Gene annotation
Transcriptome id Sobic.003G324300.1
Synonym RING1A, ATRING1A, Sb03g037070
Functional annotation zinc finger C3HC4 type family protein, putative, expressed
UniProt C5XME8
Pfam PF00097
Panther DB PTHR10825 PTHR10825:SF5
NCBI CDD KOG0311; Predicted E3 ubiquitin ligase
KEGG Orthology K10695; E3 ubiquitin-protein ligase RNF1/2
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G44280 : RING 1A
RAP-DB (Rice) LOC_Os01g58400.2 : zinc finger C3HC4 type family protein, putative, expressed
MaizeGDB (Corn) Zm00025a056715 , Zm00025a037866 , Zm00025a027213 , Zm00025a027214
Brachypodium -
Barley -
Wheat TraesCS3D02G321400 , TraesCS3D02G321400 , TraesCS3A02G327900 , TraesCS3A02G327900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G208200 expressed protein -
2 Sobic.005G064200 eukaryotic aspartyl protease domain containing protein, expressed -
3 Sobic.004G318400 MTD1, putative, expressed -
4 Sobic.009G199300 "domain confirmed by Pfam database, expression induced by IAA and BR treatments"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
5 Sobic.007G182500 bZIP family transcription factor, putative, expressed -
6 Sobic.007G012400 - -
7 Sobic.007G018000 expansin precursor, putative, expressed -
8 Sobic.006G143300 nuclear transport factor 2, putative, expressed -
9 Sobic.009G031600 expressed protein -
10 Sobic.004G102900 FUWA(Ortholog in rice:Chen 2015)(PubMedID : 31659879)@"encodes an NHL domain-containing protein regulating panicle architecture, grain shape and grain weight"(PubMedID : 26043067)@NHL repeat-containing protein, putative, expressed -
11 Sobic.004G274500 OsFBD8 - F-box and FBD domain containing protein, expressed -
12 Sobic.003G208800 aspartic proteinase, putative, expressed -
13 Sobic.001G050900 oxidoreductase, putative, expressed K00472: prolyl 4-hydroxylase
14 Sobic.001G067000 expressed protein K12606: RCD1, CNOT9, CCR4-NOT transcription complex subunit 9
15 Sobic.003G304500 expressed protein -
16 Sobic.007G076500 exonuclease, putative, expressed K18417: ERI1 exoribonuclease 2
17 Sobic.007G150700 Leucine Rich Repeat family protein, expressed K15082: DNA repair protein RAD7
18 Sobic.006G066600 DNA-binding protein S1FA, putative, expressed -
19 Sobic.010G010300 - -
20 Sobic.002G420800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@stress responsive protein, putative, expressed -


Gene co-expression network
sample Sobic003G324300 Sobic003G324300 Sobic007G208200 Sobic007G208200 Sobic003G324300--Sobic007G208200 Sobic005G064200 Sobic005G064200 Sobic003G324300--Sobic005G064200 Sobic004G318400 Sobic004G318400 Sobic003G324300--Sobic004G318400 Sobic009G199300 Sobic009G199300 Sobic003G324300--Sobic009G199300 Sobic007G182500 Sobic007G182500 Sobic003G324300--Sobic007G182500 Sobic007G012400 Sobic007G012400 Sobic003G324300--Sobic007G012400 Sobic007G018000 Sobic007G018000 Sobic003G324300--Sobic007G018000 Sobic006G143300 Sobic006G143300 Sobic003G324300--Sobic006G143300 Sobic009G031600 Sobic009G031600 Sobic003G324300--Sobic009G031600 Sobic007G208200--Sobic003G324300 Sobic007G208200--Sobic004G318400 Sobic004G102900 Sobic004G102900 Sobic007G208200--Sobic004G102900 Sobic007G194100 Sobic007G194100 Sobic007G208200--Sobic007G194100 Sobic007G208200--Sobic009G199300 Sobic007G150700 Sobic007G150700 Sobic007G208200--Sobic007G150700 Sobic003G304500 Sobic003G304500 Sobic007G208200--Sobic003G304500 Sobic007G208200--Sobic007G182500 Sobic007G208200--Sobic005G064200 Sobic005G064200--Sobic007G018000 Sobic005G064200--Sobic003G324300 Sobic005G064200--Sobic004G318400 Sobic005G064200--Sobic007G208200 Sobic005G098700 Sobic005G098700 Sobic005G064200--Sobic005G098700 Sobic001G050900 Sobic001G050900 Sobic005G064200--Sobic001G050900 Sobic005G064200--Sobic009G199300 Sobic005G064200--Sobic007G194100 Sobic010G196800 Sobic010G196800 Sobic005G064200--Sobic010G196800 Sobic004G318400--Sobic004G102900 Sobic004G318400--Sobic007G208200 Sobic004G318400--Sobic003G304500 Sobic004G274500 Sobic004G274500 Sobic004G318400--Sobic004G274500 Sobic006G066600 Sobic006G066600 Sobic004G318400--Sobic006G066600 Sobic004G196800 Sobic004G196800 Sobic004G318400--Sobic004G196800 Sobic009G025100 Sobic009G025100 Sobic004G318400--Sobic009G025100 Sobic004G155300 Sobic004G155300 Sobic004G318400--Sobic004G155300 Sobic004G318400--Sobic007G194100 Sobic009G199300--Sobic007G194100 Sobic010G209300 Sobic010G209300 Sobic009G199300--Sobic010G209300 Sobic007G122932 Sobic007G122932 Sobic009G199300--Sobic007G122932 Sobic007G123000 Sobic007G123000 Sobic009G199300--Sobic007G123000 Sobic007G147300 Sobic007G147300 Sobic009G199300--Sobic007G147300 Sobic009G021300 Sobic009G021300 Sobic009G199300--Sobic009G021300 Sobic002G408700 Sobic002G408700 Sobic009G199300--Sobic002G408700 Sobic005G075000 Sobic005G075000 Sobic009G199300--Sobic005G075000 Sobic005G001500 Sobic005G001500 Sobic009G199300--Sobic005G001500 Sobic001G170500 Sobic001G170500 Sobic007G182500--Sobic001G170500 Sobic007G182500--Sobic007G018000 Sobic007G182500--Sobic009G025100 Sobic007G182500--Sobic004G274500 Sobic004G250600 Sobic004G250600 Sobic007G182500--Sobic004G250600 Sobic007G182500--Sobic003G304500 Sobic007G182500--Sobic007G208200 Sobic004G254400 Sobic004G254400 Sobic007G182500--Sobic004G254400 Sobic001G368900 Sobic001G368900 Sobic007G182500--Sobic001G368900 Sobic007G012400--Sobic003G324300 Sobic007G012400--Sobic007G182500 Sobic007G012400--Sobic007G018000 Sobic004G075100 Sobic004G075100 Sobic007G012400--Sobic004G075100 Sobic007G012400--Sobic009G031600 Sobic002G374200 Sobic002G374200 Sobic007G012400--Sobic002G374200 Sobic007G012400--Sobic006G066600 Sobic010G237800 Sobic010G237800 Sobic007G012400--Sobic010G237800 Sobic007G012400--Sobic007G208200 Sobic007G018000--Sobic005G064200 Sobic007G018000--Sobic007G182500 Sobic007G018000--Sobic004G274500 Sobic003G438300 Sobic003G438300 Sobic007G018000--Sobic003G438300 Sobic007G109400 Sobic007G109400 Sobic007G018000--Sobic007G109400 Sobic002G061200 Sobic002G061200 Sobic007G018000--Sobic002G061200 Sobic010G195600 Sobic010G195600 Sobic007G018000--Sobic010G195600 Sobic009G039500 Sobic009G039500 Sobic007G018000--Sobic009G039500 Sobic005G109800 Sobic005G109800 Sobic007G018000--Sobic005G109800 Sobic005G033700 Sobic005G033700 Sobic006G143300--Sobic005G033700 Sobic006G200901 Sobic006G200901 Sobic006G143300--Sobic006G200901 Sobic002G343000 Sobic002G343000 Sobic006G143300--Sobic002G343000 Sobic004G014100 Sobic004G014100 Sobic006G143300--Sobic004G014100 Sobic001G081800 Sobic001G081800 Sobic006G143300--Sobic001G081800 Sobic002G349000 Sobic002G349000 Sobic006G143300--Sobic002G349000 Sobic002G230400 Sobic002G230400 Sobic006G143300--Sobic002G230400 Sobic005G164800 Sobic005G164800 Sobic006G143300--Sobic005G164800 Sobic006G186300 Sobic006G186300 Sobic006G143300--Sobic006G186300 Sobic009G031600--Sobic003G324300 Sobic002G420800 Sobic002G420800 Sobic009G031600--Sobic002G420800 Sobic001G067000 Sobic001G067000 Sobic009G031600--Sobic001G067000 Sobic009G031600--Sobic007G208200 Sobic009G031600--Sobic001G050900 Sobic003G358200 Sobic003G358200 Sobic009G031600--Sobic003G358200 Sobic001G437300 Sobic001G437300 Sobic009G031600--Sobic001G437300 Sobic007G128400 Sobic007G128400 Sobic009G031600--Sobic007G128400 Sobic009G031600--Sobic004G102900
Octagon: transcription factors


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