Gene annotation
Transcriptome id Sobic.004G301300.1
Synonym Sb04g033460
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt A0A194YTG1
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF74
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT5G47610 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os02g43120.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a020950 , Zm00025a046836
Brachypodium KQK00534 , KQJ91398
Barley HORVU6Hr1G061040.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G203700 ubiquitin family protein, putative, expressed -
2 Sobic.003G027400 VQ domain containing protein, putative, expressed -
3 Sobic.001G295200 nucleoside diphosphate kinase, putative, expressed K00940: ndk, nucleoside-diphosphate kinase
4 Sobic.005G107900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein O-methyltransferase ZRP4 (Zm)(PubMedID : 27208977)@O-methyltransferase, putative, expressed -
5 Sobic.007G008100 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
6 Sobic.009G154200 MYB family transcription factor, putative, expressed -
7 Sobic.001G169500 - -
8 Sobic.009G159400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@universal stress protein domain containing protein, putative, expressed -
9 Sobic.002G329800 expressed protein -
10 Sobic.004G336500 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@OsIAA9 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
11 Sobic.006G141700 OsGrx_C2.2 - glutaredoxin subgroup I, expressed K03676: grxC, GLRX, glutaredoxin 3
12 Sobic.001G361600 chaperonin, putative, expressed K04078: groES, chaperonin GroES
13 Sobic.003G084400 ZOS1-03 - C2H2 zinc finger protein, expressed -
14 Sobic.001G036900 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
15 Sobic.010G221300 expressed protein -
16 Sobic.003G319500 receptor protein kinase, putative, expressed -
17 Sobic.001G502400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@RING-H2 finger protein ATL3F, putative, expressed -
18 Sobic.003G432700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@secreted glycoprotein, putative, expressed -
19 Sobic.008G139600 lectin-like receptor kinase, putative, expressed -
20 Sobic.003G426400 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase


Gene co-expression network
sample Sobic004G301300 Sobic004G301300 Sobic004G203700 Sobic004G203700 Sobic004G301300--Sobic004G203700 Sobic003G027400 Sobic003G027400 Sobic004G301300--Sobic003G027400 Sobic001G295200 Sobic001G295200 Sobic004G301300--Sobic001G295200 Sobic005G107900 Sobic005G107900 Sobic004G301300--Sobic005G107900 Sobic007G008100 Sobic007G008100 Sobic004G301300--Sobic007G008100 Sobic009G154200 Sobic009G154200 Sobic004G301300--Sobic009G154200 Sobic001G169500 Sobic001G169500 Sobic004G301300--Sobic001G169500 Sobic009G159400 Sobic009G159400 Sobic004G301300--Sobic009G159400 Sobic002G329800 Sobic002G329800 Sobic004G301300--Sobic002G329800 Sobic003G303100 Sobic003G303100 Sobic004G203700--Sobic003G303100 Sobic002G055700 Sobic002G055700 Sobic004G203700--Sobic002G055700 Sobic002G338500 Sobic002G338500 Sobic004G203700--Sobic002G338500 Sobic001G318500 Sobic001G318500 Sobic004G203700--Sobic001G318500 Sobic003G426400 Sobic003G426400 Sobic004G203700--Sobic003G426400 Sobic003G043600 Sobic003G043600 Sobic004G203700--Sobic003G043600 Sobic003G382600 Sobic003G382600 Sobic004G203700--Sobic003G382600 Sobic002G200600 Sobic002G200600 Sobic004G203700--Sobic002G200600 Sobic001G367600 Sobic001G367600 Sobic004G203700--Sobic001G367600 Sobic003G160700 Sobic003G160700 Sobic003G027400--Sobic003G160700 Sobic006G249300 Sobic006G249300 Sobic003G027400--Sobic006G249300 Sobic009G248100 Sobic009G248100 Sobic003G027400--Sobic009G248100 Sobic010G221300 Sobic010G221300 Sobic003G027400--Sobic010G221300 Sobic001G481000 Sobic001G481000 Sobic003G027400--Sobic001G481000 Sobic005G113300 Sobic005G113300 Sobic003G027400--Sobic005G113300 Sobic002G387900 Sobic002G387900 Sobic003G027400--Sobic002G387900 Sobic003G084400 Sobic003G084400 Sobic003G027400--Sobic003G084400 Sobic003G027400--Sobic002G200600 Sobic006G141700 Sobic006G141700 Sobic001G295200--Sobic006G141700 Sobic001G018900 Sobic001G018900 Sobic001G295200--Sobic001G018900 Sobic006G116700 Sobic006G116700 Sobic001G295200--Sobic006G116700 Sobic001G361600 Sobic001G361600 Sobic001G295200--Sobic001G361600 Sobic001G295200--Sobic005G113300 Sobic003G078200 Sobic003G078200 Sobic001G295200--Sobic003G078200 Sobic001G036900 Sobic001G036900 Sobic001G295200--Sobic001G036900 Sobic007G197800 Sobic007G197800 Sobic001G295200--Sobic007G197800 Sobic009G215200 Sobic009G215200 Sobic001G295200--Sobic009G215200 Sobic001G502400 Sobic001G502400 Sobic005G107900--Sobic001G502400 Sobic001G313600 Sobic001G313600 Sobic005G107900--Sobic001G313600 Sobic003G432700 Sobic003G432700 Sobic005G107900--Sobic003G432700 Sobic005G011300 Sobic005G011300 Sobic005G107900--Sobic005G011300 Sobic006G235100 Sobic006G235100 Sobic005G107900--Sobic006G235100 Sobic006G075400 Sobic006G075400 Sobic005G107900--Sobic006G075400 Sobic009G184000 Sobic009G184000 Sobic005G107900--Sobic009G184000 Sobic009G188000 Sobic009G188000 Sobic005G107900--Sobic009G188000 Sobic005G107900--Sobic001G169500 Sobic002G042000 Sobic002G042000 Sobic007G008100--Sobic002G042000 Sobic001G054500 Sobic001G054500 Sobic007G008100--Sobic001G054500 Sobic004G336500 Sobic004G336500 Sobic007G008100--Sobic004G336500 Sobic003G364300 Sobic003G364300 Sobic007G008100--Sobic003G364300 Sobic007G008000 Sobic007G008000 Sobic007G008100--Sobic007G008000 Sobic009G069800 Sobic009G069800 Sobic007G008100--Sobic009G069800 Sobic007G008100--Sobic009G154200 Sobic008G139600 Sobic008G139600 Sobic007G008100--Sobic008G139600 Sobic002G040900 Sobic002G040900 Sobic007G008100--Sobic002G040900 Sobic009G154200--Sobic007G008100 Sobic009G154200--Sobic003G364300 Sobic009G154200--Sobic004G336500 Sobic010G156500 Sobic010G156500 Sobic009G154200--Sobic010G156500 Sobic009G154200--Sobic003G382600 Sobic009G231000 Sobic009G231000 Sobic009G154200--Sobic009G231000 Sobic001G279500 Sobic001G279500 Sobic009G154200--Sobic001G279500 Sobic003G345100 Sobic003G345100 Sobic009G154200--Sobic003G345100 Sobic001G112200 Sobic001G112200 Sobic009G154200--Sobic001G112200 Sobic001G169500--Sobic005G011300 Sobic004G100700 Sobic004G100700 Sobic001G169500--Sobic004G100700 Sobic005G099000 Sobic005G099000 Sobic001G169500--Sobic005G099000 Sobic003G382800 Sobic003G382800 Sobic001G169500--Sobic003G382800 Sobic001G169500--Sobic004G336500 Sobic001G169500--Sobic003G432700 Sobic001G169500--Sobic006G249300 Sobic001G169500--Sobic005G107900 Sobic002G068600 Sobic002G068600 Sobic001G169500--Sobic002G068600 Sobic001G038900 Sobic001G038900 Sobic009G159400--Sobic001G038900 Sobic001G435000 Sobic001G435000 Sobic009G159400--Sobic001G435000 Sobic004G321300 Sobic004G321300 Sobic009G159400--Sobic004G321300 Sobic009G159400--Sobic003G345100 Sobic004G208700 Sobic004G208700 Sobic009G159400--Sobic004G208700 Sobic001G140900 Sobic001G140900 Sobic009G159400--Sobic001G140900 Sobic008G050600 Sobic008G050600 Sobic009G159400--Sobic008G050600 Sobic010G259600 Sobic010G259600 Sobic009G159400--Sobic010G259600 Sobic004G237800 Sobic004G237800 Sobic009G159400--Sobic004G237800 Sobic002G203700 Sobic002G203700 Sobic002G329800--Sobic002G203700 Sobic002G329800--Sobic004G203700 Sobic002G389400 Sobic002G389400 Sobic002G329800--Sobic002G389400 Sobic002G329800--Sobic003G084400 Sobic002G329800--Sobic010G156500 Sobic002G329800--Sobic009G231000 Sobic005G183100 Sobic005G183100 Sobic002G329800--Sobic005G183100 Sobic002G329800--Sobic009G159400 Sobic010G213700 Sobic010G213700 Sobic002G329800--Sobic010G213700
Octagon: transcription factors


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