Gene annotation
Transcriptome id Sobic.006G054800.4,Sobic.006G054800.3,Sobic.006G054800.1,Sobic.006G054800.2
Synonym Sb06g014320,
Functional annotation "glycerophosphodiester phosphodiesterase, up-regulated under drought stress, involved in the final step of the choline biosynthesis pathway, mapped into a QTL involved in stay green (QSTG1_6) " (PubMedID : 24655390)
Glycerophosphodiester phosphodiesterase ( At) (PubMedID : 27208977)
glycerophosphoryl diester phosphodiesterase family protein, putative, expressed
UniProt A0A1Z5RCD7 , A0A1Z5RCV5 , A0A1Z5RD55 , C5YEV9
Pfam PF03009
Panther DB PTHR22958 PTHR22958:SF9
NCBI CDD KOG2421; Predicted starch-binding protein
KEGG Orthology -
Gene Ontology GO:0008081; phosphoric diester hydrolase activity GO:0006629lipid metabolic process


Orthologs (automatic annotation)
TAIR AT3G02040 : PLC-like phosphodiesterases superfamily protein,senescence-related gene 3
RAP-DB (Rice) LOC_Os02g31030.2 : glycerophosphoryl diester phosphodiesterase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a011719 , Zm00025a020433
Brachypodium PNT60970 , PNT60971 , KQJ82390 , PNT60969
Barley HORVU2Hr1G070700.12 , HORVU2Hr1G070700.13 , HORVU2Hr1G070700.10 , HORVU2Hr1G070700.11 , HORVU2Hr1G070700.16 , HORVU2Hr1G070700.17 , HORVU2Hr1G070700.14 , HORVU2Hr1G070700.15 , HORVU2Hr1G070700.8 , HORVU2Hr1G070700.9 , HORVU2Hr1G070700.1 , HORVU2Hr1G070700.2 , HORVU2Hr1G070700.3 , HORVU2Hr1G070700.5 , HORVU2Hr1G070700.6 , HORVU2Hr1G070700.7
Wheat TraesCS2A02G285900 , TraesCS2D02G284700 , TraesCS2B02G303200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G139600 lectin-like receptor kinase, putative, expressed -
2 Sobic.003G043500 - -
3 Sobic.009G145700 peroxidase precursor, putative, expressed K00430: peroxidase
4 Sobic.007G169700 inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed K01240: uridine nucleosidase
5 Sobic.004G141100 Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed K00913: inositol-1,3,4-trisphosphate 5/6-kinase / inositol-tetrakisphosphate 1-kinase
6 Sobic.009G145600 peroxidase precursor, putative, expressed K00430: peroxidase
7 Sobic.001G112200 LTPL118 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
8 Sobic.008G066401 - -
9 Sobic.009G184000 ICE-like protease p20 domain containing protein, putative, expressed -
10 Sobic.003G432700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@secreted glycoprotein, putative, expressed -
11 Sobic.004G237800 glycosyl transferase 8 domain containing protein, putative, expressed -
12 Sobic.010G259300 transferase family protein, putative, expressed -
13 Sobic.004G245700 expressed protein -
14 Sobic.005G186100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@patatin, putative, expressed -
15 Sobic.002G055700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed K01183: chitinase
16 Sobic.003G043600 BAHD acyl transferase(PubMedID : 28944535)@transferase family protein, putative, expressed -
17 Sobic.004G321300 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
18 Sobic.002G189100 beta-glucan-binding protein 4, putative, expressed K01180: endo-1,3(4)-beta-glucanase
19 Sobic.009G151600 AP2 domain containing protein, expressed -
20 Sobic.001G407800 leucoanthocyanidin dioxygenase, putative, expressed -


Gene co-expression network
sample Sobic006G054800 Sobic006G054800 Sobic008G139600 Sobic008G139600 Sobic006G054800--Sobic008G139600 Sobic003G043500 Sobic003G043500 Sobic006G054800--Sobic003G043500 Sobic009G145700 Sobic009G145700 Sobic006G054800--Sobic009G145700 Sobic007G169700 Sobic007G169700 Sobic006G054800--Sobic007G169700 Sobic004G141100 Sobic004G141100 Sobic006G054800--Sobic004G141100 Sobic009G145600 Sobic009G145600 Sobic006G054800--Sobic009G145600 Sobic001G112200 Sobic001G112200 Sobic006G054800--Sobic001G112200 Sobic008G066401 Sobic008G066401 Sobic006G054800--Sobic008G066401 Sobic009G184000 Sobic009G184000 Sobic006G054800--Sobic009G184000 Sobic008G139600--Sobic006G054800 Sobic004G321300 Sobic004G321300 Sobic008G139600--Sobic004G321300 Sobic008G139600--Sobic001G112200 Sobic004G237800 Sobic004G237800 Sobic008G139600--Sobic004G237800 Sobic008G139600--Sobic009G145700 Sobic002G055700 Sobic002G055700 Sobic008G139600--Sobic002G055700 Sobic008G139600--Sobic009G184000 Sobic008G139600--Sobic003G043500 Sobic008G139600--Sobic009G145600 Sobic003G043500--Sobic009G145600 Sobic003G043500--Sobic008G066401 Sobic003G043500--Sobic009G145700 Sobic003G043500--Sobic006G054800 Sobic003G043500--Sobic007G169700 Sobic003G043500--Sobic008G139600 Sobic004G245700 Sobic004G245700 Sobic003G043500--Sobic004G245700 Sobic003G043500--Sobic001G112200 Sobic003G043500--Sobic009G184000 Sobic009G145700--Sobic009G145600 Sobic009G145700--Sobic008G066401 Sobic008G066200 Sobic008G066200 Sobic009G145700--Sobic008G066200 Sobic006G008000 Sobic006G008000 Sobic009G145700--Sobic006G008000 Sobic009G145700--Sobic001G112200 Sobic003G043600 Sobic003G043600 Sobic009G145700--Sobic003G043600 Sobic009G145700--Sobic003G043500 Sobic009G145700--Sobic009G184000 Sobic003G079200 Sobic003G079200 Sobic009G145700--Sobic003G079200 Sobic007G169700--Sobic009G184000 Sobic007G169700--Sobic001G112200 Sobic007G169700--Sobic008G066401 Sobic003G432700 Sobic003G432700 Sobic007G169700--Sobic003G432700 Sobic007G169700--Sobic009G145700 Sobic001G138600 Sobic001G138600 Sobic007G169700--Sobic001G138600 Sobic001G318700 Sobic001G318700 Sobic007G169700--Sobic001G318700 Sobic007G169700--Sobic003G043500 Sobic006G235100 Sobic006G235100 Sobic007G169700--Sobic006G235100 Sobic002G351300 Sobic002G351300 Sobic004G141100--Sobic002G351300 Sobic004G141100--Sobic006G235100 Sobic010G082600 Sobic010G082600 Sobic004G141100--Sobic010G082600 Sobic007G017500 Sobic007G017500 Sobic004G141100--Sobic007G017500 Sobic006G075400 Sobic006G075400 Sobic004G141100--Sobic006G075400 Sobic008G009400 Sobic008G009400 Sobic004G141100--Sobic008G009400 Sobic004G141100--Sobic006G054800 Sobic004G141100--Sobic006G008000 Sobic004G141100--Sobic008G066401 Sobic009G145600--Sobic009G145700 Sobic009G145600--Sobic008G066401 Sobic009G145600--Sobic008G066200 Sobic009G145600--Sobic003G079200 Sobic009G145600--Sobic006G008000 Sobic009G145600--Sobic003G043500 Sobic009G145600--Sobic004G245700 Sobic002G012500 Sobic002G012500 Sobic009G145600--Sobic002G012500 Sobic009G200566 Sobic009G200566 Sobic009G145600--Sobic009G200566 Sobic001G112200--Sobic009G184000 Sobic001G112200--Sobic001G318700 Sobic001G112200--Sobic001G138600 Sobic003G369100 Sobic003G369100 Sobic001G112200--Sobic003G369100 Sobic001G112200--Sobic007G169700 Sobic001G112200--Sobic004G237800 Sobic001G112200--Sobic009G145700 Sobic007G074000 Sobic007G074000 Sobic001G112200--Sobic007G074000 Sobic001G310600 Sobic001G310600 Sobic001G112200--Sobic001G310600 Sobic008G066401--Sobic009G145700 Sobic008G066401--Sobic009G145600 Sobic008G066401--Sobic008G066200 Sobic008G066401--Sobic002G012500 Sobic008G066401--Sobic007G169700 Sobic008G066401--Sobic009G184000 Sobic008G066401--Sobic006G008000 Sobic008G066401--Sobic003G043500 Sobic003G362700 Sobic003G362700 Sobic008G066401--Sobic003G362700 Sobic009G184000--Sobic001G112200 Sobic009G184000--Sobic007G169700 Sobic009G184000--Sobic006G235100 Sobic001G502400 Sobic001G502400 Sobic009G184000--Sobic001G502400 Sobic003G228900 Sobic003G228900 Sobic009G184000--Sobic003G228900 Sobic009G184000--Sobic003G432700 Sobic009G184000--Sobic001G138600 Sobic009G184000--Sobic008G066401 Sobic002G189100 Sobic002G189100 Sobic009G184000--Sobic002G189100
Octagon: transcription factors


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