Gene annotation
Transcriptome id Sobic.001G422900.1
Synonym RHC2A, Sb01g039760
Functional annotation zinc finger family protein, putative, expressed
UniProt C5WQ14
Pfam PF14369 PF13639 PF06547
Panther DB PTHR22763 PTHR22763:SF33
NCBI CDD KOG1493; Anaphase-promoting complex (APC), subunit 11
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT2G39720 : RING-H2 finger C2A
RAP-DB (Rice) LOC_Os03g16480.1 : zinc finger family protein, putative, expressed
MaizeGDB (Corn) Zm00025a001805 , Zm00025a052770
Brachypodium KQK22357
Barley HORVU4Hr1G060130.1 , HORVU4Hr1G060130.2
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G245800 AN1-like zinc finger domain containing protein, expressed -
2 Sobic.010G204600 SNF7 domain containing protein, putative, expressed K12197: CHMP1, VPS46, charged multivesicular body protein 1
3 Sobic.001G037000 PHD finger protein, putative, expressed -
4 Sobic.001G095300 prenylated rab acceptor, putative, expressed -
5 Sobic.003G181500 ZOS1-09 - C2H2 zinc finger protein, expressed -
6 Sobic.003G249800 60S ribosomal protein L18a-1, putative, expressed -
7 Sobic.005G229700 GRAS family transcription factor domain containing protein, expressed -
8 Sobic.002G211900 zinc finger, C3HC4 type domain containing protein, expressed K16274: E3 ubiquitin-protein ligase AIP2
9 Sobic.002G405600 early response to dehydration 15, putative, expressed -
10 Sobic.009G129000 E3 ubiquitin-protein ligase MGRN1, putative, expressed -
11 Sobic.010G223600 ubiquitin family protein, putative, expressed K08770: ubiquitin C
12 Sobic.001G431500 gibberellin receptor GID1L2, putative, expressed -
13 Sobic.006G263600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.009G247900 similar to Putative late embryogenesis abundant protein(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@late embryogenesis abundant protein, putative, expressed -
15 Sobic.008G161000 protein kinase domain containing protein, expressed -
16 Sobic.003G364600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl hydrolases family 17, putative, expressed -
17 Sobic.003G417350 - -
18 Sobic.003G265200 B3 DNA binding domain containing protein, expressed K09287: RAV-like factor
19 Sobic.010G086200 GRAM domain containing protein, expressed -
20 Sobic.002G330000 core histone H2A/H2B/H3/H4, putative, expressed K11251: histone H2A


Gene co-expression network
sample Sobic001G422900 Sobic001G422900 Sobic002G245800 Sobic002G245800 Sobic001G422900--Sobic002G245800 Sobic010G204600 Sobic010G204600 Sobic001G422900--Sobic010G204600 Sobic001G037000 Sobic001G037000 Sobic001G422900--Sobic001G037000 Sobic001G095300 Sobic001G095300 Sobic001G422900--Sobic001G095300 Sobic003G181500 Sobic003G181500 Sobic001G422900--Sobic003G181500 Sobic003G249800 Sobic003G249800 Sobic001G422900--Sobic003G249800 Sobic005G229700 Sobic005G229700 Sobic001G422900--Sobic005G229700 Sobic002G211900 Sobic002G211900 Sobic001G422900--Sobic002G211900 Sobic002G405600 Sobic002G405600 Sobic001G422900--Sobic002G405600 Sobic002G245800--Sobic002G405600 Sobic001G040200 Sobic001G040200 Sobic002G245800--Sobic001G040200 Sobic003G324400 Sobic003G324400 Sobic002G245800--Sobic003G324400 Sobic009G247900 Sobic009G247900 Sobic002G245800--Sobic009G247900 Sobic002G245800--Sobic001G422900 Sobic009G023200 Sobic009G023200 Sobic002G245800--Sobic009G023200 Sobic002G245800--Sobic001G095300 Sobic002G140300 Sobic002G140300 Sobic002G245800--Sobic002G140300 Sobic006G179500 Sobic006G179500 Sobic002G245800--Sobic006G179500 Sobic010G204600--Sobic001G095300 Sobic003G063200 Sobic003G063200 Sobic010G204600--Sobic003G063200 Sobic010G204600--Sobic002G405600 Sobic004G157000 Sobic004G157000 Sobic010G204600--Sobic004G157000 Sobic010G204600--Sobic009G023200 Sobic009G129000 Sobic009G129000 Sobic010G204600--Sobic009G129000 Sobic001G055600 Sobic001G055600 Sobic010G204600--Sobic001G055600 Sobic003G202200 Sobic003G202200 Sobic010G204600--Sobic003G202200 Sobic009G033700 Sobic009G033700 Sobic010G204600--Sobic009G033700 Sobic001G037000--Sobic003G249800 Sobic001G037000--Sobic003G063200 Sobic001G037000--Sobic001G422900 Sobic001G037000--Sobic010G204600 Sobic001G067601 Sobic001G067601 Sobic001G037000--Sobic001G067601 Sobic009G016201 Sobic009G016201 Sobic001G037000--Sobic009G016201 Sobic003G265200 Sobic003G265200 Sobic001G037000--Sobic003G265200 Sobic002G205300 Sobic002G205300 Sobic001G037000--Sobic002G205300 Sobic001G037000--Sobic003G181500 Sobic001G095300--Sobic010G204600 Sobic001G095300--Sobic002G140300 Sobic003G092900 Sobic003G092900 Sobic001G095300--Sobic003G092900 Sobic001G095300--Sobic003G324400 Sobic001G095300--Sobic002G405600 Sobic001G538866 Sobic001G538866 Sobic001G095300--Sobic001G538866 Sobic001G095300--Sobic002G245800 Sobic001G095300--Sobic009G129000 Sobic001G095300--Sobic006G179500 Sobic004G187900 Sobic004G187900 Sobic003G181500--Sobic004G187900 Sobic003G350300 Sobic003G350300 Sobic003G181500--Sobic003G350300 Sobic010G149300 Sobic010G149300 Sobic003G181500--Sobic010G149300 Sobic003G181500--Sobic003G249800 Sobic001G288800 Sobic001G288800 Sobic003G181500--Sobic001G288800 Sobic001G281400 Sobic001G281400 Sobic003G181500--Sobic001G281400 Sobic003G181500--Sobic009G023200 Sobic003G181500--Sobic002G211900 Sobic002G046100 Sobic002G046100 Sobic003G181500--Sobic002G046100 Sobic008G161000 Sobic008G161000 Sobic003G249800--Sobic008G161000 Sobic003G249800--Sobic001G037000 Sobic003G249800--Sobic009G033700 Sobic003G249800--Sobic002G046100 Sobic002G282400 Sobic002G282400 Sobic003G249800--Sobic002G282400 Sobic002G330000 Sobic002G330000 Sobic003G249800--Sobic002G330000 Sobic009G143400 Sobic009G143400 Sobic003G249800--Sobic009G143400 Sobic003G249800--Sobic002G211900 Sobic003G249800--Sobic003G181500 Sobic005G229700--Sobic003G265200 Sobic005G229700--Sobic001G422900 Sobic005G229700--Sobic002G245800 Sobic005G229700--Sobic001G037000 Sobic001G399100 Sobic001G399100 Sobic005G229700--Sobic001G399100 Sobic005G229700--Sobic003G181500 Sobic002G055600 Sobic002G055600 Sobic005G229700--Sobic002G055600 Sobic009G070400 Sobic009G070400 Sobic005G229700--Sobic009G070400 Sobic002G333400 Sobic002G333400 Sobic005G229700--Sobic002G333400 Sobic002G211900--Sobic003G249800 Sobic001G015100 Sobic001G015100 Sobic002G211900--Sobic001G015100 Sobic002G211900--Sobic003G181500 Sobic004G177700 Sobic004G177700 Sobic002G211900--Sobic004G177700 Sobic002G211900--Sobic002G046100 Sobic001G477300 Sobic001G477300 Sobic002G211900--Sobic001G477300 Sobic002G312400 Sobic002G312400 Sobic002G211900--Sobic002G312400 Sobic002G211900--Sobic001G095300 Sobic001G308300 Sobic001G308300 Sobic002G211900--Sobic001G308300 Sobic002G405600--Sobic002G245800 Sobic002G405600--Sobic003G324400 Sobic002G405600--Sobic003G202200 Sobic002G405600--Sobic010G204600 Sobic002G405600--Sobic009G247900 Sobic010G267600 Sobic010G267600 Sobic002G405600--Sobic010G267600 Sobic006G263600 Sobic006G263600 Sobic002G405600--Sobic006G263600 Sobic001G259700 Sobic001G259700 Sobic002G405600--Sobic001G259700 Sobic002G405600--Sobic001G095300
Octagon: transcription factors


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