Gene annotation
Transcriptome id Sobic.004G064500.1
Synonym Sb04g005360
Functional annotation class I glutamine amidotransferase, putative, expressed
UniProt C5XWB2
Pfam PF00117
Panther DB PTHR11922 PTHR11922:SF41
NCBI CDD KOG3179; Predicted glutamine synthetase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G30550 : Class I glutamine amidotransferase-like superfamily protein
RAP-DB (Rice) LOC_Os02g08270.1 : class I glutamine amidotransferase, putative, expressed
MaizeGDB (Corn) Zm00025a034733
Brachypodium KQJ90294 , PNT66021
Barley HORVU4Hr1G004260.6 , HORVU4Hr1G004260.7 , HORVU4Hr1G004260.2 , HORVU4Hr1G004260.3 , HORVU4Hr1G004260.1 , HORVU6Hr1G029750.1 , HORVU6Hr1G029750.2
Wheat TraesCS6A02G149700 , TraesCS6B02G177600 , TraesCS6D02G139000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G192600 Protein tyrosine/DOPA decarboxylase 1 (Os)(PubMedID : 27208977)@decarboxylase, putative, expressed K01592: tyrosine decarboxylase
2 Sobic.001G259400 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
3 Sobic.007G122800 expressed protein -
4 Sobic.005G086600 O-methyltransferase, putative, expressed -
5 Sobic.003G268600 - -
6 Sobic.002G189100 beta-glucan-binding protein 4, putative, expressed K01180: endo-1,3(4)-beta-glucanase
7 Sobic.003G269000 STE_MEKK_ste11_MAP3K.7 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
8 Sobic.001G267600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@thaumatin, putative, expressed -
9 Sobic.006G007900 SbOMT3 is involved in the biosynthesis of the allelochemical sorgoleone. Highly expressed in rrot hairs.(PubMedID : 17998204)@"Catalyse the A ringspecific 3,5-bis-O-methylation of resveratrol, yielding pterostilbene, preference for alkylresorcinolic-type substrates"(PubMedID : 21902799)@Produced pinostilbene as the major product besides a very small amount of pterostilbene from resveratrol in E.coli.(PubMedID : 24267561)@"Methylation activity in the A ring hydroxyl group against resveratrol as well as 3,5-dihydroxy-4'-methoxystilbene"(PubMedID : 25033820)@Catalytic activity for transferring one methyl group to the hydroxyl group at the 3- or 5-position in resveratrol in E.coli. Weak activity for methylation of both hydroxyl groups to generate pterostilbene in E.coli.(PubMedID : 25715927)@O-methyltransferase, putative, expressed -
10 Sobic.003G093000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
11 Sobic.002G358300 expressed protein -
12 Sobic.004G191400 - -
13 Sobic.004G315200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
14 Sobic.003G049700 glyoxalase family protein, putative, expressed -
15 Sobic.003G073380 - -
16 Sobic.003G142300 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
17 Sobic.003G442100 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@dehydration-responsive element-binding protein, putative, expressed -
18 Sobic.003G415000 DUF567 domain containing protein, putative, expressed -
19 Sobic.001G330400 ZOS3-11 - C2H2 zinc finger protein, expressed -
20 Sobic.003G079200 - -


Gene co-expression network
sample Sobic004G064500 Sobic004G064500 Sobic009G192600 Sobic009G192600 Sobic004G064500--Sobic009G192600 Sobic001G259400 Sobic001G259400 Sobic004G064500--Sobic001G259400 Sobic007G122800 Sobic007G122800 Sobic004G064500--Sobic007G122800 Sobic005G086600 Sobic005G086600 Sobic004G064500--Sobic005G086600 Sobic003G268600 Sobic003G268600 Sobic004G064500--Sobic003G268600 Sobic002G189100 Sobic002G189100 Sobic004G064500--Sobic002G189100 Sobic003G269000 Sobic003G269000 Sobic004G064500--Sobic003G269000 Sobic001G267600 Sobic001G267600 Sobic004G064500--Sobic001G267600 Sobic006G007900 Sobic006G007900 Sobic004G064500--Sobic006G007900 Sobic009G192600--Sobic002G189100 Sobic009G192600--Sobic004G064500 Sobic003G142300 Sobic003G142300 Sobic009G192600--Sobic003G142300 Sobic006G101100 Sobic006G101100 Sobic009G192600--Sobic006G101100 Sobic004G191400 Sobic004G191400 Sobic009G192600--Sobic004G191400 Sobic003G428700 Sobic003G428700 Sobic009G192600--Sobic003G428700 Sobic001G259900 Sobic001G259900 Sobic009G192600--Sobic001G259900 Sobic009G192600--Sobic001G267600 Sobic003G093000 Sobic003G093000 Sobic009G192600--Sobic003G093000 Sobic002G012500 Sobic002G012500 Sobic001G259400--Sobic002G012500 Sobic001G259400--Sobic006G007900 Sobic008G066401 Sobic008G066401 Sobic001G259400--Sobic008G066401 Sobic001G259400--Sobic005G086600 Sobic001G259400--Sobic004G064500 Sobic003G079200 Sobic003G079200 Sobic001G259400--Sobic003G079200 Sobic008G066200 Sobic008G066200 Sobic001G259400--Sobic008G066200 Sobic006G008000 Sobic006G008000 Sobic001G259400--Sobic006G008000 Sobic008G158600 Sobic008G158600 Sobic001G259400--Sobic008G158600 Sobic002G358300 Sobic002G358300 Sobic007G122800--Sobic002G358300 Sobic004G308900 Sobic004G308900 Sobic007G122800--Sobic004G308900 Sobic007G122800--Sobic004G191400 Sobic004G294400 Sobic004G294400 Sobic007G122800--Sobic004G294400 Sobic004G191300 Sobic004G191300 Sobic007G122800--Sobic004G191300 Sobic001G195200 Sobic001G195200 Sobic007G122800--Sobic001G195200 Sobic007G122800--Sobic006G007900 Sobic009G122400 Sobic009G122400 Sobic007G122800--Sobic009G122400 Sobic007G122800--Sobic003G268600 Sobic005G086600--Sobic006G008000 Sobic005G086600--Sobic003G268600 Sobic003G073380 Sobic003G073380 Sobic005G086600--Sobic003G073380 Sobic005G086600--Sobic003G079200 Sobic006G235100 Sobic006G235100 Sobic005G086600--Sobic006G235100 Sobic005G086600--Sobic006G007900 Sobic003G442100 Sobic003G442100 Sobic005G086600--Sobic003G442100 Sobic004G161751 Sobic004G161751 Sobic005G086600--Sobic004G161751 Sobic005G086600--Sobic001G259400 Sobic003G268600--Sobic003G442100 Sobic001G330400 Sobic001G330400 Sobic003G268600--Sobic001G330400 Sobic003G043600 Sobic003G043600 Sobic003G268600--Sobic003G043600 Sobic006G075400 Sobic006G075400 Sobic003G268600--Sobic006G075400 Sobic003G268600--Sobic005G086600 Sobic007G017500 Sobic007G017500 Sobic003G268600--Sobic007G017500 Sobic003G268600--Sobic008G066401 Sobic003G064200 Sobic003G064200 Sobic003G268600--Sobic003G064200 Sobic009G145500 Sobic009G145500 Sobic003G268600--Sobic009G145500 Sobic003G228900 Sobic003G228900 Sobic002G189100--Sobic003G228900 Sobic002G189100--Sobic003G093000 Sobic002G189100--Sobic009G192600 Sobic009G184000 Sobic009G184000 Sobic002G189100--Sobic009G184000 Sobic002G189100--Sobic003G142300 Sobic010G209200 Sobic010G209200 Sobic002G189100--Sobic010G209200 Sobic002G220000 Sobic002G220000 Sobic002G189100--Sobic002G220000 Sobic002G189100--Sobic004G191400 Sobic002G189100--Sobic001G267600 Sobic003G269000--Sobic003G073380 Sobic003G269000--Sobic005G086600 Sobic003G269000--Sobic003G268600 Sobic009G186800 Sobic009G186800 Sobic003G269000--Sobic009G186800 Sobic006G235000 Sobic006G235000 Sobic003G269000--Sobic006G235000 Sobic003G269000--Sobic001G330400 Sobic003G269000--Sobic004G064500 Sobic004G315200 Sobic004G315200 Sobic003G269000--Sobic004G315200 Sobic002G063800 Sobic002G063800 Sobic003G269000--Sobic002G063800 Sobic001G267600--Sobic003G093000 Sobic001G267600--Sobic002G189100 Sobic001G267600--Sobic003G064200 Sobic001G267600--Sobic003G268600 Sobic001G247300 Sobic001G247300 Sobic001G267600--Sobic001G247300 Sobic001G267600--Sobic009G192600 Sobic003G092900 Sobic003G092900 Sobic001G267600--Sobic003G092900 Sobic003G050300 Sobic003G050300 Sobic001G267600--Sobic003G050300 Sobic010G259300 Sobic010G259300 Sobic001G267600--Sobic010G259300 Sobic006G007900--Sobic006G235100 Sobic006G007900--Sobic001G259400 Sobic006G007900--Sobic003G442100 Sobic006G007900--Sobic009G184000 Sobic006G007900--Sobic007G122800 Sobic006G007900--Sobic001G259900 Sobic006G007900--Sobic008G066401 Sobic001G502400 Sobic001G502400 Sobic006G007900--Sobic001G502400 Sobic006G007900--Sobic005G086600
Octagon: transcription factors


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