Gene annotation
Transcriptome id Sobic.004G102900.2
Synonym SbFUWA, Sb04g008420
Functional annotation FUWA(Ortholog in rice:Chen 2015) (PubMedID : 31659879)
"encodes an NHL domain-containing protein regulating panicle architecture, grain shape and grain weight" (PubMedID : 26043067)
NHL repeat-containing protein, putative, expressed
UniProt A0A1Z5RLR8
Pfam PF01436
Panther DB PTHR13833 PTHR13833:SF55
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G14860 : NHL domain-containing protein
RAP-DB (Rice) LOC_Os02g13950.1 : NHL repeat-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a020043
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.004G102900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G318400 MTD1, putative, expressed -
2 Sobic.007G208200 expressed protein -
3 Sobic.001G050900 oxidoreductase, putative, expressed K00472: prolyl 4-hydroxylase
4 Sobic.001G154400 expp1 protein precursor, putative, expressed -
5 Sobic.006G066600 DNA-binding protein S1FA, putative, expressed -
6 Sobic.002G240700 OsSub58 - Putative Subtilisin homologue, expressed -
7 Sobic.003G304500 expressed protein -
8 Sobic.007G194100 nucleotide pyrophosphatase/phosphodiesterase, putative, expressed -
9 Sobic.002G113500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@RALFL4 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
10 Sobic.005G064200 eukaryotic aspartyl protease domain containing protein, expressed -
11 Sobic.003G324300 zinc finger C3HC4 type family protein, putative, expressed K10695: E3 ubiquitin-protein ligase RNF1/2
12 Sobic.004G155300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.001G106400 serine esterase family protein, putative, expressed K10606: FANCL, E3 ubiquitin-protein ligase FANCL
14 Sobic.002G419500 HAD superfamily phosphatase, putative, expressed -
15 Sobic.009G170800 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
16 Sobic.004G063500 protein transport protein SEC61 subunit gamma, putative, expressed K07342: SEC61G, SSS1, protein transport protein SEC61 subunit gamma and related proteins
17 Sobic.007G140500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@CAF1 family ribonuclease containing protein, putative, expressed K12581: CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
18 Sobic.006G096300 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
19 Sobic.004G067900 expressed protein -
20 Sobic.003G295000 DUF584 domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic004G102900 Sobic004G102900 Sobic004G318400 Sobic004G318400 Sobic004G102900--Sobic004G318400 Sobic007G208200 Sobic007G208200 Sobic004G102900--Sobic007G208200 Sobic001G050900 Sobic001G050900 Sobic004G102900--Sobic001G050900 Sobic001G154400 Sobic001G154400 Sobic004G102900--Sobic001G154400 Sobic006G066600 Sobic006G066600 Sobic004G102900--Sobic006G066600 Sobic002G240700 Sobic002G240700 Sobic004G102900--Sobic002G240700 Sobic003G304500 Sobic003G304500 Sobic004G102900--Sobic003G304500 Sobic007G194100 Sobic007G194100 Sobic004G102900--Sobic007G194100 Sobic002G113500 Sobic002G113500 Sobic004G102900--Sobic002G113500 Sobic004G318400--Sobic004G102900 Sobic004G318400--Sobic007G208200 Sobic004G318400--Sobic003G304500 Sobic004G274500 Sobic004G274500 Sobic004G318400--Sobic004G274500 Sobic004G318400--Sobic006G066600 Sobic004G196800 Sobic004G196800 Sobic004G318400--Sobic004G196800 Sobic009G025100 Sobic009G025100 Sobic004G318400--Sobic009G025100 Sobic004G155300 Sobic004G155300 Sobic004G318400--Sobic004G155300 Sobic004G318400--Sobic007G194100 Sobic003G324300 Sobic003G324300 Sobic007G208200--Sobic003G324300 Sobic007G208200--Sobic004G318400 Sobic007G208200--Sobic004G102900 Sobic007G208200--Sobic007G194100 Sobic009G199300 Sobic009G199300 Sobic007G208200--Sobic009G199300 Sobic007G150700 Sobic007G150700 Sobic007G208200--Sobic007G150700 Sobic007G208200--Sobic003G304500 Sobic007G182500 Sobic007G182500 Sobic007G208200--Sobic007G182500 Sobic005G064200 Sobic005G064200 Sobic007G208200--Sobic005G064200 Sobic001G050900--Sobic004G102900 Sobic010G196800 Sobic010G196800 Sobic001G050900--Sobic010G196800 Sobic001G050900--Sobic005G064200 Sobic001G050900--Sobic007G208200 Sobic003G295000 Sobic003G295000 Sobic001G050900--Sobic003G295000 Sobic005G098700 Sobic005G098700 Sobic001G050900--Sobic005G098700 Sobic001G050900--Sobic009G199300 Sobic001G050900--Sobic007G194100 Sobic001G050900--Sobic004G318400 Sobic001G154400--Sobic002G113500 Sobic006G013900 Sobic006G013900 Sobic001G154400--Sobic006G013900 Sobic001G336050 Sobic001G336050 Sobic001G154400--Sobic001G336050 Sobic001G154400--Sobic004G102900 Sobic001G154400--Sobic004G318400 Sobic002G051200 Sobic002G051200 Sobic001G154400--Sobic002G051200 Sobic004G063500 Sobic004G063500 Sobic001G154400--Sobic004G063500 Sobic010G256200 Sobic010G256200 Sobic001G154400--Sobic010G256200 Sobic003G325700 Sobic003G325700 Sobic001G154400--Sobic003G325700 Sobic006G066600--Sobic004G318400 Sobic004G067900 Sobic004G067900 Sobic006G066600--Sobic004G067900 Sobic006G066600--Sobic004G102900 Sobic006G244500 Sobic006G244500 Sobic006G066600--Sobic006G244500 Sobic007G018000 Sobic007G018000 Sobic006G066600--Sobic007G018000 Sobic004G028800 Sobic004G028800 Sobic006G066600--Sobic004G028800 Sobic001G488200 Sobic001G488200 Sobic006G066600--Sobic001G488200 Sobic006G066600--Sobic004G155300 Sobic002G308400 Sobic002G308400 Sobic006G066600--Sobic002G308400 Sobic002G240700--Sobic007G194100 Sobic002G240700--Sobic009G199300 Sobic002G240700--Sobic004G067900 Sobic002G240700--Sobic005G098700 Sobic002G240700--Sobic004G102900 Sobic002G240700--Sobic007G208200 Sobic002G240700--Sobic002G308400 Sobic002G240700--Sobic003G304500 Sobic004G210000 Sobic004G210000 Sobic002G240700--Sobic004G210000 Sobic003G304500--Sobic009G025100 Sobic009G033500 Sobic009G033500 Sobic003G304500--Sobic009G033500 Sobic001G170500 Sobic001G170500 Sobic003G304500--Sobic001G170500 Sobic003G304500--Sobic004G274500 Sobic003G304500--Sobic004G196800 Sobic003G304500--Sobic004G155300 Sobic003G304500--Sobic004G318400 Sobic010G037200 Sobic010G037200 Sobic003G304500--Sobic010G037200 Sobic007G091200 Sobic007G091200 Sobic003G304500--Sobic007G091200 Sobic007G194100--Sobic002G240700 Sobic007G194100--Sobic010G037200 Sobic007G194100--Sobic009G199300 Sobic007G194100--Sobic002G308400 Sobic007G194100--Sobic005G098700 Sobic007G194100--Sobic009G025100 Sobic007G194100--Sobic004G067900 Sobic007G194100--Sobic007G208200 Sobic001G442200 Sobic001G442200 Sobic007G194100--Sobic001G442200 Sobic002G113500--Sobic001G154400 Sobic002G113500--Sobic003G325700 Sobic002G113500--Sobic004G063500 Sobic002G239200 Sobic002G239200 Sobic002G113500--Sobic002G239200 Sobic001G399300 Sobic001G399300 Sobic002G113500--Sobic001G399300 Sobic003G146400 Sobic003G146400 Sobic002G113500--Sobic003G146400 Sobic010G030900 Sobic010G030900 Sobic002G113500--Sobic010G030900 Sobic002G113500--Sobic004G102900 Sobic009G216800 Sobic009G216800 Sobic002G113500--Sobic009G216800
Octagon: transcription factors


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