Gene annotation
Transcriptome id Sobic.001G267600.2
Synonym Sb01g026270
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
thaumatin, putative, expressed
UniProt A0A1Z5S810
Pfam PF00314
Panther DB PTHR31048 PTHR31048:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G36010 : Pathogenesis-related thaumatin superfamily protein
RAP-DB (Rice) LOC_Os10g05660.1 : thaumatin, putative, expressed
MaizeGDB (Corn) Zm00025a045375 , Zm00025a051051 , Zm00025a005688 , Zm00025a043524 , Zm00025a012308 , Zm00025a052900 , Zm00025a049345 , Zm00025a018494 , Zm00025a034213 , Zm00025a003787 , Zm00025a001541
Brachypodium PNT77749 , KQJ96120 , KQJ96119 , PNT64873 , KQK22606 , KQJ81409 , KQJ91229
Barley HORVU7Hr1G057350.4 , HORVU7Hr1G057350.1 , HORVU7Hr1G057350.3 , HORVU7Hr1G057350.2 , HORVU5Hr1G112160.8 , HORVU5Hr1G074940.3 , HORVU5Hr1G074940.2 , HORVU5Hr1G112160.4 , HORVU5Hr1G112160.6 , HORVU5Hr1G112160.7 , HORVU5Hr1G112160.1 , HORVU5Hr1G112160.2 , HORVU5Hr1G112160.3 , HORVU5Hr1G084650.2 , HORVU5Hr1G084650.1 , HORVU5Hr1G083260.2 , HORVU5Hr1G083260.3 , HORVU5Hr1G083260.1 , HORVU5Hr1G083240.4 , HORVU5Hr1G083240.1 , HORVU5Hr1G083240.2 , HORVU5Hr1G083240.3 , HORVU5Hr1G112160.5 , HORVU1Hr1G005760.1
Wheat TraesCS5B02G328400 , TraesCS7D02G517200 , TraesCS7D02G272100 , TraesCS5D02G334300 , TraesCS7A02G529500 , TraesCS7B02G170200 , TraesCS5D02G283400 , TraesCS5D02G485500 , TraesCS7A02G271800 , TraesCS5A02G472800 , TraesCS5B02G328500 , TraesCS7B02G446200 , TraesCS7B02G446200 , TraesCS5B02G485700 , TraesCS5A02G328500 , TraesCS5D02G283400 , TraesCS5D02G334400 , TraesCS7D02G517300 , TraesCS5B02G275400
Populus -


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cDNA sequences
Sobic.001G267600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G093000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
2 Sobic.002G189100 beta-glucan-binding protein 4, putative, expressed K01180: endo-1,3(4)-beta-glucanase
3 Sobic.003G064200 MYB family transcription factor, putative, expressed -
4 Sobic.003G268600 - -
5 Sobic.001G247300 "Ca ATPase, IIB type"(PubMedID : 22196357)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@calcium-transporting ATPase, plasma membrane-type, putative, expressed K01537: P-type Ca2+ transporter type 2C
6 Sobic.009G192600 Protein tyrosine/DOPA decarboxylase 1 (Os)(PubMedID : 27208977)@decarboxylase, putative, expressed K01592: tyrosine decarboxylase
7 Sobic.003G092900 expressed protein -
8 Sobic.003G050300 peroxidases (PubMedID : 28944535)@peroxidase precursor, putative, expressed K00430: peroxidase
9 Sobic.010G259300 transferase family protein, putative, expressed -
10 Sobic.004G064500 class I glutamine amidotransferase, putative, expressed -
11 Sobic.004G041900 apoptosis-inducing factor 2, putative, expressed -
12 Sobic.002G220000 expressed protein -
13 Sobic.003G043600 BAHD acyl transferase(PubMedID : 28944535)@transferase family protein, putative, expressed -
14 Sobic.009G248500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@C4-dicarboxylate transporter/malic acid transport protein, expressed -
15 Sobic.009G184000 ICE-like protease p20 domain containing protein, putative, expressed -
16 Sobic.005G086600 O-methyltransferase, putative, expressed -
17 Sobic.004G222500 gibberellin 2-beta-dioxygenase 7, putative, expressed K04125: gibberellin 2beta-dioxygenase
18 Sobic.004G341800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@thioredoxin family protein, putative, expressed -
19 Sobic.010G082600 EF hand family protein, putative, expressed -
20 Sobic.003G442100 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@dehydration-responsive element-binding protein, putative, expressed -


Gene co-expression network
sample Sobic001G267600 Sobic001G267600 Sobic003G093000 Sobic003G093000 Sobic001G267600--Sobic003G093000 Sobic002G189100 Sobic002G189100 Sobic001G267600--Sobic002G189100 Sobic003G064200 Sobic003G064200 Sobic001G267600--Sobic003G064200 Sobic003G268600 Sobic003G268600 Sobic001G267600--Sobic003G268600 Sobic001G247300 Sobic001G247300 Sobic001G267600--Sobic001G247300 Sobic009G192600 Sobic009G192600 Sobic001G267600--Sobic009G192600 Sobic003G092900 Sobic003G092900 Sobic001G267600--Sobic003G092900 Sobic003G050300 Sobic003G050300 Sobic001G267600--Sobic003G050300 Sobic010G259300 Sobic010G259300 Sobic001G267600--Sobic010G259300 Sobic002G220000 Sobic002G220000 Sobic003G093000--Sobic002G220000 Sobic003G093000--Sobic003G092900 Sobic003G093000--Sobic002G189100 Sobic004G222500 Sobic004G222500 Sobic003G093000--Sobic004G222500 Sobic003G428700 Sobic003G428700 Sobic003G093000--Sobic003G428700 Sobic004G191400 Sobic004G191400 Sobic003G093000--Sobic004G191400 Sobic003G228900 Sobic003G228900 Sobic003G093000--Sobic003G228900 Sobic009G122400 Sobic009G122400 Sobic003G093000--Sobic009G122400 Sobic003G093000--Sobic010G259300 Sobic002G189100--Sobic003G228900 Sobic002G189100--Sobic003G093000 Sobic002G189100--Sobic009G192600 Sobic009G184000 Sobic009G184000 Sobic002G189100--Sobic009G184000 Sobic003G142300 Sobic003G142300 Sobic002G189100--Sobic003G142300 Sobic010G209200 Sobic010G209200 Sobic002G189100--Sobic010G209200 Sobic002G189100--Sobic002G220000 Sobic002G189100--Sobic004G191400 Sobic002G189100--Sobic001G267600 Sobic003G064200--Sobic003G268600 Sobic003G442100 Sobic003G442100 Sobic003G064200--Sobic003G442100 Sobic009G184100 Sobic009G184100 Sobic003G064200--Sobic009G184100 Sobic003G064200--Sobic009G184000 Sobic003G064200--Sobic004G191400 Sobic003G064200--Sobic009G122400 Sobic008G066401 Sobic008G066401 Sobic003G064200--Sobic008G066401 Sobic003G064200--Sobic010G209200 Sobic001G318700 Sobic001G318700 Sobic003G064200--Sobic001G318700 Sobic003G268600--Sobic003G442100 Sobic001G330400 Sobic001G330400 Sobic003G268600--Sobic001G330400 Sobic003G043600 Sobic003G043600 Sobic003G268600--Sobic003G043600 Sobic006G075400 Sobic006G075400 Sobic003G268600--Sobic006G075400 Sobic005G086600 Sobic005G086600 Sobic003G268600--Sobic005G086600 Sobic007G017500 Sobic007G017500 Sobic003G268600--Sobic007G017500 Sobic003G268600--Sobic008G066401 Sobic003G268600--Sobic003G064200 Sobic009G145500 Sobic009G145500 Sobic003G268600--Sobic009G145500 Sobic005G196800 Sobic005G196800 Sobic001G247300--Sobic005G196800 Sobic001G247300--Sobic003G043600 Sobic001G247300--Sobic003G092900 Sobic004G237800 Sobic004G237800 Sobic001G247300--Sobic004G237800 Sobic001G247300--Sobic009G184000 Sobic006G183400 Sobic006G183400 Sobic001G247300--Sobic006G183400 Sobic002G338500 Sobic002G338500 Sobic001G247300--Sobic002G338500 Sobic007G074000 Sobic007G074000 Sobic001G247300--Sobic007G074000 Sobic003G382600 Sobic003G382600 Sobic001G247300--Sobic003G382600 Sobic009G192600--Sobic002G189100 Sobic004G064500 Sobic004G064500 Sobic009G192600--Sobic004G064500 Sobic009G192600--Sobic003G142300 Sobic006G101100 Sobic006G101100 Sobic009G192600--Sobic006G101100 Sobic009G192600--Sobic004G191400 Sobic009G192600--Sobic003G428700 Sobic001G259900 Sobic001G259900 Sobic009G192600--Sobic001G259900 Sobic009G192600--Sobic001G267600 Sobic009G192600--Sobic003G093000 Sobic003G092900--Sobic003G093000 Sobic003G092900--Sobic004G222500 Sobic003G092900--Sobic002G220000 Sobic003G092900--Sobic001G247300 Sobic002G140300 Sobic002G140300 Sobic003G092900--Sobic002G140300 Sobic003G430400 Sobic003G430400 Sobic003G092900--Sobic003G430400 Sobic009G247900 Sobic009G247900 Sobic003G092900--Sobic009G247900 Sobic003G092900--Sobic001G267600 Sobic003G092900--Sobic002G189100 Sobic003G073380 Sobic003G073380 Sobic003G050300--Sobic003G073380 Sobic003G050300--Sobic001G247300 Sobic003G050300--Sobic003G268600 Sobic003G050300--Sobic003G043600 Sobic003G050300--Sobic001G267600 Sobic003G050300--Sobic003G093000 Sobic003G050300--Sobic009G145500 Sobic003G050300--Sobic006G183400 Sobic003G050300--Sobic003G442100 Sobic010G259300--Sobic003G093000 Sobic010G259300--Sobic002G189100 Sobic001G407800 Sobic001G407800 Sobic010G259300--Sobic001G407800 Sobic006G054800 Sobic006G054800 Sobic010G259300--Sobic006G054800 Sobic008G139600 Sobic008G139600 Sobic010G259300--Sobic008G139600 Sobic010G259300--Sobic002G220000 Sobic010G259300--Sobic004G237800 Sobic010G259300--Sobic001G247300 Sobic003G043500 Sobic003G043500 Sobic010G259300--Sobic003G043500
Octagon: transcription factors


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