Gene annotation
Transcriptome id Sobic.001G154400.1
Synonym Sb01g013420
Functional annotation expp1 protein precursor, putative, expressed
UniProt C5WR57
Pfam -
Panther DB PTHR21454 PTHR21454:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G44150 : -
RAP-DB (Rice) LOC_Os03g44560.1 : expp1 protein precursor, putative, expressed
MaizeGDB (Corn) Zm00025a017245 , Zm00025a007246
Brachypodium KQK13973
Barley HORVU5Hr1G092740.3 , HORVU5Hr1G092740.2 , HORVU5Hr1G092740.1
Wheat TraesCS5D02G382900 , TraesCS5A02G373400 , TraesCS5B02G375400
Populus -


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cDNA sequences
Sobic.001G154400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G113500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@RALFL4 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
2 Sobic.006G013900 RNA polymerase subunit, putative, expressed K03008: RPB11, DNA-directed RNA polymerase II subunit RPB11
3 Sobic.001G336050 - K18635: protein SPIRAL1 and related proteins
4 Sobic.004G102900 FUWA(Ortholog in rice:Chen 2015)(PubMedID : 31659879)@"encodes an NHL domain-containing protein regulating panicle architecture, grain shape and grain weight"(PubMedID : 26043067)@NHL repeat-containing protein, putative, expressed -
5 Sobic.004G318400 MTD1, putative, expressed -
6 Sobic.002G051200 PHF5-like protein domain containing protein, expressed K12834: PHD finger-like domain-containing protein 5A
7 Sobic.004G063500 protein transport protein SEC61 subunit gamma, putative, expressed K07342: SEC61G, SSS1, protein transport protein SEC61 subunit gamma and related proteins
8 Sobic.010G256200 expressed protein -
9 Sobic.003G325700 expressed protein -
10 Sobic.003G358300 josephin, putative, expressed K11863: ATXN3, Ataxin-3
11 Sobic.002G044000 WD domain, G-beta repeat domain containing protein, expressed K03246: translation initiation factor 3 subunit I
12 Sobic.009G120100 OsSigP5 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/His catalytic dyad, expressed K13280: SEC11, signal peptidase I
13 Sobic.001G399300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein phosphotase protein, putative, expressed -
14 Sobic.001G081100 OsSub31 - Putative Subtilisin homologue, expressed -
15 Sobic.004G032000 peptidase, T1 family, putative, expressed K02725: 20S proteasome subunit alpha 6
16 Sobic.006G231700 LSM domain containing protein, expressed K12626: U6 snRNA-associated Sm-like protein LSm7
17 Sobic.001G162800 expressed protein -
18 Sobic.006G066600 DNA-binding protein S1FA, putative, expressed -
19 Sobic.006G108600 prohibitin, putative, expressed K17080: prohibitin 1
20 Sobic.002G386300 exosome complex exonuclease, putative, expressed K12587: MTR3, exosome complex component MTR3


Gene co-expression network
sample Sobic001G154400 Sobic001G154400 Sobic002G113500 Sobic002G113500 Sobic001G154400--Sobic002G113500 Sobic006G013900 Sobic006G013900 Sobic001G154400--Sobic006G013900 Sobic001G336050 Sobic001G336050 Sobic001G154400--Sobic001G336050 Sobic004G102900 Sobic004G102900 Sobic001G154400--Sobic004G102900 Sobic004G318400 Sobic004G318400 Sobic001G154400--Sobic004G318400 Sobic002G051200 Sobic002G051200 Sobic001G154400--Sobic002G051200 Sobic004G063500 Sobic004G063500 Sobic001G154400--Sobic004G063500 Sobic010G256200 Sobic010G256200 Sobic001G154400--Sobic010G256200 Sobic003G325700 Sobic003G325700 Sobic001G154400--Sobic003G325700 Sobic002G113500--Sobic001G154400 Sobic002G113500--Sobic003G325700 Sobic002G113500--Sobic004G063500 Sobic002G239200 Sobic002G239200 Sobic002G113500--Sobic002G239200 Sobic001G399300 Sobic001G399300 Sobic002G113500--Sobic001G399300 Sobic003G146400 Sobic003G146400 Sobic002G113500--Sobic003G146400 Sobic010G030900 Sobic010G030900 Sobic002G113500--Sobic010G030900 Sobic002G113500--Sobic004G102900 Sobic009G216800 Sobic009G216800 Sobic002G113500--Sobic009G216800 Sobic006G231700 Sobic006G231700 Sobic006G013900--Sobic006G231700 Sobic006G013900--Sobic002G051200 Sobic001G162800 Sobic001G162800 Sobic006G013900--Sobic001G162800 Sobic004G137900 Sobic004G137900 Sobic006G013900--Sobic004G137900 Sobic006G013900--Sobic001G154400 Sobic004G343600 Sobic004G343600 Sobic006G013900--Sobic004G343600 Sobic002G331300 Sobic002G331300 Sobic006G013900--Sobic002G331300 Sobic005G206700 Sobic005G206700 Sobic006G013900--Sobic005G206700 Sobic002G386300 Sobic002G386300 Sobic006G013900--Sobic002G386300 Sobic001G336050--Sobic001G154400 Sobic001G517600 Sobic001G517600 Sobic001G336050--Sobic001G517600 Sobic006G108600 Sobic006G108600 Sobic001G336050--Sobic006G108600 Sobic004G032000 Sobic004G032000 Sobic001G336050--Sobic004G032000 Sobic003G289601 Sobic003G289601 Sobic001G336050--Sobic003G289601 Sobic002G304400 Sobic002G304400 Sobic001G336050--Sobic002G304400 Sobic007G134800 Sobic007G134800 Sobic001G336050--Sobic007G134800 Sobic003G072900 Sobic003G072900 Sobic001G336050--Sobic003G072900 Sobic003G300900 Sobic003G300900 Sobic001G336050--Sobic003G300900 Sobic004G102900--Sobic004G318400 Sobic007G208200 Sobic007G208200 Sobic004G102900--Sobic007G208200 Sobic001G050900 Sobic001G050900 Sobic004G102900--Sobic001G050900 Sobic004G102900--Sobic001G154400 Sobic006G066600 Sobic006G066600 Sobic004G102900--Sobic006G066600 Sobic002G240700 Sobic002G240700 Sobic004G102900--Sobic002G240700 Sobic003G304500 Sobic003G304500 Sobic004G102900--Sobic003G304500 Sobic007G194100 Sobic007G194100 Sobic004G102900--Sobic007G194100 Sobic004G102900--Sobic002G113500 Sobic004G318400--Sobic004G102900 Sobic004G318400--Sobic007G208200 Sobic004G318400--Sobic003G304500 Sobic004G274500 Sobic004G274500 Sobic004G318400--Sobic004G274500 Sobic004G318400--Sobic006G066600 Sobic004G196800 Sobic004G196800 Sobic004G318400--Sobic004G196800 Sobic009G025100 Sobic009G025100 Sobic004G318400--Sobic009G025100 Sobic004G155300 Sobic004G155300 Sobic004G318400--Sobic004G155300 Sobic004G318400--Sobic007G194100 Sobic002G051200--Sobic006G013900 Sobic002G051200--Sobic006G231700 Sobic002G051200--Sobic010G256200 Sobic002G051200--Sobic001G154400 Sobic001G349400 Sobic001G349400 Sobic002G051200--Sobic001G349400 Sobic003G358300 Sobic003G358300 Sobic002G051200--Sobic003G358300 Sobic003G434000 Sobic003G434000 Sobic002G051200--Sobic003G434000 Sobic002G051200--Sobic004G137900 Sobic009G052500 Sobic009G052500 Sobic002G051200--Sobic009G052500 Sobic009G120100 Sobic009G120100 Sobic004G063500--Sobic009G120100 Sobic004G063500--Sobic003G325700 Sobic003G063200 Sobic003G063200 Sobic004G063500--Sobic003G063200 Sobic001G066700 Sobic001G066700 Sobic004G063500--Sobic001G066700 Sobic010G266300 Sobic010G266300 Sobic004G063500--Sobic010G266300 Sobic004G063500--Sobic009G216800 Sobic003G403400 Sobic003G403400 Sobic004G063500--Sobic003G403400 Sobic004G063500--Sobic002G113500 Sobic004G063500--Sobic006G231700 Sobic001G157600 Sobic001G157600 Sobic010G256200--Sobic001G157600 Sobic001G123201 Sobic001G123201 Sobic010G256200--Sobic001G123201 Sobic004G242000 Sobic004G242000 Sobic010G256200--Sobic004G242000 Sobic010G256200--Sobic002G051200 Sobic010G256200--Sobic001G154400 Sobic009G060400 Sobic009G060400 Sobic010G256200--Sobic009G060400 Sobic009G030400 Sobic009G030400 Sobic010G256200--Sobic009G030400 Sobic010G256200--Sobic004G318400 Sobic004G272900 Sobic004G272900 Sobic010G256200--Sobic004G272900 Sobic003G325700--Sobic004G063500 Sobic003G325700--Sobic003G146400 Sobic010G196800 Sobic010G196800 Sobic003G325700--Sobic010G196800 Sobic003G325700--Sobic002G113500 Sobic003G325700--Sobic003G063200 Sobic006G158200 Sobic006G158200 Sobic003G325700--Sobic006G158200 Sobic008G111500 Sobic008G111500 Sobic003G325700--Sobic008G111500 Sobic004G247200 Sobic004G247200 Sobic003G325700--Sobic004G247200 Sobic009G131400 Sobic009G131400 Sobic003G325700--Sobic009G131400
Octagon: transcription factors


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