Gene annotation
Transcriptome id Sobic.003G027400.1
Synonym Sb03g002570
Functional annotation VQ domain containing protein, putative, expressed
UniProt C5XL90
Pfam PF05678
Panther DB PTHR33402 PTHR33402:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G28280 : VQ motif-containing protein
RAP-DB (Rice) LOC_Os01g54400.1 : VQ domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a022975 , Zm00025a035860
Brachypodium KQK03202
Barley HORVU3Hr1G026840.1 , HORVU3Hr1G071320.1
Wheat -
Populus -


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cDNA sequences
Sobic.003G027400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G160700 RALFL8 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
2 Sobic.006G249300 expressed protein -
3 Sobic.009G248100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.010G221300 expressed protein -
5 Sobic.001G481000 expressed protein -
6 Sobic.005G113300 -(PubMedID : 26976818)@serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed K00600: glyA, glycine hydroxymethyltransferase
7 Sobic.002G387900 expressed protein -
8 Sobic.003G084400 ZOS1-03 - C2H2 zinc finger protein, expressed -
9 Sobic.002G200600 60S ribosomal protein L34, putative, expressed K02915: RP-L34e, large subunit ribosomal protein L34e
10 Sobic.006G137800 expressed protein -
11 Sobic.003G436700 40S ribosomal protein S10, putative, expressed K02947: RP-S10e, small subunit ribosomal protein S10e
12 Sobic.001G169500 - -
13 Sobic.004G100700 ethylene-responsive transcription factor TINY, putative, expressed K09286: EREBP-like factor
14 Sobic.004G301300 zinc finger, C3HC4 type domain containing protein, expressed -
15 Sobic.003G321200 pectinesterase, putative, expressed K01051: pectinesterase
16 Sobic.003G117500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RALFL9 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
17 Sobic.009G181800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 9484480)@cytochrome P450, putative, expressed K09754: CYP98A, 5-O-(4-coumaroyl)-D-quinate 3'-monooxygenase
18 Sobic.001G295200 nucleoside diphosphate kinase, putative, expressed K00940: ndk, nucleoside-diphosphate kinase
19 Sobic.006G116700 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
20 Sobic.005G011300 peroxidase precursor, putative, expressed K00430: peroxidase


Gene co-expression network
sample Sobic003G027400 Sobic003G027400 Sobic003G160700 Sobic003G160700 Sobic003G027400--Sobic003G160700 Sobic006G249300 Sobic006G249300 Sobic003G027400--Sobic006G249300 Sobic009G248100 Sobic009G248100 Sobic003G027400--Sobic009G248100 Sobic010G221300 Sobic010G221300 Sobic003G027400--Sobic010G221300 Sobic001G481000 Sobic001G481000 Sobic003G027400--Sobic001G481000 Sobic005G113300 Sobic005G113300 Sobic003G027400--Sobic005G113300 Sobic002G387900 Sobic002G387900 Sobic003G027400--Sobic002G387900 Sobic003G084400 Sobic003G084400 Sobic003G027400--Sobic003G084400 Sobic002G200600 Sobic002G200600 Sobic003G027400--Sobic002G200600 Sobic003G160700--Sobic005G113300 Sobic004G041900 Sobic004G041900 Sobic003G160700--Sobic004G041900 Sobic003G125650 Sobic003G125650 Sobic003G160700--Sobic003G125650 Sobic003G078200 Sobic003G078200 Sobic003G160700--Sobic003G078200 Sobic001G475500 Sobic001G475500 Sobic003G160700--Sobic001G475500 Sobic001G502900 Sobic001G502900 Sobic003G160700--Sobic001G502900 Sobic004G220000 Sobic004G220000 Sobic003G160700--Sobic004G220000 Sobic009G188000 Sobic009G188000 Sobic003G160700--Sobic009G188000 Sobic003G436700 Sobic003G436700 Sobic003G160700--Sobic003G436700 Sobic001G139100 Sobic001G139100 Sobic006G249300--Sobic001G139100 Sobic001G169500 Sobic001G169500 Sobic006G249300--Sobic001G169500 Sobic004G100700 Sobic004G100700 Sobic006G249300--Sobic004G100700 Sobic008G186100 Sobic008G186100 Sobic006G249300--Sobic008G186100 Sobic005G011300 Sobic005G011300 Sobic006G249300--Sobic005G011300 Sobic003G086600 Sobic003G086600 Sobic006G249300--Sobic003G086600 Sobic010G259600 Sobic010G259600 Sobic006G249300--Sobic010G259600 Sobic006G249300--Sobic003G084400 Sobic009G183400 Sobic009G183400 Sobic006G249300--Sobic009G183400 Sobic009G248100--Sobic003G027400 Sobic003G321200 Sobic003G321200 Sobic009G248100--Sobic003G321200 Sobic001G325400 Sobic001G325400 Sobic009G248100--Sobic001G325400 Sobic009G035200 Sobic009G035200 Sobic009G248100--Sobic009G035200 Sobic009G229000 Sobic009G229000 Sobic009G248100--Sobic009G229000 Sobic003G117600 Sobic003G117600 Sobic009G248100--Sobic003G117600 Sobic006G092500 Sobic006G092500 Sobic009G248100--Sobic006G092500 Sobic009G111000 Sobic009G111000 Sobic009G248100--Sobic009G111000 Sobic006G039100 Sobic006G039100 Sobic009G248100--Sobic006G039100 Sobic006G191800 Sobic006G191800 Sobic010G221300--Sobic006G191800 Sobic010G221300--Sobic004G041900 Sobic001G031700 Sobic001G031700 Sobic010G221300--Sobic001G031700 Sobic010G047100 Sobic010G047100 Sobic010G221300--Sobic010G047100 Sobic010G221300--Sobic003G160700 Sobic010G221300--Sobic003G125650 Sobic004G203700 Sobic004G203700 Sobic010G221300--Sobic004G203700 Sobic009G184000 Sobic009G184000 Sobic010G221300--Sobic009G184000 Sobic010G221300--Sobic002G387900 Sobic001G304100 Sobic001G304100 Sobic001G481000--Sobic001G304100 Sobic001G310300 Sobic001G310300 Sobic001G481000--Sobic001G310300 Sobic010G184800 Sobic010G184800 Sobic001G481000--Sobic010G184800 Sobic001G481000--Sobic004G203700 Sobic001G481000--Sobic009G188000 Sobic001G481000--Sobic003G027400 Sobic001G481000--Sobic003G321200 Sobic002G213600 Sobic002G213600 Sobic001G481000--Sobic002G213600 Sobic001G481000--Sobic003G160700 Sobic005G113300--Sobic004G220000 Sobic001G295200 Sobic001G295200 Sobic005G113300--Sobic001G295200 Sobic001G361600 Sobic001G361600 Sobic005G113300--Sobic001G361600 Sobic006G116700 Sobic006G116700 Sobic005G113300--Sobic006G116700 Sobic001G018900 Sobic001G018900 Sobic005G113300--Sobic001G018900 Sobic007G197800 Sobic007G197800 Sobic005G113300--Sobic007G197800 Sobic009G076400 Sobic009G076400 Sobic005G113300--Sobic009G076400 Sobic002G379500 Sobic002G379500 Sobic005G113300--Sobic002G379500 Sobic005G113300--Sobic003G160700 Sobic002G387900--Sobic010G221300 Sobic002G387900--Sobic003G160700 Sobic002G387900--Sobic003G027400 Sobic002G387900--Sobic001G031700 Sobic002G387900--Sobic001G304100 Sobic002G387900--Sobic009G188000 Sobic002G251900 Sobic002G251900 Sobic002G387900--Sobic002G251900 Sobic002G387900--Sobic001G481000 Sobic001G313600 Sobic001G313600 Sobic002G387900--Sobic001G313600 Sobic003G084400--Sobic005G011300 Sobic001G500000 Sobic001G500000 Sobic003G084400--Sobic001G500000 Sobic002G188900 Sobic002G188900 Sobic003G084400--Sobic002G188900 Sobic004G046200 Sobic004G046200 Sobic003G084400--Sobic004G046200 Sobic003G084400--Sobic001G304100 Sobic001G367600 Sobic001G367600 Sobic003G084400--Sobic001G367600 Sobic005G107900 Sobic005G107900 Sobic003G084400--Sobic005G107900 Sobic003G084400--Sobic004G100700 Sobic003G084400--Sobic001G313600 Sobic007G184600 Sobic007G184600 Sobic002G200600--Sobic007G184600 Sobic001G402050 Sobic001G402050 Sobic002G200600--Sobic001G402050 Sobic006G067800 Sobic006G067800 Sobic002G200600--Sobic006G067800 Sobic002G200600--Sobic006G116700 Sobic002G081600 Sobic002G081600 Sobic002G200600--Sobic002G081600 Sobic002G200600--Sobic007G197800 Sobic001G374700 Sobic001G374700 Sobic002G200600--Sobic001G374700 Sobic002G200600--Sobic001G018900 Sobic001G130301 Sobic001G130301 Sobic002G200600--Sobic001G130301
Octagon: transcription factors


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