Gene annotation
Transcriptome id Sobic.001G407800.1
Synonym Sb01g038520
Functional annotation leucoanthocyanidin dioxygenase, putative, expressed
UniProt C5WNJ8
Pfam PF14226 PF03171
Panther DB PTHR10209 PTHR10209:SF149
NCBI CDD KOG0143; Iron/ascorbate family oxidoreductases
KEGG Orthology -
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT3G11180 : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
RAP-DB (Rice) LOC_Os03g18030.1 : leucoanthocyanidin dioxygenase, putative, expressed
MaizeGDB (Corn) Zm00025a040720 , Zm00025a001977 , Zm00025a039721 , Zm00025a052680 , Zm00025a026996
Brachypodium KQK22172
Barley HORVU4Hr1G056500.4 , HORVU4Hr1G056500.5 , HORVU4Hr1G056500.1 , HORVU4Hr1G056500.2 , HORVU4Hr1G056500.3 , HORVU1Hr1G015050.7 , HORVU1Hr1G015050.5 , HORVU3Hr1G087570.1 , HORVU3Hr1G087570.2 , HORVU3Hr1G087570.3 , HORVU3Hr1G087570.4
Wheat TraesCS4A02G109200 , TraesCS3D02G345600 , TraesCS4B02G195000 , TraesCS4B02G195000 , TraesCS3A02G351400 , TraesCS3A02G351400 , TraesCS4B02G328300 , TraesCS1A02G070200 , TraesCS1B02G088600 , TraesCS3B02G383900 , TraesCS4D02G195700
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G333400 KI domain interacting kinase 1, putative, expressed -
2 Sobic.009G036100 similar to Hydrophobic protein LTI6B(PubMedID : 29862293)@OsRCI2-6 - Hydrophobic protein LTI6B, expressed -
3 Sobic.006G056400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc-finger protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
4 Sobic.004G237800 glycosyl transferase 8 domain containing protein, putative, expressed -
5 Sobic.007G074000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@- -
6 Sobic.005G186100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@patatin, putative, expressed -
7 Sobic.010G259300 transferase family protein, putative, expressed -
8 Sobic.003G369100 AP2 domain containing protein, expressed -
9 Sobic.008G139600 lectin-like receptor kinase, putative, expressed -
10 Sobic.003G334600 NAC domain transcription factor, putative, expressed -
11 Sobic.002G140400 plastocyanin-like domain containing protein, putative, expressed -
12 Sobic.009G151600 AP2 domain containing protein, expressed -
13 Sobic.003G158500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@abscisic stress-ripening, putative, expressed -
14 Sobic.006G054800 "glycerophosphodiester phosphodiesterase, up-regulated under drought stress, involved in the final step of the choline biosynthesis pathway, mapped into a QTL involved in stay green (QSTG1_6) "(PubMedID : 24655390)@Glycerophosphodiester phosphodiesterase ( At)(PubMedID : 27208977)@glycerophosphoryl diester phosphodiesterase family protein, putative, expressed -
15 Sobic.004G065500 chorismate mutase, chloroplast precursor, putative, expressed K01850: chorismate mutase
16 Sobic.004G321300 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
17 Sobic.003G345100 flavonol synthase/flavanone 3-hydroxylase, putative, expressed -
18 Sobic.002G082600 DUF567 domain containing protein, putative, expressed -
19 Sobic.001G112200 LTPL118 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
20 Sobic.008G136400 expressed protein -


Gene co-expression network
sample Sobic001G407800 Sobic001G407800 Sobic002G333400 Sobic002G333400 Sobic001G407800--Sobic002G333400 Sobic009G036100 Sobic009G036100 Sobic001G407800--Sobic009G036100 Sobic006G056400 Sobic006G056400 Sobic001G407800--Sobic006G056400 Sobic004G237800 Sobic004G237800 Sobic001G407800--Sobic004G237800 Sobic007G074000 Sobic007G074000 Sobic001G407800--Sobic007G074000 Sobic005G186100 Sobic005G186100 Sobic001G407800--Sobic005G186100 Sobic010G259300 Sobic010G259300 Sobic001G407800--Sobic010G259300 Sobic003G369100 Sobic003G369100 Sobic001G407800--Sobic003G369100 Sobic008G139600 Sobic008G139600 Sobic001G407800--Sobic008G139600 Sobic002G333400--Sobic001G407800 Sobic006G158600 Sobic006G158600 Sobic002G333400--Sobic006G158600 Sobic002G333400--Sobic006G056400 Sobic008G136400 Sobic008G136400 Sobic002G333400--Sobic008G136400 Sobic002G333400--Sobic005G186100 Sobic002G333400--Sobic003G369100 Sobic009G151600 Sobic009G151600 Sobic002G333400--Sobic009G151600 Sobic002G140400 Sobic002G140400 Sobic002G333400--Sobic002G140400 Sobic002G333400--Sobic007G074000 Sobic009G036000 Sobic009G036000 Sobic009G036100--Sobic009G036000 Sobic009G036100--Sobic007G074000 Sobic001G320900 Sobic001G320900 Sobic009G036100--Sobic001G320900 Sobic009G036100--Sobic001G407800 Sobic009G247900 Sobic009G247900 Sobic009G036100--Sobic009G247900 Sobic002G140300 Sobic002G140300 Sobic009G036100--Sobic002G140300 Sobic009G036100--Sobic003G369100 Sobic003G324400 Sobic003G324400 Sobic009G036100--Sobic003G324400 Sobic001G258300 Sobic001G258300 Sobic009G036100--Sobic001G258300 Sobic006G056400--Sobic002G333400 Sobic006G056400--Sobic006G158600 Sobic006G056400--Sobic008G136400 Sobic006G056400--Sobic003G369100 Sobic006G056400--Sobic005G186100 Sobic006G056400--Sobic002G140400 Sobic006G056400--Sobic007G074000 Sobic001G318700 Sobic001G318700 Sobic006G056400--Sobic001G318700 Sobic001G308300 Sobic001G308300 Sobic006G056400--Sobic001G308300 Sobic004G237800--Sobic007G074000 Sobic004G321300 Sobic004G321300 Sobic004G237800--Sobic004G321300 Sobic002G336600 Sobic002G336600 Sobic004G237800--Sobic002G336600 Sobic004G189400 Sobic004G189400 Sobic004G237800--Sobic004G189400 Sobic002G055700 Sobic002G055700 Sobic004G237800--Sobic002G055700 Sobic004G237800--Sobic002G140400 Sobic005G091500 Sobic005G091500 Sobic004G237800--Sobic005G091500 Sobic001G112200 Sobic001G112200 Sobic004G237800--Sobic001G112200 Sobic005G063100 Sobic005G063100 Sobic004G237800--Sobic005G063100 Sobic007G074000--Sobic003G369100 Sobic004G141200 Sobic004G141200 Sobic007G074000--Sobic004G141200 Sobic007G074000--Sobic004G237800 Sobic007G074000--Sobic002G140400 Sobic003G228900 Sobic003G228900 Sobic007G074000--Sobic003G228900 Sobic007G074000--Sobic002G336600 Sobic003G364600 Sobic003G364600 Sobic007G074000--Sobic003G364600 Sobic001G138600 Sobic001G138600 Sobic007G074000--Sobic001G138600 Sobic007G074000--Sobic009G247900 Sobic005G186100--Sobic001G138600 Sobic005G186100--Sobic001G112200 Sobic005G186100--Sobic006G056400 Sobic005G186100--Sobic002G333400 Sobic005G186100--Sobic001G318700 Sobic005G186100--Sobic003G228900 Sobic001G481100 Sobic001G481100 Sobic005G186100--Sobic001G481100 Sobic001G079300 Sobic001G079300 Sobic005G186100--Sobic001G079300 Sobic009G184000 Sobic009G184000 Sobic005G186100--Sobic009G184000 Sobic003G093000 Sobic003G093000 Sobic010G259300--Sobic003G093000 Sobic002G189100 Sobic002G189100 Sobic010G259300--Sobic002G189100 Sobic010G259300--Sobic001G407800 Sobic006G054800 Sobic006G054800 Sobic010G259300--Sobic006G054800 Sobic010G259300--Sobic008G139600 Sobic002G220000 Sobic002G220000 Sobic010G259300--Sobic002G220000 Sobic010G259300--Sobic004G237800 Sobic001G247300 Sobic001G247300 Sobic010G259300--Sobic001G247300 Sobic003G043500 Sobic003G043500 Sobic010G259300--Sobic003G043500 Sobic003G369100--Sobic004G141200 Sobic003G369100--Sobic007G074000 Sobic003G369100--Sobic001G138600 Sobic001G108200 Sobic001G108200 Sobic003G369100--Sobic001G108200 Sobic001G140900 Sobic001G140900 Sobic003G369100--Sobic001G140900 Sobic003G369100--Sobic001G112200 Sobic003G345100 Sobic003G345100 Sobic003G369100--Sobic003G345100 Sobic008G050600 Sobic008G050600 Sobic003G369100--Sobic008G050600 Sobic003G369100--Sobic001G308300 Sobic008G139600--Sobic006G054800 Sobic008G139600--Sobic004G321300 Sobic008G139600--Sobic001G112200 Sobic008G139600--Sobic004G237800 Sobic009G145700 Sobic009G145700 Sobic008G139600--Sobic009G145700 Sobic008G139600--Sobic002G055700 Sobic008G139600--Sobic009G184000 Sobic008G139600--Sobic003G043500 Sobic009G145600 Sobic009G145600 Sobic008G139600--Sobic009G145600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.