Gene annotation
Transcriptome id Sobic.003G339500.1
Synonym Sb03g038360
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
spotted leaf 11, putative, expressed
UniProt A0A1B6Q6T7
Pfam PF00514 PF04564
Panther DB PTHR23315 PTHR23315:SF63
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0016567protein ubiquitination GO:0004842ubiquitin-protein transferase activity


Orthologs (automatic annotation)
TAIR AT5G01830 : ARM repeat superfamily protein
RAP-DB (Rice) LOC_Os01g60860.1 : spotted leaf 11, putative, expressed
MaizeGDB (Corn) Zm00025a043984 , Zm00025a039761 , Zm00025a048581 , Zm00025a027039
Brachypodium KQK10372 , KQK05759
Barley HORVU1Hr1G069990.1 , HORVU1Hr1G069990.2 , HORVU3Hr1G081300.1 , HORVU3Hr1G081300.2
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G364600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl hydrolases family 17, putative, expressed -
2 Sobic.001G391500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
3 Sobic.001G138600 VQ domain containing protein, putative, expressed -
4 Sobic.007G074000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@- -
5 Sobic.003G382800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
6 Sobic.004G141200 cytochrome P450, putative, expressed K00487: trans-cinnamate 4-monooxygenase
7 Sobic.003G260300 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
8 Sobic.003G369100 AP2 domain containing protein, expressed -
9 Sobic.007G036900 triacylglycerol lipase like protein, putative, expressed -
10 Sobic.007G155000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed K01674: carbonic anhydrase
11 Sobic.003G228900 cytochrome P450 72A1, putative, expressed -
12 Sobic.005G011300 peroxidase precursor, putative, expressed K00430: peroxidase
13 Sobic.001G481100 DUF581 domain containing protein, expressed -
14 Sobic.002G333400 KI domain interacting kinase 1, putative, expressed -
15 Sobic.004G100700 ethylene-responsive transcription factor TINY, putative, expressed K09286: EREBP-like factor
16 Sobic.004G301000 B-box (BBX) protein(PubMedID : 30626335)@B-box zinc finger family protein, putative, expressed -
17 Sobic.001G459800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucose 6-dehydrogenase, putative, expressed K00012: UGDH, UDPglucose 6-dehydrogenase
18 Sobic.006G263600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.001G108200 expressed protein -
20 Sobic.001G367600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic003G339500 Sobic003G339500 Sobic003G364600 Sobic003G364600 Sobic003G339500--Sobic003G364600 Sobic001G391500 Sobic001G391500 Sobic003G339500--Sobic001G391500 Sobic001G138600 Sobic001G138600 Sobic003G339500--Sobic001G138600 Sobic007G074000 Sobic007G074000 Sobic003G339500--Sobic007G074000 Sobic003G382800 Sobic003G382800 Sobic003G339500--Sobic003G382800 Sobic004G141200 Sobic004G141200 Sobic003G339500--Sobic004G141200 Sobic003G260300 Sobic003G260300 Sobic003G339500--Sobic003G260300 Sobic003G369100 Sobic003G369100 Sobic003G339500--Sobic003G369100 Sobic007G036900 Sobic007G036900 Sobic003G339500--Sobic007G036900 Sobic003G364600--Sobic007G074000 Sobic003G364600--Sobic004G141200 Sobic003G364600--Sobic007G036900 Sobic003G364600--Sobic003G369100 Sobic001G308300 Sobic001G308300 Sobic003G364600--Sobic001G308300 Sobic002G140400 Sobic002G140400 Sobic003G364600--Sobic002G140400 Sobic006G158600 Sobic006G158600 Sobic003G364600--Sobic006G158600 Sobic003G364600--Sobic001G391500 Sobic003G364600--Sobic003G339500 Sobic001G459800 Sobic001G459800 Sobic001G391500--Sobic001G459800 Sobic001G391500--Sobic004G141200 Sobic003G144700 Sobic003G144700 Sobic001G391500--Sobic003G144700 Sobic007G213800 Sobic007G213800 Sobic001G391500--Sobic007G213800 Sobic001G320900 Sobic001G320900 Sobic001G391500--Sobic001G320900 Sobic003G148600 Sobic003G148600 Sobic001G391500--Sobic003G148600 Sobic001G391500--Sobic003G369100 Sobic001G391500--Sobic001G138600 Sobic001G391500--Sobic007G074000 Sobic001G138600--Sobic003G382800 Sobic001G112200 Sobic001G112200 Sobic001G138600--Sobic001G112200 Sobic001G138600--Sobic004G141200 Sobic001G138600--Sobic003G369100 Sobic009G184000 Sobic009G184000 Sobic001G138600--Sobic009G184000 Sobic001G079300 Sobic001G079300 Sobic001G138600--Sobic001G079300 Sobic001G138600--Sobic007G074000 Sobic001G138600--Sobic001G459800 Sobic001G138600--Sobic001G391500 Sobic007G074000--Sobic003G369100 Sobic007G074000--Sobic004G141200 Sobic004G237800 Sobic004G237800 Sobic007G074000--Sobic004G237800 Sobic007G074000--Sobic002G140400 Sobic003G228900 Sobic003G228900 Sobic007G074000--Sobic003G228900 Sobic002G336600 Sobic002G336600 Sobic007G074000--Sobic002G336600 Sobic007G074000--Sobic003G364600 Sobic007G074000--Sobic001G138600 Sobic009G247900 Sobic009G247900 Sobic007G074000--Sobic009G247900 Sobic003G382800--Sobic001G138600 Sobic003G382800--Sobic004G141200 Sobic001G169500 Sobic001G169500 Sobic003G382800--Sobic001G169500 Sobic001G108200 Sobic001G108200 Sobic003G382800--Sobic001G108200 Sobic003G394400 Sobic003G394400 Sobic003G382800--Sobic003G394400 Sobic004G166200 Sobic004G166200 Sobic003G382800--Sobic004G166200 Sobic002G068600 Sobic002G068600 Sobic003G382800--Sobic002G068600 Sobic003G086600 Sobic003G086600 Sobic003G382800--Sobic003G086600 Sobic003G382800--Sobic003G148600 Sobic004G141200--Sobic003G369100 Sobic004G141200--Sobic001G108200 Sobic004G141200--Sobic007G074000 Sobic003G393900 Sobic003G393900 Sobic004G141200--Sobic003G393900 Sobic004G141200--Sobic001G459800 Sobic004G304625 Sobic004G304625 Sobic004G141200--Sobic004G304625 Sobic004G141200--Sobic001G138600 Sobic004G141200--Sobic001G391500 Sobic004G100700 Sobic004G100700 Sobic004G141200--Sobic004G100700 Sobic003G260300--Sobic003G228900 Sobic003G260300--Sobic001G079300 Sobic004G191400 Sobic004G191400 Sobic003G260300--Sobic004G191400 Sobic006G075400 Sobic006G075400 Sobic003G260300--Sobic006G075400 Sobic003G432700 Sobic003G432700 Sobic003G260300--Sobic003G432700 Sobic001G502400 Sobic001G502400 Sobic003G260300--Sobic001G502400 Sobic003G260300--Sobic009G184000 Sobic004G191300 Sobic004G191300 Sobic003G260300--Sobic004G191300 Sobic001G195200 Sobic001G195200 Sobic003G260300--Sobic001G195200 Sobic003G369100--Sobic004G141200 Sobic003G369100--Sobic007G074000 Sobic003G369100--Sobic001G138600 Sobic003G369100--Sobic001G108200 Sobic001G140900 Sobic001G140900 Sobic003G369100--Sobic001G140900 Sobic003G369100--Sobic001G112200 Sobic003G345100 Sobic003G345100 Sobic003G369100--Sobic003G345100 Sobic008G050600 Sobic008G050600 Sobic003G369100--Sobic008G050600 Sobic003G369100--Sobic001G308300 Sobic004G004500 Sobic004G004500 Sobic007G036900--Sobic004G004500 Sobic008G187001 Sobic008G187001 Sobic007G036900--Sobic008G187001 Sobic004G229800 Sobic004G229800 Sobic007G036900--Sobic004G229800 Sobic001G256700 Sobic001G256700 Sobic007G036900--Sobic001G256700 Sobic007G036900--Sobic004G141200 Sobic002G339000 Sobic002G339000 Sobic007G036900--Sobic002G339000 Sobic007G036900--Sobic003G364600 Sobic007G036900--Sobic001G108200 Sobic007G036900--Sobic001G079300
Octagon: transcription factors


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