Gene annotation
Transcriptome id Sobic.006G066600.3
Synonym Sb06g015340
Functional annotation DNA-binding protein S1FA, putative, expressed
UniProt A0A1Z5RCL9
Pfam PF04689
Panther DB PTHR35298
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT2G37120 : S1FA-like DNA-binding protein
RAP-DB (Rice) LOC_Os04g33440.2 : DNA-binding protein S1FA, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQJ82473 , KQJ82472 , KQJ82474
Barley -
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.006G066600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G318400 MTD1, putative, expressed -
2 Sobic.004G067900 expressed protein -
3 Sobic.004G102900 FUWA(Ortholog in rice:Chen 2015)(PubMedID : 31659879)@"encodes an NHL domain-containing protein regulating panicle architecture, grain shape and grain weight"(PubMedID : 26043067)@NHL repeat-containing protein, putative, expressed -
4 Sobic.006G244500 nuclease PA3, putative, expressed -
5 Sobic.007G018000 expansin precursor, putative, expressed -
6 Sobic.004G028800 expressed protein K19042: E3 ubiquitin-protein ligase BOI and related proteins
7 Sobic.001G488200 aminotransferase, putative, expressed K00827: alanine-glyoxylate transaminase / (R)-3-amino-2-methylpropionate-pyruvate transaminase
8 Sobic.004G155300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.002G308400 "MYB transcription factor(Ortholog in rice:Huang et al., 2012)"(PubMedID : 31659858)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
10 Sobic.001G106400 serine esterase family protein, putative, expressed K10606: FANCL, E3 ubiquitin-protein ligase FANCL
11 Sobic.005G064200 eukaryotic aspartyl protease domain containing protein, expressed -
12 Sobic.003G062200 transcription factor HBP-1b, putative, expressed -
13 Sobic.007G208200 expressed protein -
14 Sobic.007G194100 nucleotide pyrophosphatase/phosphodiesterase, putative, expressed -
15 Sobic.001G154400 expp1 protein precursor, putative, expressed -
16 Sobic.002G419500 HAD superfamily phosphatase, putative, expressed -
17 Sobic.009G170800 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
18 Sobic.009G149800 subtilisin N-terminal Region family protein, expressed -
19 Sobic.003G403400 zinc finger, C3HC4 type domain containing protein, expressed -
20 Sobic.004G274500 OsFBD8 - F-box and FBD domain containing protein, expressed -


Gene co-expression network
sample Sobic006G066600 Sobic006G066600 Sobic004G318400 Sobic004G318400 Sobic006G066600--Sobic004G318400 Sobic004G067900 Sobic004G067900 Sobic006G066600--Sobic004G067900 Sobic004G102900 Sobic004G102900 Sobic006G066600--Sobic004G102900 Sobic006G244500 Sobic006G244500 Sobic006G066600--Sobic006G244500 Sobic007G018000 Sobic007G018000 Sobic006G066600--Sobic007G018000 Sobic004G028800 Sobic004G028800 Sobic006G066600--Sobic004G028800 Sobic001G488200 Sobic001G488200 Sobic006G066600--Sobic001G488200 Sobic004G155300 Sobic004G155300 Sobic006G066600--Sobic004G155300 Sobic002G308400 Sobic002G308400 Sobic006G066600--Sobic002G308400 Sobic004G318400--Sobic004G102900 Sobic007G208200 Sobic007G208200 Sobic004G318400--Sobic007G208200 Sobic003G304500 Sobic003G304500 Sobic004G318400--Sobic003G304500 Sobic004G274500 Sobic004G274500 Sobic004G318400--Sobic004G274500 Sobic004G318400--Sobic006G066600 Sobic004G196800 Sobic004G196800 Sobic004G318400--Sobic004G196800 Sobic009G025100 Sobic009G025100 Sobic004G318400--Sobic009G025100 Sobic004G318400--Sobic004G155300 Sobic007G194100 Sobic007G194100 Sobic004G318400--Sobic007G194100 Sobic004G067900--Sobic002G308400 Sobic004G067900--Sobic006G244500 Sobic004G067900--Sobic007G194100 Sobic003G062200 Sobic003G062200 Sobic004G067900--Sobic003G062200 Sobic003G295000 Sobic003G295000 Sobic004G067900--Sobic003G295000 Sobic004G067900--Sobic006G066600 Sobic002G240800 Sobic002G240800 Sobic004G067900--Sobic002G240800 Sobic007G034600 Sobic007G034600 Sobic004G067900--Sobic007G034600 Sobic001G106400 Sobic001G106400 Sobic004G067900--Sobic001G106400 Sobic004G102900--Sobic004G318400 Sobic004G102900--Sobic007G208200 Sobic001G050900 Sobic001G050900 Sobic004G102900--Sobic001G050900 Sobic001G154400 Sobic001G154400 Sobic004G102900--Sobic001G154400 Sobic004G102900--Sobic006G066600 Sobic002G240700 Sobic002G240700 Sobic004G102900--Sobic002G240700 Sobic004G102900--Sobic003G304500 Sobic004G102900--Sobic007G194100 Sobic002G113500 Sobic002G113500 Sobic004G102900--Sobic002G113500 Sobic009G009800 Sobic009G009800 Sobic006G244500--Sobic009G009800 Sobic006G244500--Sobic003G062200 Sobic003G376000 Sobic003G376000 Sobic006G244500--Sobic003G376000 Sobic005G158901 Sobic005G158901 Sobic006G244500--Sobic005G158901 Sobic006G151001 Sobic006G151001 Sobic006G244500--Sobic006G151001 Sobic008G037000 Sobic008G037000 Sobic006G244500--Sobic008G037000 Sobic006G096200 Sobic006G096200 Sobic006G244500--Sobic006G096200 Sobic010G031600 Sobic010G031600 Sobic006G244500--Sobic010G031600 Sobic001G277800 Sobic001G277800 Sobic006G244500--Sobic001G277800 Sobic005G064200 Sobic005G064200 Sobic007G018000--Sobic005G064200 Sobic007G182500 Sobic007G182500 Sobic007G018000--Sobic007G182500 Sobic007G018000--Sobic004G274500 Sobic003G438300 Sobic003G438300 Sobic007G018000--Sobic003G438300 Sobic007G109400 Sobic007G109400 Sobic007G018000--Sobic007G109400 Sobic002G061200 Sobic002G061200 Sobic007G018000--Sobic002G061200 Sobic010G195600 Sobic010G195600 Sobic007G018000--Sobic010G195600 Sobic009G039500 Sobic009G039500 Sobic007G018000--Sobic009G039500 Sobic005G109800 Sobic005G109800 Sobic007G018000--Sobic005G109800 Sobic004G028800--Sobic006G244500 Sobic004G028800--Sobic001G488200 Sobic004G028800--Sobic006G151001 Sobic004G028800--Sobic004G155300 Sobic004G028800--Sobic003G062200 Sobic004G345100 Sobic004G345100 Sobic004G028800--Sobic004G345100 Sobic004G028800--Sobic009G009800 Sobic002G359900 Sobic002G359900 Sobic004G028800--Sobic002G359900 Sobic004G028800--Sobic006G066600 Sobic001G488200--Sobic006G244500 Sobic001G488200--Sobic006G151001 Sobic001G488200--Sobic004G028800 Sobic001G488200--Sobic009G009800 Sobic001G488200--Sobic003G062200 Sobic006G206500 Sobic006G206500 Sobic001G488200--Sobic006G206500 Sobic001G488200--Sobic005G158901 Sobic003G421900 Sobic003G421900 Sobic001G488200--Sobic003G421900 Sobic001G488200--Sobic006G066600 Sobic004G155300--Sobic003G304500 Sobic004G155300--Sobic009G025100 Sobic004G155300--Sobic004G028800 Sobic004G155300--Sobic004G318400 Sobic004G155300--Sobic004G274500 Sobic004G155300--Sobic006G244500 Sobic001G170500 Sobic001G170500 Sobic004G155300--Sobic001G170500 Sobic004G155300--Sobic004G196800 Sobic004G155300--Sobic007G018000 Sobic002G308400--Sobic004G067900 Sobic002G308400--Sobic007G194100 Sobic002G308400--Sobic006G244500 Sobic002G308400--Sobic001G106400 Sobic002G308400--Sobic003G295000 Sobic002G308400--Sobic002G240700 Sobic010G037200 Sobic010G037200 Sobic002G308400--Sobic010G037200 Sobic001G442200 Sobic001G442200 Sobic002G308400--Sobic001G442200 Sobic002G308400--Sobic006G066600
Octagon: transcription factors


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