--Sobic001G018300 Sobic004G243100 Sobic004G243100 Sobic001G318700--Sobic004G243100 Sobic002G192000 Sobic002G192000 Sobic001G318700--Sobic002G192000 Sobic003G303100 Sobic003G303100 Sobic001G318700--Sobic003G303100 Sobic002G251000 Sobic002G251000 Sobic001G318700--Sobic002G251000 Sobic001G140900 Sobic001G140900 Sobic001G318700--Sobic001G140900 Sobic001G318700--Sobic006G075400 Sobic001G481100 Sobic001G481100 Sobic001G318700--Sobic001G481100 Sobic007G017500 Sobic007G017500 Sobic006G075400--Sobic007G017500 Sobic004G294400 Sobic004G294400 Sobic006G075400--Sobic004G294400 Sobic006G075400--Sobic003G228900 Sobic006G075400--Sobic003G043600 Sobic003G268600 Sobic003G268600 Sobic006G075400--Sobic003G268600 Sobic001G330400 Sobic001G330400 Sobic006G075400--Sobic001G330400 Sobic006G075400--Sobic003G432700 Sobic006G075400--Sobic005G107900 Sobic006G075400--Sobic001G502400 Sobic006G007900--Sobic006G235100 Sobic001G259400 Sobic001G259400 Sobic006G007900--Sobic001G259400 Sobic003G442100 Sobic003G442100 Sobic006G007900--Sobic003G442100 Sobic006G007900--Sobic009G184000 Sobic007G122800 Sobic007G122800 Sobic006G007900--Sobic007G122800 Sobic006G007900--Sobic001G259900 Sobic006G007900--Sobic008G066401 Sobic006G007900--Sobic001G502400 Sobic005G086600 Sobic005G086600 Sobic006G007900--Sobic005G086600
Octagon: transcription factors


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