Gene annotation
Transcriptome id Sobic.003G364600.1
Synonym Sb03g040630
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
glycosyl hydrolases family 17, putative, expressed
UniProt C5XQJ5
Pfam PF00332
Panther DB PTHR32227 PTHR32227:SF71
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds


Orthologs (automatic annotation)
TAIR AT2G27500 : Glycosyl hydrolase superfamily protein
RAP-DB (Rice) LOC_Os01g64170.1 : glycosyl hydrolases family 17, putative, expressed
MaizeGDB (Corn) Zm00025a037249 , Zm00025a050933 , Zm00025a026758 , Zm00025a039585
Brachypodium PNT71166 , KQK10714 , KQJ99728 , KQK19723 , KQK18106
Barley HORVU1Hr1G073820.3 , HORVU1Hr1G073820.2 , HORVU1Hr1G073820.7 , HORVU1Hr1G073820.6 , HORVU1Hr1G073820.5 , HORVU1Hr1G073820.4 , HORVU1Hr1G073820.8 , HORVU7Hr1G079650.1 , HORVU7Hr1G079650.2 , HORVU7Hr1G079650.3 , HORVU7Hr1G079650.4 , HORVU7Hr1G079650.6 , HORVU7Hr1G079650.7 , HORVU7Hr1G079650.8 , HORVU7Hr1G079650.9 , HORVU7Hr1G012550.4 , HORVU7Hr1G012550.1 , HORVU7Hr1G012550.2 , HORVU7Hr1G012550.3 , HORVU7Hr1G079650.12 , HORVU7Hr1G079650.13 , HORVU7Hr1G079650.11 , HORVU7Hr1G079650.14 , HORVU7Hr1G079650.10 , HORVU3Hr1G084170.1 , HORVU3Hr1G084170.3 , HORVU3Hr1G084170.2 , HORVU3Hr1G084170.5 , HORVU3Hr1G084170.4
Wheat TraesCS7D02G329400 , TraesCS1B02G285400 , TraesCS1B02G285400 , TraesCS7A02G349200 , TraesCS1A02G276200 , TraesCS7B02G233500 , TraesCS3D02G366700 , TraesCS3D02G366700 , TraesCS3A02G374000 , TraesCS1D02G275700 , TraesCS3B02G406200 , TraesCSU02G153100 , TraesCS3A02G374000 , TraesCS3B02G406200
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G364600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G074000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@- -
2 Sobic.004G141200 cytochrome P450, putative, expressed K00487: trans-cinnamate 4-monooxygenase
3 Sobic.007G036900 triacylglycerol lipase like protein, putative, expressed -
4 Sobic.003G369100 AP2 domain containing protein, expressed -
5 Sobic.001G308300 expressed protein -
6 Sobic.002G140400 plastocyanin-like domain containing protein, putative, expressed -
7 Sobic.006G158600 short-chain dehydrogenase/reductase, putative, expressed K15095: (+)-neomenthol dehydrogenase
8 Sobic.001G391500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
9 Sobic.003G339500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@spotted leaf 11, putative, expressed -
10 Sobic.002G336600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@nucleoside transporter, putative, expressed K15014: SLC29A1_2_3, solute carrier family 29 (equilibrative nucleoside transporter), member 1/2/3
11 Sobic.004G301000 B-box (BBX) protein(PubMedID : 30626335)@B-box zinc finger family protein, putative, expressed -
12 Sobic.009G036000 similar to Hydrophobic protein LTI6B(PubMedID : 29862293)@OsRCI2-6 - Hydrophobic protein LTI6B, expressed -
13 Sobic.003G021500 sodium/calcium exchanger protein, putative, expressed -
14 Sobic.001G481100 DUF581 domain containing protein, expressed -
15 Sobic.001G108200 expressed protein -
16 Sobic.004G229800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cytokinin-O-glucosyltransferase 2, putative, expressed -
17 Sobic.001G138600 VQ domain containing protein, putative, expressed -
18 Sobic.001G038900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF567 domain containing protein, putative, expressed -
19 Sobic.009G247900 similar to Putative late embryogenesis abundant protein(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@late embryogenesis abundant protein, putative, expressed -
20 Sobic.003G334600 NAC domain transcription factor, putative, expressed -


Gene co-expression network
sample Sobic003G364600 Sobic003G364600 Sobic007G074000 Sobic007G074000 Sobic003G364600--Sobic007G074000 Sobic004G141200 Sobic004G141200 Sobic003G364600--Sobic004G141200 Sobic007G036900 Sobic007G036900 Sobic003G364600--Sobic007G036900 Sobic003G369100 Sobic003G369100 Sobic003G364600--Sobic003G369100 Sobic001G308300 Sobic001G308300 Sobic003G364600--Sobic001G308300 Sobic002G140400 Sobic002G140400 Sobic003G364600--Sobic002G140400 Sobic006G158600 Sobic006G158600 Sobic003G364600--Sobic006G158600 Sobic001G391500 Sobic001G391500 Sobic003G364600--Sobic001G391500 Sobic003G339500 Sobic003G339500 Sobic003G364600--Sobic003G339500 Sobic007G074000--Sobic003G369100 Sobic007G074000--Sobic004G141200 Sobic004G237800 Sobic004G237800 Sobic007G074000--Sobic004G237800 Sobic007G074000--Sobic002G140400 Sobic003G228900 Sobic003G228900 Sobic007G074000--Sobic003G228900 Sobic002G336600 Sobic002G336600 Sobic007G074000--Sobic002G336600 Sobic007G074000--Sobic003G364600 Sobic001G138600 Sobic001G138600 Sobic007G074000--Sobic001G138600 Sobic009G247900 Sobic009G247900 Sobic007G074000--Sobic009G247900 Sobic004G141200--Sobic003G369100 Sobic001G108200 Sobic001G108200 Sobic004G141200--Sobic001G108200 Sobic004G141200--Sobic007G074000 Sobic003G393900 Sobic003G393900 Sobic004G141200--Sobic003G393900 Sobic001G459800 Sobic001G459800 Sobic004G141200--Sobic001G459800 Sobic004G304625 Sobic004G304625 Sobic004G141200--Sobic004G304625 Sobic004G141200--Sobic001G138600 Sobic004G141200--Sobic001G391500 Sobic004G100700 Sobic004G100700 Sobic004G141200--Sobic004G100700 Sobic004G004500 Sobic004G004500 Sobic007G036900--Sobic004G004500 Sobic008G187001 Sobic008G187001 Sobic007G036900--Sobic008G187001 Sobic004G229800 Sobic004G229800 Sobic007G036900--Sobic004G229800 Sobic001G256700 Sobic001G256700 Sobic007G036900--Sobic001G256700 Sobic007G036900--Sobic004G141200 Sobic002G339000 Sobic002G339000 Sobic007G036900--Sobic002G339000 Sobic007G036900--Sobic003G364600 Sobic007G036900--Sobic001G108200 Sobic001G079300 Sobic001G079300 Sobic007G036900--Sobic001G079300 Sobic003G369100--Sobic004G141200 Sobic003G369100--Sobic007G074000 Sobic003G369100--Sobic001G138600 Sobic003G369100--Sobic001G108200 Sobic001G140900 Sobic001G140900 Sobic003G369100--Sobic001G140900 Sobic001G112200 Sobic001G112200 Sobic003G369100--Sobic001G112200 Sobic003G345100 Sobic003G345100 Sobic003G369100--Sobic003G345100 Sobic008G050600 Sobic008G050600 Sobic003G369100--Sobic008G050600 Sobic003G369100--Sobic001G308300 Sobic001G308300--Sobic002G140400 Sobic001G308300--Sobic003G369100 Sobic001G308300--Sobic004G141200 Sobic001G308300--Sobic001G108200 Sobic001G308300--Sobic007G074000 Sobic001G387900 Sobic001G387900 Sobic001G308300--Sobic001G387900 Sobic001G038900 Sobic001G038900 Sobic001G308300--Sobic001G038900 Sobic001G308300--Sobic003G364600 Sobic001G308300--Sobic006G158600 Sobic002G140400--Sobic001G038900 Sobic002G263400 Sobic002G263400 Sobic002G140400--Sobic002G263400 Sobic004G189400 Sobic004G189400 Sobic002G140400--Sobic004G189400 Sobic001G423800 Sobic001G423800 Sobic002G140400--Sobic001G423800 Sobic008G136400 Sobic008G136400 Sobic002G140400--Sobic008G136400 Sobic002G140400--Sobic007G074000 Sobic002G140400--Sobic004G237800 Sobic002G140400--Sobic008G050600 Sobic003G286600 Sobic003G286600 Sobic002G140400--Sobic003G286600 Sobic006G158600--Sobic008G136400 Sobic002G192000 Sobic002G192000 Sobic006G158600--Sobic002G192000 Sobic006G158600--Sobic002G140400 Sobic002G333400 Sobic002G333400 Sobic006G158600--Sobic002G333400 Sobic006G056400 Sobic006G056400 Sobic006G158600--Sobic006G056400 Sobic006G158600--Sobic001G038900 Sobic006G158600--Sobic001G423800 Sobic006G158600--Sobic002G336600 Sobic004G243100 Sobic004G243100 Sobic006G158600--Sobic004G243100 Sobic001G391500--Sobic001G459800 Sobic001G391500--Sobic004G141200 Sobic003G144700 Sobic003G144700 Sobic001G391500--Sobic003G144700 Sobic007G213800 Sobic007G213800 Sobic001G391500--Sobic007G213800 Sobic001G320900 Sobic001G320900 Sobic001G391500--Sobic001G320900 Sobic003G148600 Sobic003G148600 Sobic001G391500--Sobic003G148600 Sobic001G391500--Sobic003G369100 Sobic001G391500--Sobic001G138600 Sobic001G391500--Sobic007G074000 Sobic003G339500--Sobic003G364600 Sobic003G339500--Sobic001G391500 Sobic003G339500--Sobic001G138600 Sobic003G339500--Sobic007G074000 Sobic003G382800 Sobic003G382800 Sobic003G339500--Sobic003G382800 Sobic003G339500--Sobic004G141200 Sobic003G260300 Sobic003G260300 Sobic003G339500--Sobic003G260300 Sobic003G339500--Sobic003G369100 Sobic003G339500--Sobic007G036900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.