Gene annotation
Transcriptome id Sobic.003G064200.2
Synonym
Functional annotation MYB family transcription factor, putative, expressed
UniProt A0A1W0VVX4
Pfam PF00249
Panther DB PTHR12802 PTHR12802:SF50
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G09600 : Homeodomain-like superfamily protein
RAP-DB (Rice) LOC_Os01g06320.1 : MYB family transcription factor, putative, expressed
MaizeGDB (Corn) Zm00025a023369 , Zm00025a014118
Brachypodium -
Barley HORVU3Hr1G025030.9 , HORVU3Hr1G025030.8 , HORVU3Hr1G025030.5 , HORVU3Hr1G025030.4 , HORVU3Hr1G025030.7 , HORVU3Hr1G025030.6 , HORVU3Hr1G025030.1 , HORVU3Hr1G025030.3 , HORVU3Hr1G025030.2
Wheat TraesCS3A02G308500 , TraesCS3B02G151500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G268600 - -
2 Sobic.003G442100 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@dehydration-responsive element-binding protein, putative, expressed -
3 Sobic.009G184100 - -
4 Sobic.009G184000 ICE-like protease p20 domain containing protein, putative, expressed -
5 Sobic.004G191400 - -
6 Sobic.009G122400 expressed protein -
7 Sobic.008G066401 - -
8 Sobic.010G209200 WRKY28, expressed -
9 Sobic.001G318700 glutathione S-transferase GSTU6, putative, expressed K00799: GST, glutathione S-transferase
10 Sobic.001G267600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@thaumatin, putative, expressed -
11 Sobic.003G043600 BAHD acyl transferase(PubMedID : 28944535)@transferase family protein, putative, expressed -
12 Sobic.001G079300 helix-loop-helix DNA-binding domain containing protein, expressed -
13 Sobic.005G086600 O-methyltransferase, putative, expressed -
14 Sobic.004G041900 apoptosis-inducing factor 2, putative, expressed -
15 Sobic.001G310600 expressed protein -
16 Sobic.009G145700 peroxidase precursor, putative, expressed K00430: peroxidase
17 Sobic.006G007900 SbOMT3 is involved in the biosynthesis of the allelochemical sorgoleone. Highly expressed in rrot hairs.(PubMedID : 17998204)@"Catalyse the A ringspecific 3,5-bis-O-methylation of resveratrol, yielding pterostilbene, preference for alkylresorcinolic-type substrates"(PubMedID : 21902799)@Produced pinostilbene as the major product besides a very small amount of pterostilbene from resveratrol in E.coli.(PubMedID : 24267561)@"Methylation activity in the A ring hydroxyl group against resveratrol as well as 3,5-dihydroxy-4'-methoxystilbene"(PubMedID : 25033820)@Catalytic activity for transferring one methyl group to the hydroxyl group at the 3- or 5-position in resveratrol in E.coli. Weak activity for methylation of both hydroxyl groups to generate pterostilbene in E.coli.(PubMedID : 25715927)@O-methyltransferase, putative, expressed -
18 Sobic.006G235100 expressed protein -
19 Sobic.004G191300 - -
20 Sobic.003G228900 cytochrome P450 72A1, putative, expressed -


Gene co-expression network
sample Sobic003G064200 Sobic003G064200 Sobic003G268600 Sobic003G268600 Sobic003G064200--Sobic003G268600 Sobic003G442100 Sobic003G442100 Sobic003G064200--Sobic003G442100 Sobic009G184100 Sobic009G184100 Sobic003G064200--Sobic009G184100 Sobic009G184000 Sobic009G184000 Sobic003G064200--Sobic009G184000 Sobic004G191400 Sobic004G191400 Sobic003G064200--Sobic004G191400 Sobic009G122400 Sobic009G122400 Sobic003G064200--Sobic009G122400 Sobic008G066401 Sobic008G066401 Sobic003G064200--Sobic008G066401 Sobic010G209200 Sobic010G209200 Sobic003G064200--Sobic010G209200 Sobic001G318700 Sobic001G318700 Sobic003G064200--Sobic001G318700 Sobic003G268600--Sobic003G442100 Sobic001G330400 Sobic001G330400 Sobic003G268600--Sobic001G330400 Sobic003G043600 Sobic003G043600 Sobic003G268600--Sobic003G043600 Sobic006G075400 Sobic006G075400 Sobic003G268600--Sobic006G075400 Sobic005G086600 Sobic005G086600 Sobic003G268600--Sobic005G086600 Sobic007G017500 Sobic007G017500 Sobic003G268600--Sobic007G017500 Sobic003G268600--Sobic008G066401 Sobic003G268600--Sobic003G064200 Sobic009G145500 Sobic009G145500 Sobic003G268600--Sobic009G145500 Sobic003G442100--Sobic003G268600 Sobic001G310600 Sobic001G310600 Sobic003G442100--Sobic001G310600 Sobic003G442100--Sobic003G043600 Sobic006G235100 Sobic006G235100 Sobic003G442100--Sobic006G235100 Sobic001G259900 Sobic001G259900 Sobic003G442100--Sobic001G259900 Sobic006G007900 Sobic006G007900 Sobic003G442100--Sobic006G007900 Sobic003G442100--Sobic004G191400 Sobic003G442100--Sobic006G075400 Sobic003G442100--Sobic005G086600 Sobic009G145700 Sobic009G145700 Sobic009G184100--Sobic009G145700 Sobic009G184100--Sobic008G066401 Sobic009G184100--Sobic001G318700 Sobic001G112200 Sobic001G112200 Sobic009G184100--Sobic001G112200 Sobic009G184100--Sobic003G064200 Sobic006G235000 Sobic006G235000 Sobic009G184100--Sobic006G235000 Sobic009G145600 Sobic009G145600 Sobic009G184100--Sobic009G145600 Sobic009G184100--Sobic009G184000 Sobic009G184100--Sobic003G268600 Sobic009G184000--Sobic001G112200 Sobic007G169700 Sobic007G169700 Sobic009G184000--Sobic007G169700 Sobic009G184000--Sobic006G235100 Sobic001G502400 Sobic001G502400 Sobic009G184000--Sobic001G502400 Sobic003G228900 Sobic003G228900 Sobic009G184000--Sobic003G228900 Sobic003G432700 Sobic003G432700 Sobic009G184000--Sobic003G432700 Sobic001G138600 Sobic001G138600 Sobic009G184000--Sobic001G138600 Sobic009G184000--Sobic008G066401 Sobic002G189100 Sobic002G189100 Sobic009G184000--Sobic002G189100 Sobic004G191300 Sobic004G191300 Sobic004G191400--Sobic004G191300 Sobic001G079300 Sobic001G079300 Sobic004G191400--Sobic001G079300 Sobic004G191400--Sobic009G122400 Sobic004G191400--Sobic010G209200 Sobic007G122800 Sobic007G122800 Sobic004G191400--Sobic007G122800 Sobic004G191400--Sobic003G228900 Sobic004G308900 Sobic004G308900 Sobic004G191400--Sobic004G308900 Sobic003G428700 Sobic003G428700 Sobic004G191400--Sobic003G428700 Sobic004G294400 Sobic004G294400 Sobic004G191400--Sobic004G294400 Sobic009G122400--Sobic004G191400 Sobic009G122400--Sobic010G209200 Sobic009G122400--Sobic004G191300 Sobic009G122400--Sobic003G428700 Sobic009G122400--Sobic003G228900 Sobic009G122400--Sobic001G079300 Sobic009G122400--Sobic001G330400 Sobic001G256700 Sobic001G256700 Sobic009G122400--Sobic001G256700 Sobic002G388900 Sobic002G388900 Sobic009G122400--Sobic002G388900 Sobic008G066401--Sobic009G145700 Sobic008G066401--Sobic009G145600 Sobic008G066200 Sobic008G066200 Sobic008G066401--Sobic008G066200 Sobic002G012500 Sobic002G012500 Sobic008G066401--Sobic002G012500 Sobic008G066401--Sobic007G169700 Sobic008G066401--Sobic009G184000 Sobic006G008000 Sobic006G008000 Sobic008G066401--Sobic006G008000 Sobic003G043500 Sobic003G043500 Sobic008G066401--Sobic003G043500 Sobic003G362700 Sobic003G362700 Sobic008G066401--Sobic003G362700 Sobic010G209200--Sobic009G122400 Sobic010G209200--Sobic004G191400 Sobic010G209200--Sobic003G428700 Sobic010G209200--Sobic003G228900 Sobic010G209200--Sobic001G079300 Sobic010G209200--Sobic004G191300 Sobic010G209200--Sobic001G138600 Sobic007G213800 Sobic007G213800 Sobic010G209200--Sobic007G213800 Sobic010G209200--Sobic009G184000 Sobic001G318700--Sobic001G112200 Sobic001G018300 Sobic001G018300 Sobic001G318700--Sobic001G018300 Sobic004G243100 Sobic004G243100 Sobic001G318700--Sobic004G243100 Sobic002G192000 Sobic002G192000 Sobic001G318700--Sobic002G192000 Sobic003G303100 Sobic003G303100 Sobic001G318700--Sobic003G303100 Sobic002G251000 Sobic002G251000 Sobic001G318700--Sobic002G251000 Sobic001G140900 Sobic001G140900 Sobic001G318700--Sobic001G140900 Sobic001G318700--Sobic006G075400 Sobic001G481100 Sobic001G481100 Sobic001G318700--Sobic001G481100
Octagon: transcription factors


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