Gene annotation
Transcriptome id Sobic.001G488200.1
Synonym AGT2, Sb01g045680
Functional annotation aminotransferase, putative, expressed
UniProt A0A1B6QQ80
Pfam PF00202
Panther DB PTHR11986 PTHR11986:SF58
NCBI CDD -
KEGG Orthology K00827; alanine-glyoxylate transaminase / (R)-3-amino-2-methylpropionate-pyruvate transaminase
Gene Ontology GO:0008483; transaminase activity


Orthologs (automatic annotation)
TAIR AT4G39660 : alanine:glyoxylate aminotransferase 2
RAP-DB (Rice) LOC_Os03g07570.4 : aminotransferase, putative, expressed
MaizeGDB (Corn) Zm00025a000866
Brachypodium KQK23397
Barley HORVU4Hr1G075360.10 , HORVU4Hr1G075360.9 , HORVU4Hr1G075360.8 , HORVU4Hr1G075360.7 , HORVU4Hr1G075360.6 , HORVU4Hr1G075360.5 , HORVU4Hr1G075360.4 , HORVU4Hr1G075360.3 , HORVU4Hr1G075360.2 , HORVU4Hr1G075360.1
Wheat TraesCS4D02G286900 , TraesCS4A02G015900 , TraesCS4B02G288100
Populus -


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cDNA sequences
Sobic.001G488200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G244500 nuclease PA3, putative, expressed -
2 Sobic.006G151001 - -
3 Sobic.004G028800 expressed protein K19042: E3 ubiquitin-protein ligase BOI and related proteins
4 Sobic.009G009800 expressed protein -
5 Sobic.003G062200 transcription factor HBP-1b, putative, expressed -
6 Sobic.006G206500 60S ribosomal protein L7, putative, expressed -
7 Sobic.005G158901 - -
8 Sobic.003G421900 glycosyl hydrolases family 17, putative, expressed -
9 Sobic.006G066600 DNA-binding protein S1FA, putative, expressed -
10 Sobic.004G225800 GEM, putative, expressed -
11 Sobic.003G316350 - -
12 Sobic.003G376000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid transporter, putative, expressed -
13 Sobic.004G250900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@aldehyde dehydrogenase, putative, expressed K00128: aldehyde dehydrogenase (NAD+)
14 Sobic.008G037000 Ser/Thr protein phosphatase family protein, putative, expressed -
15 Sobic.003G000500 BRASSINOSTEROID INSENSITIVE 1 precursor, putative, expressed -
16 Sobic.004G318400 MTD1, putative, expressed -
17 Sobic.002G260800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
18 Sobic.004G067900 expressed protein -
19 Sobic.006G096300 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
20 Sobic.004G155300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic001G488200 Sobic001G488200 Sobic006G244500 Sobic006G244500 Sobic001G488200--Sobic006G244500 Sobic006G151001 Sobic006G151001 Sobic001G488200--Sobic006G151001 Sobic004G028800 Sobic004G028800 Sobic001G488200--Sobic004G028800 Sobic009G009800 Sobic009G009800 Sobic001G488200--Sobic009G009800 Sobic003G062200 Sobic003G062200 Sobic001G488200--Sobic003G062200 Sobic006G206500 Sobic006G206500 Sobic001G488200--Sobic006G206500 Sobic005G158901 Sobic005G158901 Sobic001G488200--Sobic005G158901 Sobic003G421900 Sobic003G421900 Sobic001G488200--Sobic003G421900 Sobic006G066600 Sobic006G066600 Sobic001G488200--Sobic006G066600 Sobic006G244500--Sobic009G009800 Sobic006G244500--Sobic003G062200 Sobic003G376000 Sobic003G376000 Sobic006G244500--Sobic003G376000 Sobic006G244500--Sobic005G158901 Sobic006G244500--Sobic006G151001 Sobic008G037000 Sobic008G037000 Sobic006G244500--Sobic008G037000 Sobic006G096200 Sobic006G096200 Sobic006G244500--Sobic006G096200 Sobic010G031600 Sobic010G031600 Sobic006G244500--Sobic010G031600 Sobic001G277800 Sobic001G277800 Sobic006G244500--Sobic001G277800 Sobic009G041100 Sobic009G041100 Sobic006G151001--Sobic009G041100 Sobic006G151001--Sobic003G376000 Sobic006G151001--Sobic008G037000 Sobic006G151001--Sobic003G062200 Sobic006G151001--Sobic006G096200 Sobic009G169650 Sobic009G169650 Sobic006G151001--Sobic009G169650 Sobic006G151001--Sobic006G244500 Sobic006G151001--Sobic009G009800 Sobic010G044600 Sobic010G044600 Sobic006G151001--Sobic010G044600 Sobic004G028800--Sobic006G244500 Sobic004G028800--Sobic001G488200 Sobic004G028800--Sobic006G151001 Sobic004G155300 Sobic004G155300 Sobic004G028800--Sobic004G155300 Sobic004G028800--Sobic003G062200 Sobic004G345100 Sobic004G345100 Sobic004G028800--Sobic004G345100 Sobic004G028800--Sobic009G009800 Sobic002G359900 Sobic002G359900 Sobic004G028800--Sobic002G359900 Sobic004G028800--Sobic006G066600 Sobic009G009800--Sobic006G244500 Sobic009G009800--Sobic010G031600 Sobic009G009800--Sobic003G376000 Sobic009G009800--Sobic001G277800 Sobic010G136300 Sobic010G136300 Sobic009G009800--Sobic010G136300 Sobic009G009800--Sobic005G158901 Sobic009G009800--Sobic008G037000 Sobic007G049400 Sobic007G049400 Sobic009G009800--Sobic007G049400 Sobic005G112066 Sobic005G112066 Sobic009G009800--Sobic005G112066 Sobic003G062200--Sobic006G244500 Sobic003G062200--Sobic009G009800 Sobic003G062200--Sobic003G376000 Sobic003G062200--Sobic008G037000 Sobic003G062200--Sobic006G151001 Sobic003G062200--Sobic006G096200 Sobic003G062200--Sobic010G031600 Sobic003G062200--Sobic010G136300 Sobic003G062200--Sobic009G041100 Sobic006G206500--Sobic005G158901 Sobic005G158801 Sobic005G158801 Sobic006G206500--Sobic005G158801 Sobic006G206500--Sobic006G244500 Sobic010G037200 Sobic010G037200 Sobic006G206500--Sobic010G037200 Sobic006G206500--Sobic009G009800 Sobic006G206500--Sobic001G488200 Sobic009G025100 Sobic009G025100 Sobic006G206500--Sobic009G025100 Sobic007G194100 Sobic007G194100 Sobic006G206500--Sobic007G194100 Sobic007G062700 Sobic007G062700 Sobic006G206500--Sobic007G062700 Sobic005G158901--Sobic009G009800 Sobic005G158901--Sobic010G031600 Sobic005G158901--Sobic006G244500 Sobic005G158901--Sobic010G136300 Sobic001G253501 Sobic001G253501 Sobic005G158901--Sobic001G253501 Sobic009G245750 Sobic009G245750 Sobic005G158901--Sobic009G245750 Sobic003G247700 Sobic003G247700 Sobic005G158901--Sobic003G247700 Sobic005G158901--Sobic007G049400 Sobic009G001600 Sobic009G001600 Sobic005G158901--Sobic009G001600 Sobic003G421900--Sobic009G009800 Sobic003G421900--Sobic006G244500 Sobic003G421900--Sobic006G096200 Sobic003G421900--Sobic010G136300 Sobic001G368900 Sobic001G368900 Sobic003G421900--Sobic001G368900 Sobic003G421900--Sobic008G037000 Sobic003G421900--Sobic001G277800 Sobic003G421900--Sobic010G031600 Sobic003G421900--Sobic003G376000 Sobic004G318400 Sobic004G318400 Sobic006G066600--Sobic004G318400 Sobic004G067900 Sobic004G067900 Sobic006G066600--Sobic004G067900 Sobic004G102900 Sobic004G102900 Sobic006G066600--Sobic004G102900 Sobic006G066600--Sobic006G244500 Sobic007G018000 Sobic007G018000 Sobic006G066600--Sobic007G018000 Sobic006G066600--Sobic004G028800 Sobic006G066600--Sobic001G488200 Sobic006G066600--Sobic004G155300 Sobic002G308400 Sobic002G308400 Sobic006G066600--Sobic002G308400
Octagon: transcription factors


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