Gene annotation
Transcriptome id Sobic.005G064200.1,Sobic.005G064200.2
Synonym Sb05g005400
Functional annotation eukaryotic aspartyl protease domain containing protein, expressed
UniProt C5Y681 , C5Y675
Pfam PF00026
Panther DB PTHR13683 PTHR13683:SF331
NCBI CDD KOG1339; Aspartyl protease
KEGG Orthology -
Gene Ontology GO:0006508; proteolysis GO:0004190aspartic-type endopeptidase activity


Orthologs (automatic annotation)
TAIR AT4G33490 : Eukaryotic aspartyl protease family protein
RAP-DB (Rice) LOC_Os11g08100.1 : eukaryotic aspartyl protease domain containing protein, expressed
MaizeGDB (Corn) Zm00025a012783
Brachypodium PNT64025 , KQJ92016 , KQJ89126 , KQJ92015
Barley HORVU4Hr1G017390.8 , HORVU4Hr1G017390.9 , HORVU4Hr1G017390.6 , HORVU4Hr1G017390.7 , HORVU4Hr1G017390.4 , HORVU4Hr1G017390.5 , HORVU4Hr1G017390.2 , HORVU4Hr1G017390.3 , HORVU4Hr1G017390.1 , HORVU5Hr1G037120.6 , HORVU5Hr1G037120.4 , HORVU5Hr1G037120.5 , HORVU5Hr1G037120.2 , HORVU5Hr1G037120.3 , HORVU5Hr1G037120.1 , HORVU5Hr1G037120.8 , HORVU5Hr1G037120.9 , HORVU4Hr1G017390.14 , HORVU4Hr1G017390.15 , HORVU4Hr1G017390.10 , HORVU4Hr1G017390.11 , HORVU4Hr1G017390.12 , HORVU4Hr1G017390.13 , HORVU5Hr1G037120.7 , HORVU5Hr1G037120.10 , HORVU5Hr1G037120.11 , HORVU5Hr1G037120.12
Wheat TraesCSU02G146200 , TraesCS4D02G094200 , TraesCS7B02G475600 , TraesCS4B02G098000 , TraesCS5A02G113400 , TraesCS5B02G119900 , TraesCS4A02G219500
Populus -


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cDNA sequences
Sobic.005G064200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G018000 expansin precursor, putative, expressed -
2 Sobic.003G324300 zinc finger C3HC4 type family protein, putative, expressed K10695: E3 ubiquitin-protein ligase RNF1/2
3 Sobic.004G318400 MTD1, putative, expressed -
4 Sobic.007G208200 expressed protein -
5 Sobic.005G098700 glycosyl hydrolase, putative, expressed K01183: chitinase
6 Sobic.001G050900 oxidoreductase, putative, expressed K00472: prolyl 4-hydroxylase
7 Sobic.009G199300 "domain confirmed by Pfam database, expression induced by IAA and BR treatments"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
8 Sobic.007G194100 nucleotide pyrophosphatase/phosphodiesterase, putative, expressed -
9 Sobic.010G196800 OsFBX436 - F-box domain containing protein, expressed -
10 Sobic.006G070830 - K01193: INV, beta-fructofuranosidase
11 Sobic.006G066600 DNA-binding protein S1FA, putative, expressed -
12 Sobic.004G274500 OsFBD8 - F-box and FBD domain containing protein, expressed -
13 Sobic.010G037200 SAM dependent carboxyl methyltransferase, putative, expressed -
14 Sobic.002G420800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@stress responsive protein, putative, expressed -
15 Sobic.004G102900 FUWA(Ortholog in rice:Chen 2015)(PubMedID : 31659879)@"encodes an NHL domain-containing protein regulating panicle architecture, grain shape and grain weight"(PubMedID : 26043067)@NHL repeat-containing protein, putative, expressed -
16 Sobic.002G308400 "MYB transcription factor(Ortholog in rice:Huang et al., 2012)"(PubMedID : 31659858)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
17 Sobic.004G067900 expressed protein -
18 Sobic.005G158801 - -
19 Sobic.002G161600 B3 DNA binding domain containing protein, expressed -
20 Sobic.007G076500 exonuclease, putative, expressed K18417: ERI1 exoribonuclease 2


Gene co-expression network
sample Sobic005G064200 Sobic005G064200 Sobic007G018000 Sobic007G018000 Sobic005G064200--Sobic007G018000 Sobic003G324300 Sobic003G324300 Sobic005G064200--Sobic003G324300 Sobic004G318400 Sobic004G318400 Sobic005G064200--Sobic004G318400 Sobic007G208200 Sobic007G208200 Sobic005G064200--Sobic007G208200 Sobic005G098700 Sobic005G098700 Sobic005G064200--Sobic005G098700 Sobic001G050900 Sobic001G050900 Sobic005G064200--Sobic001G050900 Sobic009G199300 Sobic009G199300 Sobic005G064200--Sobic009G199300 Sobic007G194100 Sobic007G194100 Sobic005G064200--Sobic007G194100 Sobic010G196800 Sobic010G196800 Sobic005G064200--Sobic010G196800 Sobic007G018000--Sobic005G064200 Sobic007G182500 Sobic007G182500 Sobic007G018000--Sobic007G182500 Sobic004G274500 Sobic004G274500 Sobic007G018000--Sobic004G274500 Sobic003G438300 Sobic003G438300 Sobic007G018000--Sobic003G438300 Sobic007G109400 Sobic007G109400 Sobic007G018000--Sobic007G109400 Sobic002G061200 Sobic002G061200 Sobic007G018000--Sobic002G061200 Sobic010G195600 Sobic010G195600 Sobic007G018000--Sobic010G195600 Sobic009G039500 Sobic009G039500 Sobic007G018000--Sobic009G039500 Sobic005G109800 Sobic005G109800 Sobic007G018000--Sobic005G109800 Sobic003G324300--Sobic007G208200 Sobic003G324300--Sobic005G064200 Sobic003G324300--Sobic004G318400 Sobic003G324300--Sobic009G199300 Sobic003G324300--Sobic007G182500 Sobic007G012400 Sobic007G012400 Sobic003G324300--Sobic007G012400 Sobic003G324300--Sobic007G018000 Sobic006G143300 Sobic006G143300 Sobic003G324300--Sobic006G143300 Sobic009G031600 Sobic009G031600 Sobic003G324300--Sobic009G031600 Sobic004G102900 Sobic004G102900 Sobic004G318400--Sobic004G102900 Sobic004G318400--Sobic007G208200 Sobic003G304500 Sobic003G304500 Sobic004G318400--Sobic003G304500 Sobic004G318400--Sobic004G274500 Sobic006G066600 Sobic006G066600 Sobic004G318400--Sobic006G066600 Sobic004G196800 Sobic004G196800 Sobic004G318400--Sobic004G196800 Sobic009G025100 Sobic009G025100 Sobic004G318400--Sobic009G025100 Sobic004G155300 Sobic004G155300 Sobic004G318400--Sobic004G155300 Sobic004G318400--Sobic007G194100 Sobic007G208200--Sobic003G324300 Sobic007G208200--Sobic004G318400 Sobic007G208200--Sobic004G102900 Sobic007G208200--Sobic007G194100 Sobic007G208200--Sobic009G199300 Sobic007G150700 Sobic007G150700 Sobic007G208200--Sobic007G150700 Sobic007G208200--Sobic003G304500 Sobic007G208200--Sobic007G182500 Sobic007G208200--Sobic005G064200 Sobic002G161600 Sobic002G161600 Sobic005G098700--Sobic002G161600 Sobic006G264800 Sobic006G264800 Sobic005G098700--Sobic006G264800 Sobic010G031400 Sobic010G031400 Sobic005G098700--Sobic010G031400 Sobic002G172100 Sobic002G172100 Sobic005G098700--Sobic002G172100 Sobic001G261700 Sobic001G261700 Sobic005G098700--Sobic001G261700 Sobic009G057100 Sobic009G057100 Sobic005G098700--Sobic009G057100 Sobic005G147500 Sobic005G147500 Sobic005G098700--Sobic005G147500 Sobic003G294800 Sobic003G294800 Sobic005G098700--Sobic003G294800 Sobic009G058300 Sobic009G058300 Sobic005G098700--Sobic009G058300 Sobic001G050900--Sobic004G102900 Sobic001G050900--Sobic010G196800 Sobic001G050900--Sobic005G064200 Sobic001G050900--Sobic007G208200 Sobic003G295000 Sobic003G295000 Sobic001G050900--Sobic003G295000 Sobic001G050900--Sobic005G098700 Sobic001G050900--Sobic009G199300 Sobic001G050900--Sobic007G194100 Sobic001G050900--Sobic004G318400 Sobic009G199300--Sobic007G194100 Sobic010G209300 Sobic010G209300 Sobic009G199300--Sobic010G209300 Sobic007G122932 Sobic007G122932 Sobic009G199300--Sobic007G122932 Sobic007G123000 Sobic007G123000 Sobic009G199300--Sobic007G123000 Sobic007G147300 Sobic007G147300 Sobic009G199300--Sobic007G147300 Sobic009G021300 Sobic009G021300 Sobic009G199300--Sobic009G021300 Sobic002G408700 Sobic002G408700 Sobic009G199300--Sobic002G408700 Sobic005G075000 Sobic005G075000 Sobic009G199300--Sobic005G075000 Sobic005G001500 Sobic005G001500 Sobic009G199300--Sobic005G001500 Sobic002G240700 Sobic002G240700 Sobic007G194100--Sobic002G240700 Sobic010G037200 Sobic010G037200 Sobic007G194100--Sobic010G037200 Sobic007G194100--Sobic009G199300 Sobic002G308400 Sobic002G308400 Sobic007G194100--Sobic002G308400 Sobic007G194100--Sobic005G098700 Sobic007G194100--Sobic009G025100 Sobic004G067900 Sobic004G067900 Sobic007G194100--Sobic004G067900 Sobic007G194100--Sobic007G208200 Sobic001G442200 Sobic001G442200 Sobic007G194100--Sobic001G442200 Sobic003G325700 Sobic003G325700 Sobic010G196800--Sobic003G325700 Sobic009G131400 Sobic009G131400 Sobic010G196800--Sobic009G131400 Sobic010G196800--Sobic001G050900 Sobic003G146400 Sobic003G146400 Sobic010G196800--Sobic003G146400 Sobic010G196800--Sobic005G064200 Sobic008G111500 Sobic008G111500 Sobic010G196800--Sobic008G111500 Sobic009G216800 Sobic009G216800 Sobic010G196800--Sobic009G216800 Sobic009G170800 Sobic009G170800 Sobic010G196800--Sobic009G170800 Sobic001G389900 Sobic001G389900 Sobic010G196800--Sobic001G389900
Octagon: transcription factors


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