Gene annotation
Transcriptome id Sobic.006G206500.5
Synonym Sb06g027740
Functional annotation 60S ribosomal protein L7, putative, expressed
UniProt A0A1B6PMX3
Pfam PF00327 PF08079
Panther DB PTHR11524
NCBI CDD KOG3184; 60S ribosomal protein L7
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G44120 : Ribosomal protein L30/L7 family protein
RAP-DB (Rice) LOC_Os04g51630.2 : 60S ribosomal protein L7, putative, expressed
MaizeGDB (Corn) Zm00025a030905 , Zm00025a054952 , Zm00025a056964 , Zm00025a009889
Brachypodium KQJ84442 , KQK12622 , KQK12623
Barley HORVU2Hr1G100970.6 , HORVU2Hr1G100970.5 , HORVU2Hr1G100970.4 , HORVU2Hr1G100970.3 , HORVU2Hr1G100970.2 , HORVU2Hr1G100970.1
Wheat TraesCS5D02G462800 , TraesCS5A02G452400 , TraesCS2A02G432600 , TraesCS2D02G430500 , TraesCS5B02G461300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G158901 - -
2 Sobic.005G158801 - -
3 Sobic.006G244500 nuclease PA3, putative, expressed -
4 Sobic.010G037200 SAM dependent carboxyl methyltransferase, putative, expressed -
5 Sobic.009G009800 expressed protein -
6 Sobic.001G488200 aminotransferase, putative, expressed K00827: alanine-glyoxylate transaminase / (R)-3-amino-2-methylpropionate-pyruvate transaminase
7 Sobic.009G025100 transporter, putative, expressed -
8 Sobic.007G194100 nucleotide pyrophosphatase/phosphodiesterase, putative, expressed -
9 Sobic.007G062700 zinc finger family protein, putative, expressed -
10 Sobic.004G274500 OsFBD8 - F-box and FBD domain containing protein, expressed -
11 Sobic.004G067900 expressed protein -
12 Sobic.002G308400 "MYB transcription factor(Ortholog in rice:Huang et al., 2012)"(PubMedID : 31659858)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
13 Sobic.003G376000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid transporter, putative, expressed -
14 Sobic.006G028000 amidase, putative, expressed K01426: E3.5.1.4, amidase
15 Sobic.003G303500 homeobox and START domains containing protein, putative, expressed K09338: homeobox-leucine zipper protein
16 Sobic.003G062200 transcription factor HBP-1b, putative, expressed -
17 Sobic.004G318400 MTD1, putative, expressed -
18 Sobic.010G136300 osMFT1 MFT-Like1 homologous to Mother of FT and TFL1 gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed -
19 Sobic.004G254400 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed -
20 Sobic.010G031600 early nodulin 93 ENOD93 protein, putative, expressed -


Gene co-expression network
sample Sobic006G206500 Sobic006G206500 Sobic005G158901 Sobic005G158901 Sobic006G206500--Sobic005G158901 Sobic005G158801 Sobic005G158801 Sobic006G206500--Sobic005G158801 Sobic006G244500 Sobic006G244500 Sobic006G206500--Sobic006G244500 Sobic010G037200 Sobic010G037200 Sobic006G206500--Sobic010G037200 Sobic009G009800 Sobic009G009800 Sobic006G206500--Sobic009G009800 Sobic001G488200 Sobic001G488200 Sobic006G206500--Sobic001G488200 Sobic009G025100 Sobic009G025100 Sobic006G206500--Sobic009G025100 Sobic007G194100 Sobic007G194100 Sobic006G206500--Sobic007G194100 Sobic007G062700 Sobic007G062700 Sobic006G206500--Sobic007G062700 Sobic005G158901--Sobic009G009800 Sobic010G031600 Sobic010G031600 Sobic005G158901--Sobic010G031600 Sobic005G158901--Sobic006G244500 Sobic010G136300 Sobic010G136300 Sobic005G158901--Sobic010G136300 Sobic001G253501 Sobic001G253501 Sobic005G158901--Sobic001G253501 Sobic009G245750 Sobic009G245750 Sobic005G158901--Sobic009G245750 Sobic003G247700 Sobic003G247700 Sobic005G158901--Sobic003G247700 Sobic007G049400 Sobic007G049400 Sobic005G158901--Sobic007G049400 Sobic009G001600 Sobic009G001600 Sobic005G158901--Sobic009G001600 Sobic005G158801--Sobic006G206500 Sobic008G105200 Sobic008G105200 Sobic005G158801--Sobic008G105200 Sobic005G158700 Sobic005G158700 Sobic005G158801--Sobic005G158700 Sobic004G132800 Sobic004G132800 Sobic005G158801--Sobic004G132800 Sobic005G158801--Sobic010G037200 Sobic002G308400 Sobic002G308400 Sobic005G158801--Sobic002G308400 Sobic005G158801--Sobic007G194100 Sobic005G064200 Sobic005G064200 Sobic005G158801--Sobic005G064200 Sobic004G017600 Sobic004G017600 Sobic005G158801--Sobic004G017600 Sobic006G244500--Sobic009G009800 Sobic003G062200 Sobic003G062200 Sobic006G244500--Sobic003G062200 Sobic003G376000 Sobic003G376000 Sobic006G244500--Sobic003G376000 Sobic006G244500--Sobic005G158901 Sobic006G151001 Sobic006G151001 Sobic006G244500--Sobic006G151001 Sobic008G037000 Sobic008G037000 Sobic006G244500--Sobic008G037000 Sobic006G096200 Sobic006G096200 Sobic006G244500--Sobic006G096200 Sobic006G244500--Sobic010G031600 Sobic001G277800 Sobic001G277800 Sobic006G244500--Sobic001G277800 Sobic010G037200--Sobic009G025100 Sobic008G039700 Sobic008G039700 Sobic010G037200--Sobic008G039700 Sobic010G227400 Sobic010G227400 Sobic010G037200--Sobic010G227400 Sobic010G085700 Sobic010G085700 Sobic010G037200--Sobic010G085700 Sobic009G040000 Sobic009G040000 Sobic010G037200--Sobic009G040000 Sobic001G068200 Sobic001G068200 Sobic010G037200--Sobic001G068200 Sobic001G253400 Sobic001G253400 Sobic010G037200--Sobic001G253400 Sobic001G158600 Sobic001G158600 Sobic010G037200--Sobic001G158600 Sobic006G051750 Sobic006G051750 Sobic010G037200--Sobic006G051750 Sobic009G009800--Sobic006G244500 Sobic009G009800--Sobic010G031600 Sobic009G009800--Sobic003G376000 Sobic009G009800--Sobic001G277800 Sobic009G009800--Sobic010G136300 Sobic009G009800--Sobic005G158901 Sobic009G009800--Sobic008G037000 Sobic009G009800--Sobic007G049400 Sobic005G112066 Sobic005G112066 Sobic009G009800--Sobic005G112066 Sobic001G488200--Sobic006G244500 Sobic001G488200--Sobic006G151001 Sobic004G028800 Sobic004G028800 Sobic001G488200--Sobic004G028800 Sobic001G488200--Sobic009G009800 Sobic001G488200--Sobic003G062200 Sobic001G488200--Sobic006G206500 Sobic001G488200--Sobic005G158901 Sobic003G421900 Sobic003G421900 Sobic001G488200--Sobic003G421900 Sobic006G066600 Sobic006G066600 Sobic001G488200--Sobic006G066600 Sobic001G170500 Sobic001G170500 Sobic009G025100--Sobic001G170500 Sobic009G025100--Sobic008G039700 Sobic009G025100--Sobic010G037200 Sobic010G168500 Sobic010G168500 Sobic009G025100--Sobic010G168500 Sobic008G081700 Sobic008G081700 Sobic009G025100--Sobic008G081700 Sobic009G071600 Sobic009G071600 Sobic009G025100--Sobic009G071600 Sobic009G025100--Sobic010G227400 Sobic008G088450 Sobic008G088450 Sobic009G025100--Sobic008G088450 Sobic002G338600 Sobic002G338600 Sobic009G025100--Sobic002G338600 Sobic002G240700 Sobic002G240700 Sobic007G194100--Sobic002G240700 Sobic007G194100--Sobic010G037200 Sobic009G199300 Sobic009G199300 Sobic007G194100--Sobic009G199300 Sobic007G194100--Sobic002G308400 Sobic005G098700 Sobic005G098700 Sobic007G194100--Sobic005G098700 Sobic007G194100--Sobic009G025100 Sobic004G067900 Sobic004G067900 Sobic007G194100--Sobic004G067900 Sobic007G208200 Sobic007G208200 Sobic007G194100--Sobic007G208200 Sobic001G442200 Sobic001G442200 Sobic007G194100--Sobic001G442200 Sobic005G140300 Sobic005G140300 Sobic007G062700--Sobic005G140300 Sobic006G034275 Sobic006G034275 Sobic007G062700--Sobic006G034275 Sobic002G143700 Sobic002G143700 Sobic007G062700--Sobic002G143700 Sobic010G153800 Sobic010G153800 Sobic007G062700--Sobic010G153800 Sobic005G199101 Sobic005G199101 Sobic007G062700--Sobic005G199101 Sobic005G176500 Sobic005G176500 Sobic007G062700--Sobic005G176500 Sobic005G225000 Sobic005G225000 Sobic007G062700--Sobic005G225000 Sobic010G142300 Sobic010G142300 Sobic007G062700--Sobic010G142300 Sobic005G187100 Sobic005G187100 Sobic007G062700--Sobic005G187100
Octagon: transcription factors


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