Gene annotation
Transcriptome id Sobic.002G353800.1
Synonym Sb02g037560, ATHB40, HB40, HB-5
Functional annotation homeobox domain containing protein, expressed
UniProt C5XCG1
Pfam PF00046
Panther DB PTHR24326 PTHR24326:SF157
NCBI CDD -
KEGG Orthology K09338; homeobox-leucine zipper protein
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT4G36740 : homeobox protein 40
RAP-DB (Rice) LOC_Os07g39320.1 : homeobox domain containing protein, expressed
MaizeGDB (Corn) Zm00025a053163 , Zm00025a014128 , Zm00025a048515 , Zm00025a001186 , Zm00025a015018 , Zm00025a047342
Brachypodium KQK15524 , KQJ90600
Barley HORVU4Hr1G078410.4 , HORVU4Hr1G078410.5 , HORVU4Hr1G078410.2 , HORVU4Hr1G078410.3 , HORVU6Hr1G072810.4 , HORVU5Hr1G070260.1 , HORVU5Hr1G070260.3 , HORVU5Hr1G070260.5 , HORVU2Hr1G092290.6 , HORVU2Hr1G092290.7 , HORVU2Hr1G092290.4 , HORVU2Hr1G092290.5 , HORVU2Hr1G092290.2 , HORVU2Hr1G092290.3 , HORVU4Hr1G070610.1 , HORVU4Hr1G070610.2 , HORVU4Hr1G070610.3 , HORVU4Hr1G070610.4 , HORVU4Hr1G070610.5 , HORVU4Hr1G070610.6 , HORVU4Hr1G070610.7 , HORVU6Hr1G072810.6 , HORVU6Hr1G072810.7 , HORVU6Hr1G072810.5 , HORVU6Hr1G072810.2 , HORVU6Hr1G072810.1 , HORVU2Hr1G092300.1 , HORVU2Hr1G036680.5 , HORVU2Hr1G036680.4 , HORVU2Hr1G036680.3 , HORVU2Hr1G036680.2 , HORVU2Hr1G036680.1
Wheat TraesCS2B02G218800 , TraesCS6B02G321100 , TraesCS6D02G272000 , TraesCS6D02G272000 , TraesCS4B02G305300 , TraesCS5A02G249000 , TraesCS5D02G256200 , TraesCS4A02G405800 , TraesCS4D02G303500 , TraesCS5B02G246700 , TraesCS2D02G199200 , TraesCS6A02G290800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G075900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed K09874: aquaporin NIP
2 Sobic.003G303100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@dynein light chain type 1 domain containing protein, expressed K10418: dynein light chain LC8-type
3 Sobic.004G203700 ubiquitin family protein, putative, expressed -
4 Sobic.009G159200 guanylyl cyclase, putative, expressed -
5 Sobic.001G004800 receptor protein kinase, putative, expressed -
6 Sobic.001G372100 beta-amylase 3(PubMedID : 26465154)@beta-amylase 3(PubMedID : 26465154)@beta-amylase, putative, expressed -
7 Sobic.001G070800 expressed protein -
8 Sobic.008G050600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor ERF110, putative, expressed -
9 Sobic.003G345100 flavonol synthase/flavanone 3-hydroxylase, putative, expressed -
10 Sobic.002G055700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed K01183: chitinase
11 Sobic.005G063100 expressed protein -
12 Sobic.009G168900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed -
13 Sobic.010G176600 - -
14 Sobic.001G025300 hydrolase, alpha/beta fold family domain containing protein, expressed -
15 Sobic.006G154500 GEM, putative, expressed -
16 Sobic.002G416600 peroxidase precursor, putative, expressed K00430: peroxidase
17 Sobic.001G038900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF567 domain containing protein, putative, expressed -
18 Sobic.001G140900 helix-loop-helix DNA-binding protein, putative, expressed -
19 Sobic.003G426400 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
20 Sobic.009G077800 expressed protein -


Gene co-expression network
sample Sobic002G353800 Sobic002G353800 Sobic009G075900 Sobic009G075900 Sobic002G353800--Sobic009G075900 Sobic003G303100 Sobic003G303100 Sobic002G353800--Sobic003G303100 Sobic004G203700 Sobic004G203700 Sobic002G353800--Sobic004G203700 Sobic009G159200 Sobic009G159200 Sobic002G353800--Sobic009G159200 Sobic001G004800 Sobic001G004800 Sobic002G353800--Sobic001G004800 Sobic001G372100 Sobic001G372100 Sobic002G353800--Sobic001G372100 Sobic001G070800 Sobic001G070800 Sobic002G353800--Sobic001G070800 Sobic008G050600 Sobic008G050600 Sobic002G353800--Sobic008G050600 Sobic003G345100 Sobic003G345100 Sobic002G353800--Sobic003G345100 Sobic009G075900--Sobic002G353800 Sobic002G416600 Sobic002G416600 Sobic009G075900--Sobic002G416600 Sobic009G075900--Sobic003G303100 Sobic004G225900 Sobic004G225900 Sobic009G075900--Sobic004G225900 Sobic001G025300 Sobic001G025300 Sobic009G075900--Sobic001G025300 Sobic009G075900--Sobic009G159200 Sobic003G087300 Sobic003G087300 Sobic009G075900--Sobic003G087300 Sobic009G075900--Sobic001G070800 Sobic006G154500 Sobic006G154500 Sobic009G075900--Sobic006G154500 Sobic002G055700 Sobic002G055700 Sobic003G303100--Sobic002G055700 Sobic001G318700 Sobic001G318700 Sobic003G303100--Sobic001G318700 Sobic004G189400 Sobic004G189400 Sobic003G303100--Sobic004G189400 Sobic003G382600 Sobic003G382600 Sobic003G303100--Sobic003G382600 Sobic004G237800 Sobic004G237800 Sobic003G303100--Sobic004G237800 Sobic003G426400 Sobic003G426400 Sobic003G303100--Sobic003G426400 Sobic004G148200 Sobic004G148200 Sobic003G303100--Sobic004G148200 Sobic005G029200 Sobic005G029200 Sobic003G303100--Sobic005G029200 Sobic005G063100 Sobic005G063100 Sobic003G303100--Sobic005G063100 Sobic004G203700--Sobic003G303100 Sobic004G203700--Sobic002G055700 Sobic002G338500 Sobic002G338500 Sobic004G203700--Sobic002G338500 Sobic001G318500 Sobic001G318500 Sobic004G203700--Sobic001G318500 Sobic004G203700--Sobic003G426400 Sobic003G043600 Sobic003G043600 Sobic004G203700--Sobic003G043600 Sobic004G203700--Sobic003G382600 Sobic002G200600 Sobic002G200600 Sobic004G203700--Sobic002G200600 Sobic001G367600 Sobic001G367600 Sobic004G203700--Sobic001G367600 Sobic007G197600 Sobic007G197600 Sobic009G159200--Sobic007G197600 Sobic007G177100 Sobic007G177100 Sobic009G159200--Sobic007G177100 Sobic009G159200--Sobic002G353800 Sobic009G159200--Sobic001G070800 Sobic006G157500 Sobic006G157500 Sobic009G159200--Sobic006G157500 Sobic009G159200--Sobic009G075900 Sobic003G379800 Sobic003G379800 Sobic009G159200--Sobic003G379800 Sobic003G393700 Sobic003G393700 Sobic009G159200--Sobic003G393700 Sobic009G159200--Sobic004G203700 Sobic001G004800--Sobic004G203700 Sobic001G004800--Sobic002G353800 Sobic006G137800 Sobic006G137800 Sobic001G004800--Sobic006G137800 Sobic001G313200 Sobic001G313200 Sobic001G004800--Sobic001G313200 Sobic002G389400 Sobic002G389400 Sobic001G004800--Sobic002G389400 Sobic001G112200 Sobic001G112200 Sobic001G004800--Sobic001G112200 Sobic004G301300 Sobic004G301300 Sobic001G004800--Sobic004G301300 Sobic001G529400 Sobic001G529400 Sobic001G004800--Sobic001G529400 Sobic001G004800--Sobic002G055700 Sobic009G168900 Sobic009G168900 Sobic001G372100--Sobic009G168900 Sobic001G372100--Sobic006G157500 Sobic001G372100--Sobic001G112200 Sobic001G138600 Sobic001G138600 Sobic001G372100--Sobic001G138600 Sobic001G372100--Sobic001G318700 Sobic009G184000 Sobic009G184000 Sobic001G372100--Sobic009G184000 Sobic003G369100 Sobic003G369100 Sobic001G372100--Sobic003G369100 Sobic003G260300 Sobic003G260300 Sobic001G372100--Sobic003G260300 Sobic003G362700 Sobic003G362700 Sobic001G372100--Sobic003G362700 Sobic003G297600 Sobic003G297600 Sobic001G070800--Sobic003G297600 Sobic009G077800 Sobic009G077800 Sobic001G070800--Sobic009G077800 Sobic001G070800--Sobic003G393700 Sobic001G070800--Sobic002G416600 Sobic009G139400 Sobic009G139400 Sobic001G070800--Sobic009G139400 Sobic001G177800 Sobic001G177800 Sobic001G070800--Sobic001G177800 Sobic001G317200 Sobic001G317200 Sobic001G070800--Sobic001G317200 Sobic006G099900 Sobic006G099900 Sobic001G070800--Sobic006G099900 Sobic001G252300 Sobic001G252300 Sobic001G070800--Sobic001G252300 Sobic008G050600--Sobic003G345100 Sobic001G140900 Sobic001G140900 Sobic008G050600--Sobic001G140900 Sobic008G050600--Sobic005G063100 Sobic003G286600 Sobic003G286600 Sobic008G050600--Sobic003G286600 Sobic009G164600 Sobic009G164600 Sobic008G050600--Sobic009G164600 Sobic001G038900 Sobic001G038900 Sobic008G050600--Sobic001G038900 Sobic008G136400 Sobic008G136400 Sobic008G050600--Sobic008G136400 Sobic008G050600--Sobic004G189400 Sobic005G051200 Sobic005G051200 Sobic008G050600--Sobic005G051200 Sobic003G345100--Sobic008G050600 Sobic003G345100--Sobic005G063100 Sobic003G345100--Sobic009G164600 Sobic003G345100--Sobic001G140900 Sobic004G208700 Sobic004G208700 Sobic003G345100--Sobic004G208700 Sobic005G099000 Sobic005G099000 Sobic003G345100--Sobic005G099000 Sobic009G159400 Sobic009G159400 Sobic003G345100--Sobic009G159400 Sobic003G345100--Sobic003G369100 Sobic001G435000 Sobic001G435000 Sobic003G345100--Sobic001G435000
Octagon: transcription factors


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