Gene annotation
Transcriptome id Sobic.008G066401.1
Synonym -
Functional annotation -
UniProt A0A1Z5R576
Pfam PF00266
Panther DB PTHR11601 PTHR11601:SF46
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G08490 : chloroplastic NIFS-like cysteine desulfurase
RAP-DB (Rice) LOC_Os12g08850.1 : expressed protein
MaizeGDB (Corn) Zm00025a029625
Brachypodium KQJ89002 , PNT65335
Barley HORVU4Hr1G016990.3 , HORVU4Hr1G016990.2 , HORVU4Hr1G016990.6 , HORVU4Hr1G016990.5 , HORVU4Hr1G016990.4 , HORVU2Hr1G086050.8 , HORVU2Hr1G086050.5 , HORVU2Hr1G086050.4 , HORVU2Hr1G086050.1 , HORVU2Hr1G086050.3 , HORVU2Hr1G086050.2 , HORVU3Hr1G069210.1
Wheat TraesCS2B02G404800 , TraesCS4D02G102400 , TraesCS2A02G355700 , TraesCS4B02G105600 , TraesCS2D02G352600 , TraesCS3B02G316300 , TraesCS2B02G372600 , TraesCS2D02G384200 , TraesCS2D02G384000 , TraesCS3D02G282600 , TraesCS4A02G201400 , TraesCS2D02G384500 , TraesCS2D02G139200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G145700 peroxidase precursor, putative, expressed K00430: peroxidase
2 Sobic.009G145600 peroxidase precursor, putative, expressed K00430: peroxidase
3 Sobic.008G066200 expressed protein -
4 Sobic.002G012500 DUF538 domain containing protein, putative, expressed -
5 Sobic.007G169700 inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed K01240: uridine nucleosidase
6 Sobic.009G184000 ICE-like protease p20 domain containing protein, putative, expressed -
7 Sobic.006G008000 O-methyltransferase, putative, expressed -
8 Sobic.003G043500 - -
9 Sobic.003G362700 cytochrome P450, putative, expressed -
10 Sobic.003G079200 - -
11 Sobic.001G259400 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
12 Sobic.003G268600 - -
13 Sobic.006G007900 SbOMT3 is involved in the biosynthesis of the allelochemical sorgoleone. Highly expressed in rrot hairs.(PubMedID : 17998204)@"Catalyse the A ringspecific 3,5-bis-O-methylation of resveratrol, yielding pterostilbene, preference for alkylresorcinolic-type substrates"(PubMedID : 21902799)@Produced pinostilbene as the major product besides a very small amount of pterostilbene from resveratrol in E.coli.(PubMedID : 24267561)@"Methylation activity in the A ring hydroxyl group against resveratrol as well as 3,5-dihydroxy-4'-methoxystilbene"(PubMedID : 25033820)@Catalytic activity for transferring one methyl group to the hydroxyl group at the 3- or 5-position in resveratrol in E.coli. Weak activity for methylation of both hydroxyl groups to generate pterostilbene in E.coli.(PubMedID : 25715927)@O-methyltransferase, putative, expressed -
14 Sobic.009G184100 - -
15 Sobic.001G112200 LTPL118 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
16 Sobic.004G245700 expressed protein -
17 Sobic.006G235100 expressed protein -
18 Sobic.004G141100 Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed K00913: inositol-1,3,4-trisphosphate 5/6-kinase / inositol-tetrakisphosphate 1-kinase
19 Sobic.001G318700 glutathione S-transferase GSTU6, putative, expressed K00799: GST, glutathione S-transferase
20 Sobic.006G054800 "glycerophosphodiester phosphodiesterase, up-regulated under drought stress, involved in the final step of the choline biosynthesis pathway, mapped into a QTL involved in stay green (QSTG1_6) "(PubMedID : 24655390)@Glycerophosphodiester phosphodiesterase ( At)(PubMedID : 27208977)@glycerophosphoryl diester phosphodiesterase family protein, putative, expressed -


Gene co-expression network
sample Sobic008G066401 Sobic008G066401 Sobic009G145700 Sobic009G145700 Sobic008G066401--Sobic009G145700 Sobic009G145600 Sobic009G145600 Sobic008G066401--Sobic009G145600 Sobic008G066200 Sobic008G066200 Sobic008G066401--Sobic008G066200 Sobic002G012500 Sobic002G012500 Sobic008G066401--Sobic002G012500 Sobic007G169700 Sobic007G169700 Sobic008G066401--Sobic007G169700 Sobic009G184000 Sobic009G184000 Sobic008G066401--Sobic009G184000 Sobic006G008000 Sobic006G008000 Sobic008G066401--Sobic006G008000 Sobic003G043500 Sobic003G043500 Sobic008G066401--Sobic003G043500 Sobic003G362700 Sobic003G362700 Sobic008G066401--Sobic003G362700 Sobic009G145700--Sobic009G145600 Sobic009G145700--Sobic008G066401 Sobic009G145700--Sobic008G066200 Sobic009G145700--Sobic006G008000 Sobic001G112200 Sobic001G112200 Sobic009G145700--Sobic001G112200 Sobic003G043600 Sobic003G043600 Sobic009G145700--Sobic003G043600 Sobic009G145700--Sobic003G043500 Sobic009G145700--Sobic009G184000 Sobic003G079200 Sobic003G079200 Sobic009G145700--Sobic003G079200 Sobic009G145600--Sobic009G145700 Sobic009G145600--Sobic008G066401 Sobic009G145600--Sobic008G066200 Sobic009G145600--Sobic003G079200 Sobic009G145600--Sobic006G008000 Sobic009G145600--Sobic003G043500 Sobic004G245700 Sobic004G245700 Sobic009G145600--Sobic004G245700 Sobic009G145600--Sobic002G012500 Sobic009G200566 Sobic009G200566 Sobic009G145600--Sobic009G200566 Sobic008G066200--Sobic006G008000 Sobic008G066200--Sobic002G012500 Sobic008G066200--Sobic009G145700 Sobic008G066200--Sobic003G079200 Sobic008G066200--Sobic009G145600 Sobic008G066200--Sobic008G066401 Sobic008G022000 Sobic008G022000 Sobic008G066200--Sobic008G022000 Sobic002G012300 Sobic002G012300 Sobic008G066200--Sobic002G012300 Sobic001G188800 Sobic001G188800 Sobic008G066200--Sobic001G188800 Sobic002G012500--Sobic006G008000 Sobic001G259400 Sobic001G259400 Sobic002G012500--Sobic001G259400 Sobic002G012500--Sobic008G066200 Sobic002G012500--Sobic002G012300 Sobic002G012500--Sobic008G066401 Sobic002G012500--Sobic003G079200 Sobic002G012500--Sobic008G022000 Sobic008G158600 Sobic008G158600 Sobic002G012500--Sobic008G158600 Sobic002G012500--Sobic009G145600 Sobic007G169700--Sobic009G184000 Sobic007G169700--Sobic001G112200 Sobic007G169700--Sobic008G066401 Sobic003G432700 Sobic003G432700 Sobic007G169700--Sobic003G432700 Sobic007G169700--Sobic009G145700 Sobic001G138600 Sobic001G138600 Sobic007G169700--Sobic001G138600 Sobic001G318700 Sobic001G318700 Sobic007G169700--Sobic001G318700 Sobic007G169700--Sobic003G043500 Sobic006G235100 Sobic006G235100 Sobic007G169700--Sobic006G235100 Sobic009G184000--Sobic001G112200 Sobic009G184000--Sobic007G169700 Sobic009G184000--Sobic006G235100 Sobic001G502400 Sobic001G502400 Sobic009G184000--Sobic001G502400 Sobic003G228900 Sobic003G228900 Sobic009G184000--Sobic003G228900 Sobic009G184000--Sobic003G432700 Sobic009G184000--Sobic001G138600 Sobic009G184000--Sobic008G066401 Sobic002G189100 Sobic002G189100 Sobic009G184000--Sobic002G189100 Sobic006G008000--Sobic008G066200 Sobic006G008000--Sobic002G012500 Sobic006G008000--Sobic003G079200 Sobic005G086600 Sobic005G086600 Sobic006G008000--Sobic005G086600 Sobic006G008000--Sobic002G012300 Sobic006G008000--Sobic009G145600 Sobic006G008000--Sobic009G145700 Sobic006G008000--Sobic008G022000 Sobic006G008000--Sobic008G066401 Sobic003G043500--Sobic009G145600 Sobic003G043500--Sobic008G066401 Sobic003G043500--Sobic009G145700 Sobic006G054800 Sobic006G054800 Sobic003G043500--Sobic006G054800 Sobic003G043500--Sobic007G169700 Sobic008G139600 Sobic008G139600 Sobic003G043500--Sobic008G139600 Sobic003G043500--Sobic004G245700 Sobic003G043500--Sobic001G112200 Sobic003G043500--Sobic009G184000 Sobic003G362700--Sobic008G066401 Sobic003G362700--Sobic009G184000 Sobic003G362700--Sobic002G189100 Sobic003G362700--Sobic001G112200 Sobic010G209200 Sobic010G209200 Sobic003G362700--Sobic010G209200 Sobic003G362700--Sobic007G169700 Sobic003G362700--Sobic001G138600 Sobic003G362700--Sobic009G145700 Sobic003G142300 Sobic003G142300 Sobic003G362700--Sobic003G142300
Octagon: transcription factors


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