Gene annotation
Transcriptome id Sobic.003G321200.1
Synonym ATPMEPCRA, Sb03g036790, PMEPCRA
Functional annotation pectinesterase, putative, expressed
UniProt C5XMC1
Pfam PF04043 PF01095
Panther DB PTHR31707 PTHR31707:SF32
NCBI CDD -
KEGG Orthology K01051; pectinesterase
Gene Ontology GO:0004857; enzyme inhibitor activity GO:0005618cell wall


Orthologs (automatic annotation)
TAIR AT1G11580 : methylesterase PCR A
RAP-DB (Rice) LOC_Os01g57854.1 : pectinesterase, putative, expressed
MaizeGDB (Corn) Zm00025a019737 , Zm00025a024331 , Zm00025a049134 , Zm00025a030727
Brachypodium KQK03643 , KQK10126
Barley HORVU3Hr1G077630.5 , HORVU3Hr1G077630.1 , HORVU3Hr1G077630.2 , HORVU3Hr1G077630.3 , HORVU6Hr1G084030.4 , HORVU6Hr1G084030.1 , HORVU6Hr1G084030.3 , HORVU6Hr1G084030.2
Wheat TraesCS3D02G318800 , TraesCS3B02G354300 , TraesCS3A02G325500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G481000 expressed protein -
2 Sobic.001G435000 gibberellin receptor GID1L2, putative, expressed -
3 Sobic.003G417800 down-regulated TF in developmental senescence(PubMedID : 27586543)@histone-like transcription factor and archaeal histone, putative, expressed -
4 Sobic.006G092500 expressed protein -
5 Sobic.003G027400 VQ domain containing protein, putative, expressed -
6 Sobic.010G259600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein O-methyltransferase ZRP4 (Os)(PubMedID : 27208977)@transferase family protein, putative, expressed -
7 Sobic.004G166700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"Beta-fructofuranosidase, cell wall Invertase 2 (Os)"(PubMedID : 27208977)@glycosyl hydrolases, putative, expressed K01193: INV, beta-fructofuranosidase
8 Sobic.004G100700 ethylene-responsive transcription factor TINY, putative, expressed K09286: EREBP-like factor
9 Sobic.005G099000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed -
10 Sobic.009G159400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@universal stress protein domain containing protein, putative, expressed -
11 Sobic.003G352300 triosephosphate isomerase(PubMedID : 27016024)@triosephosphate isomerase, cytosolic, putative, expressed K01803: TPI, triosephosphate isomerase (TIM)
12 Sobic.009G234100 WRKY49, expressed -
13 Sobic.001G476500 helix-loop-helix DNA-binding protein, putative, expressed -
14 Sobic.003G345100 flavonol synthase/flavanone 3-hydroxylase, putative, expressed -
15 Sobic.005G063100 expressed protein -
16 Sobic.009G229000 expressed protein -
17 Sobic.009G248100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.004G208700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CHIT1 - Chitinase family protein precursor, expressed K01183: chitinase
19 Sobic.003G393700 zinc finger, RING-type, putative, expressed -
20 Sobic.001G169500 - -


Gene co-expression network
sample Sobic003G321200 Sobic003G321200 Sobic001G481000 Sobic001G481000 Sobic003G321200--Sobic001G481000 Sobic001G435000 Sobic001G435000 Sobic003G321200--Sobic001G435000 Sobic003G417800 Sobic003G417800 Sobic003G321200--Sobic003G417800 Sobic006G092500 Sobic006G092500 Sobic003G321200--Sobic006G092500 Sobic003G027400 Sobic003G027400 Sobic003G321200--Sobic003G027400 Sobic010G259600 Sobic010G259600 Sobic003G321200--Sobic010G259600 Sobic004G166700 Sobic004G166700 Sobic003G321200--Sobic004G166700 Sobic004G100700 Sobic004G100700 Sobic003G321200--Sobic004G100700 Sobic005G099000 Sobic005G099000 Sobic003G321200--Sobic005G099000 Sobic001G304100 Sobic001G304100 Sobic001G481000--Sobic001G304100 Sobic001G310300 Sobic001G310300 Sobic001G481000--Sobic001G310300 Sobic010G184800 Sobic010G184800 Sobic001G481000--Sobic010G184800 Sobic004G203700 Sobic004G203700 Sobic001G481000--Sobic004G203700 Sobic009G188000 Sobic009G188000 Sobic001G481000--Sobic009G188000 Sobic001G481000--Sobic003G027400 Sobic001G481000--Sobic003G321200 Sobic002G213600 Sobic002G213600 Sobic001G481000--Sobic002G213600 Sobic003G160700 Sobic003G160700 Sobic001G481000--Sobic003G160700 Sobic004G208700 Sobic004G208700 Sobic001G435000--Sobic004G208700 Sobic004G229800 Sobic004G229800 Sobic001G435000--Sobic004G229800 Sobic009G159400 Sobic009G159400 Sobic001G435000--Sobic009G159400 Sobic007G155000 Sobic007G155000 Sobic001G435000--Sobic007G155000 Sobic003G345100 Sobic003G345100 Sobic001G435000--Sobic003G345100 Sobic005G063100 Sobic005G063100 Sobic001G435000--Sobic005G063100 Sobic001G435000--Sobic005G099000 Sobic008G050600 Sobic008G050600 Sobic001G435000--Sobic008G050600 Sobic001G140900 Sobic001G140900 Sobic001G435000--Sobic001G140900 Sobic001G476500 Sobic001G476500 Sobic003G417800--Sobic001G476500 Sobic003G437200 Sobic003G437200 Sobic003G417800--Sobic003G437200 Sobic009G183400 Sobic009G183400 Sobic003G417800--Sobic009G183400 Sobic003G062600 Sobic003G062600 Sobic003G417800--Sobic003G062600 Sobic001G119400 Sobic001G119400 Sobic003G417800--Sobic001G119400 Sobic004G107700 Sobic004G107700 Sobic003G417800--Sobic004G107700 Sobic006G099900 Sobic006G099900 Sobic003G417800--Sobic006G099900 Sobic003G352300 Sobic003G352300 Sobic003G417800--Sobic003G352300 Sobic009G240600 Sobic009G240600 Sobic003G417800--Sobic009G240600 Sobic006G092500--Sobic001G476500 Sobic006G092500--Sobic009G183400 Sobic006G092500--Sobic004G100700 Sobic004G205100 Sobic004G205100 Sobic006G092500--Sobic004G205100 Sobic009G229000 Sobic009G229000 Sobic006G092500--Sobic009G229000 Sobic006G092500--Sobic005G063100 Sobic006G092500--Sobic003G352300 Sobic003G117600 Sobic003G117600 Sobic006G092500--Sobic003G117600 Sobic006G092500--Sobic010G259600 Sobic003G027400--Sobic003G160700 Sobic006G249300 Sobic006G249300 Sobic003G027400--Sobic006G249300 Sobic009G248100 Sobic009G248100 Sobic003G027400--Sobic009G248100 Sobic010G221300 Sobic010G221300 Sobic003G027400--Sobic010G221300 Sobic003G027400--Sobic001G481000 Sobic005G113300 Sobic005G113300 Sobic003G027400--Sobic005G113300 Sobic002G387900 Sobic002G387900 Sobic003G027400--Sobic002G387900 Sobic003G084400 Sobic003G084400 Sobic003G027400--Sobic003G084400 Sobic002G200600 Sobic002G200600 Sobic003G027400--Sobic002G200600 Sobic010G259600--Sobic009G159400 Sobic010G259600--Sobic003G352300 Sobic009G234100 Sobic009G234100 Sobic010G259600--Sobic009G234100 Sobic002G125700 Sobic002G125700 Sobic010G259600--Sobic002G125700 Sobic007G087200 Sobic007G087200 Sobic010G259600--Sobic007G087200 Sobic009G231000 Sobic009G231000 Sobic010G259600--Sobic009G231000 Sobic010G259600--Sobic001G435000 Sobic003G255200 Sobic003G255200 Sobic010G259600--Sobic003G255200 Sobic002G017800 Sobic002G017800 Sobic010G259600--Sobic002G017800 Sobic001G252300 Sobic001G252300 Sobic004G166700--Sobic001G252300 Sobic004G166700--Sobic009G229000 Sobic002G416600 Sobic002G416600 Sobic004G166700--Sobic002G416600 Sobic004G166700--Sobic009G234100 Sobic005G051200 Sobic005G051200 Sobic004G166700--Sobic005G051200 Sobic004G166700--Sobic004G208700 Sobic004G166700--Sobic006G092500 Sobic004G166700--Sobic003G345100 Sobic004G166700--Sobic005G063100 Sobic005G011300 Sobic005G011300 Sobic004G100700--Sobic005G011300 Sobic002G188900 Sobic002G188900 Sobic004G100700--Sobic002G188900 Sobic004G100700--Sobic001G140900 Sobic001G108200 Sobic001G108200 Sobic004G100700--Sobic001G108200 Sobic001G169500 Sobic001G169500 Sobic004G100700--Sobic001G169500 Sobic004G141200 Sobic004G141200 Sobic004G100700--Sobic004G141200 Sobic003G393900 Sobic003G393900 Sobic004G100700--Sobic003G393900 Sobic004G301000 Sobic004G301000 Sobic004G100700--Sobic004G301000 Sobic001G367600 Sobic001G367600 Sobic004G100700--Sobic001G367600 Sobic005G099000--Sobic005G063100 Sobic005G099000--Sobic003G345100 Sobic003G116800 Sobic003G116800 Sobic005G099000--Sobic003G116800 Sobic005G099000--Sobic004G141200 Sobic005G099000--Sobic001G169500 Sobic005G099000--Sobic001G435000 Sobic005G099000--Sobic004G208700 Sobic005G099000--Sobic005G011300 Sobic005G099000--Sobic001G108200
Octagon: transcription factors


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