Gene annotation
| Transcriptome id | Sobic.001G004800.1 |
|---|---|
| Synonym | Sb01g000530 |
| Functional annotation | receptor protein kinase, putative, expressed |
| UniProt | C5WRX2 |
| Pfam | PF03629 |
| Panther DB | PTHR31988 PTHR31988:SF3 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT3G53010 : Domain of unknown function (DUF303) |
|---|---|
| RAP-DB (Rice) | LOC_Os03g64050.1 : receptor protein kinase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a009114 , Zm00025a045869 |
| Brachypodium | KQK12002 |
| Barley | HORVU7Hr1G002320.2 , HORVU7Hr1G002380.1 , HORVU7Hr1G002380.2 , HORVU7Hr1G002380.3 , HORVU7Hr1G002380.4 , HORVU7Hr1G002280.3 , HORVU7Hr1G002280.2 , HORVU7Hr1G002280.1 |
| Wheat | TraesCS5B02G560600 , TraesCS7A02G022000 , TraesCS4A02G470300 , TraesCS7A02G022200 , TraesCS4A02G318800 , TraesCS4A02G470700 , TraesCS7D02G018600 , TraesCS5D02G569600 , TraesCS7A02G021300 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.004G203700 | ubiquitin family protein, putative, expressed | - |
| 2 | Sobic.002G353800 | homeobox domain containing protein, expressed | K09338: homeobox-leucine zipper protein |
| 3 | Sobic.006G137800 | expressed protein | - |
| 4 | Sobic.001G313200 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed | K11254: histone H4 |
| 5 | Sobic.002G389400 | OsRCI2-10 - Hydrophobic protein LTI6A, expressed | - |
| 6 | Sobic.001G112200 | LTPL118 - Protease inhibitor/seed storage/LTP family protein precursor, expressed | - |
| 7 | Sobic.004G301300 | zinc finger, C3HC4 type domain containing protein, expressed | - |
| 8 | Sobic.001G529400 | Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed | K11254: histone H4 |
| 9 | Sobic.002G055700 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed | K01183: chitinase |
| 10 | Sobic.001G076800 | expressed protein | - |
| 11 | Sobic.004G271400 | L11 domain containing ribosomal protein, putative, expressed | K02870: RP-L12e, large subunit ribosomal protein L12e |
| 12 | Sobic.008G139600 | lectin-like receptor kinase, putative, expressed | - |
| 13 | Sobic.003G043600 | BAHD acyl transferase(PubMedID : 28944535)@transferase family protein, putative, expressed | - |
| 14 | Sobic.001G310600 | expressed protein | - |
| 15 | Sobic.001G435000 | gibberellin receptor GID1L2, putative, expressed | - |
| 16 | Sobic.009G159400 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@universal stress protein domain containing protein, putative, expressed | - |
| 17 | Sobic.010G221300 | expressed protein | - |
| 18 | Sobic.003G303100 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@dynein light chain type 1 domain containing protein, expressed | K10418: dynein light chain LC8-type |
| 19 | Sobic.001G140900 | helix-loop-helix DNA-binding protein, putative, expressed | - |
| 20 | Sobic.002G338500 | sugar transporter 1(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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