Gene annotation
Transcriptome id Sobic.004G109900.1
Synonym Sb04g008990
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt A0A194YNX0
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF146
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT5G06490 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os02g15080.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G066200 expressed protein -
2 Sobic.001G112200 LTPL118 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
3 Sobic.010G225251 - -
4 Sobic.009G184000 ICE-like protease p20 domain containing protein, putative, expressed -
5 Sobic.010G156500 expressed protein -
6 Sobic.006G235100 expressed protein -
7 Sobic.001G502400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@RING-H2 finger protein ATL3F, putative, expressed -
8 Sobic.002G389400 OsRCI2-10 - Hydrophobic protein LTI6A, expressed -
9 Sobic.009G145700 peroxidase precursor, putative, expressed K00430: peroxidase
10 Sobic.008G158800 LTPL112 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
11 Sobic.006G157500 zinc finger, C3HC4 type domain containing protein, expressed K10666: E3 ubiquitin-protein ligase RNF5
12 Sobic.002G042000 gibberellin receptor GID1L2, putative, expressed -
13 Sobic.006G008000 O-methyltransferase, putative, expressed -
14 Sobic.001G280800 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
15 Sobic.009G069800 Hexokinase-7(PubMedID : 26186930)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Hexokinase 1 HXK1 (Os)(PubMedID : 27208977)@hexokinase, putative, expressed K00844: hexokinase
16 Sobic.008G066401 - -
17 Sobic.009G168900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed -
18 Sobic.009G200566 - -
19 Sobic.002G338500 sugar transporter 1(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed -
20 Sobic.002G012500 DUF538 domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic004G109900 Sobic004G109900 Sobic008G066200 Sobic008G066200 Sobic004G109900--Sobic008G066200 Sobic001G112200 Sobic001G112200 Sobic004G109900--Sobic001G112200 Sobic010G225251 Sobic010G225251 Sobic004G109900--Sobic010G225251 Sobic009G184000 Sobic009G184000 Sobic004G109900--Sobic009G184000 Sobic010G156500 Sobic010G156500 Sobic004G109900--Sobic010G156500 Sobic006G235100 Sobic006G235100 Sobic004G109900--Sobic006G235100 Sobic001G502400 Sobic001G502400 Sobic004G109900--Sobic001G502400 Sobic002G389400 Sobic002G389400 Sobic004G109900--Sobic002G389400 Sobic009G145700 Sobic009G145700 Sobic004G109900--Sobic009G145700 Sobic006G008000 Sobic006G008000 Sobic008G066200--Sobic006G008000 Sobic002G012500 Sobic002G012500 Sobic008G066200--Sobic002G012500 Sobic008G066200--Sobic009G145700 Sobic003G079200 Sobic003G079200 Sobic008G066200--Sobic003G079200 Sobic009G145600 Sobic009G145600 Sobic008G066200--Sobic009G145600 Sobic008G066401 Sobic008G066401 Sobic008G066200--Sobic008G066401 Sobic008G022000 Sobic008G022000 Sobic008G066200--Sobic008G022000 Sobic002G012300 Sobic002G012300 Sobic008G066200--Sobic002G012300 Sobic001G188800 Sobic001G188800 Sobic008G066200--Sobic001G188800 Sobic001G112200--Sobic009G184000 Sobic001G318700 Sobic001G318700 Sobic001G112200--Sobic001G318700 Sobic001G138600 Sobic001G138600 Sobic001G112200--Sobic001G138600 Sobic003G369100 Sobic003G369100 Sobic001G112200--Sobic003G369100 Sobic007G169700 Sobic007G169700 Sobic001G112200--Sobic007G169700 Sobic004G237800 Sobic004G237800 Sobic001G112200--Sobic004G237800 Sobic001G112200--Sobic009G145700 Sobic007G074000 Sobic007G074000 Sobic001G112200--Sobic007G074000 Sobic001G310600 Sobic001G310600 Sobic001G112200--Sobic001G310600 Sobic010G225251--Sobic001G112200 Sobic004G336500 Sobic004G336500 Sobic010G225251--Sobic004G336500 Sobic010G225251--Sobic001G310600 Sobic009G069800 Sobic009G069800 Sobic010G225251--Sobic009G069800 Sobic010G225251--Sobic001G138600 Sobic010G225251--Sobic009G184000 Sobic010G225251--Sobic002G389400 Sobic010G225251--Sobic004G109900 Sobic010G225251--Sobic007G169700 Sobic009G184000--Sobic001G112200 Sobic009G184000--Sobic007G169700 Sobic009G184000--Sobic006G235100 Sobic009G184000--Sobic001G502400 Sobic003G228900 Sobic003G228900 Sobic009G184000--Sobic003G228900 Sobic003G432700 Sobic003G432700 Sobic009G184000--Sobic003G432700 Sobic009G184000--Sobic001G138600 Sobic009G184000--Sobic008G066401 Sobic002G189100 Sobic002G189100 Sobic009G184000--Sobic002G189100 Sobic003G364300 Sobic003G364300 Sobic010G156500--Sobic003G364300 Sobic002G338500 Sobic002G338500 Sobic010G156500--Sobic002G338500 Sobic003G364000 Sobic003G364000 Sobic010G156500--Sobic003G364000 Sobic003G382600 Sobic003G382600 Sobic010G156500--Sobic003G382600 Sobic005G213500 Sobic005G213500 Sobic010G156500--Sobic005G213500 Sobic001G279500 Sobic001G279500 Sobic010G156500--Sobic001G279500 Sobic002G302500 Sobic002G302500 Sobic010G156500--Sobic002G302500 Sobic003G280200 Sobic003G280200 Sobic010G156500--Sobic003G280200 Sobic009G231000 Sobic009G231000 Sobic010G156500--Sobic009G231000 Sobic006G235100--Sobic001G502400 Sobic006G007900 Sobic006G007900 Sobic006G235100--Sobic006G007900 Sobic001G313600 Sobic001G313600 Sobic006G235100--Sobic001G313600 Sobic006G235100--Sobic009G184000 Sobic005G107900 Sobic005G107900 Sobic006G235100--Sobic005G107900 Sobic003G442100 Sobic003G442100 Sobic006G235100--Sobic003G442100 Sobic004G141100 Sobic004G141100 Sobic006G235100--Sobic004G141100 Sobic006G075400 Sobic006G075400 Sobic006G235100--Sobic006G075400 Sobic006G235100--Sobic003G432700 Sobic001G502400--Sobic005G107900 Sobic001G502400--Sobic001G313600 Sobic001G502400--Sobic006G235100 Sobic001G502400--Sobic003G432700 Sobic001G502400--Sobic009G184000 Sobic001G502400--Sobic006G075400 Sobic009G188000 Sobic009G188000 Sobic001G502400--Sobic009G188000 Sobic005G011300 Sobic005G011300 Sobic001G502400--Sobic005G011300 Sobic001G502400--Sobic006G007900 Sobic002G389400--Sobic001G112200 Sobic002G389400--Sobic009G184000 Sobic004G171400 Sobic004G171400 Sobic002G389400--Sobic004G171400 Sobic003G367200 Sobic003G367200 Sobic002G389400--Sobic003G367200 Sobic004G321300 Sobic004G321300 Sobic002G389400--Sobic004G321300 Sobic002G389400--Sobic010G225251 Sobic002G389400--Sobic004G336500 Sobic010G166500 Sobic010G166500 Sobic002G389400--Sobic010G166500 Sobic002G389400--Sobic001G138600 Sobic009G145700--Sobic009G145600 Sobic009G145700--Sobic008G066401 Sobic009G145700--Sobic008G066200 Sobic009G145700--Sobic006G008000 Sobic009G145700--Sobic001G112200 Sobic003G043600 Sobic003G043600 Sobic009G145700--Sobic003G043600 Sobic003G043500 Sobic003G043500 Sobic009G145700--Sobic003G043500 Sobic009G145700--Sobic009G184000 Sobic009G145700--Sobic003G079200
Octagon: transcription factors


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