Gene annotation
Transcriptome id Sobic.006G244500.1
Synonym Sb06g031030, ENDO4
Functional annotation nuclease PA3, putative, expressed
UniProt C5Y9F7
Pfam PF02265
Panther DB PTHR33146 PTHR33146:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006308; DNA catabolic process GO:0004519endonuclease activity GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G68290 : endonuclease 2
RAP-DB (Rice) LOC_Os04g55850.1 : nuclease PA3, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat TraesCS2D02G508400
Populus -


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cDNA sequences
Sobic.006G244500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G009800 expressed protein -
2 Sobic.003G062200 transcription factor HBP-1b, putative, expressed -
3 Sobic.003G376000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid transporter, putative, expressed -
4 Sobic.005G158901 - -
5 Sobic.006G151001 - -
6 Sobic.008G037000 Ser/Thr protein phosphatase family protein, putative, expressed -
7 Sobic.006G096200 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
8 Sobic.010G031600 early nodulin 93 ENOD93 protein, putative, expressed -
9 Sobic.001G277800 transferase family protein, putative, expressed -
10 Sobic.003G421900 glycosyl hydrolases family 17, putative, expressed -
11 Sobic.010G136300 osMFT1 MFT-Like1 homologous to Mother of FT and TFL1 gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed -
12 Sobic.009G025100 transporter, putative, expressed -
13 Sobic.003G000500 BRASSINOSTEROID INSENSITIVE 1 precursor, putative, expressed -
14 Sobic.001G488200 aminotransferase, putative, expressed K00827: alanine-glyoxylate transaminase / (R)-3-amino-2-methylpropionate-pyruvate transaminase
15 Sobic.004G254400 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed -
16 Sobic.010G168500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
17 Sobic.007G049400 OsFBX381 - F-box domain containing protein, expressed -
18 Sobic.001G253501 - -
19 Sobic.009G245750 - -
20 Sobic.004G067900 expressed protein -


Gene co-expression network
sample Sobic006G244500 Sobic006G244500 Sobic009G009800 Sobic009G009800 Sobic006G244500--Sobic009G009800 Sobic003G062200 Sobic003G062200 Sobic006G244500--Sobic003G062200 Sobic003G376000 Sobic003G376000 Sobic006G244500--Sobic003G376000 Sobic005G158901 Sobic005G158901 Sobic006G244500--Sobic005G158901 Sobic006G151001 Sobic006G151001 Sobic006G244500--Sobic006G151001 Sobic008G037000 Sobic008G037000 Sobic006G244500--Sobic008G037000 Sobic006G096200 Sobic006G096200 Sobic006G244500--Sobic006G096200 Sobic010G031600 Sobic010G031600 Sobic006G244500--Sobic010G031600 Sobic001G277800 Sobic001G277800 Sobic006G244500--Sobic001G277800 Sobic009G009800--Sobic006G244500 Sobic009G009800--Sobic010G031600 Sobic009G009800--Sobic003G376000 Sobic009G009800--Sobic001G277800 Sobic010G136300 Sobic010G136300 Sobic009G009800--Sobic010G136300 Sobic009G009800--Sobic005G158901 Sobic009G009800--Sobic008G037000 Sobic007G049400 Sobic007G049400 Sobic009G009800--Sobic007G049400 Sobic005G112066 Sobic005G112066 Sobic009G009800--Sobic005G112066 Sobic003G062200--Sobic006G244500 Sobic003G062200--Sobic009G009800 Sobic003G062200--Sobic003G376000 Sobic003G062200--Sobic008G037000 Sobic003G062200--Sobic006G151001 Sobic003G062200--Sobic006G096200 Sobic003G062200--Sobic010G031600 Sobic003G062200--Sobic010G136300 Sobic009G041100 Sobic009G041100 Sobic003G062200--Sobic009G041100 Sobic003G376000--Sobic010G136300 Sobic003G376000--Sobic010G031600 Sobic003G376000--Sobic001G277800 Sobic003G376000--Sobic009G009800 Sobic003G376000--Sobic006G096200 Sobic002G077500 Sobic002G077500 Sobic003G376000--Sobic002G077500 Sobic003G376000--Sobic005G112066 Sobic001G326000 Sobic001G326000 Sobic003G376000--Sobic001G326000 Sobic003G376000--Sobic007G049400 Sobic005G158901--Sobic009G009800 Sobic005G158901--Sobic010G031600 Sobic005G158901--Sobic006G244500 Sobic005G158901--Sobic010G136300 Sobic001G253501 Sobic001G253501 Sobic005G158901--Sobic001G253501 Sobic009G245750 Sobic009G245750 Sobic005G158901--Sobic009G245750 Sobic003G247700 Sobic003G247700 Sobic005G158901--Sobic003G247700 Sobic005G158901--Sobic007G049400 Sobic009G001600 Sobic009G001600 Sobic005G158901--Sobic009G001600 Sobic006G151001--Sobic009G041100 Sobic006G151001--Sobic003G376000 Sobic006G151001--Sobic008G037000 Sobic006G151001--Sobic003G062200 Sobic006G151001--Sobic006G096200 Sobic009G169650 Sobic009G169650 Sobic006G151001--Sobic009G169650 Sobic006G151001--Sobic006G244500 Sobic006G151001--Sobic009G009800 Sobic010G044600 Sobic010G044600 Sobic006G151001--Sobic010G044600 Sobic008G037000--Sobic010G136300 Sobic008G037000--Sobic003G376000 Sobic008G037000--Sobic010G031600 Sobic008G037000--Sobic001G277800 Sobic008G037000--Sobic009G009800 Sobic008G037000--Sobic009G041100 Sobic008G037000--Sobic006G096200 Sobic007G156300 Sobic007G156300 Sobic008G037000--Sobic007G156300 Sobic006G031600 Sobic006G031600 Sobic008G037000--Sobic006G031600 Sobic006G096200--Sobic010G136300 Sobic003G438700 Sobic003G438700 Sobic006G096200--Sobic003G438700 Sobic008G013100 Sobic008G013100 Sobic006G096200--Sobic008G013100 Sobic004G313800 Sobic004G313800 Sobic006G096200--Sobic004G313800 Sobic003G105600 Sobic003G105600 Sobic006G096200--Sobic003G105600 Sobic006G154300 Sobic006G154300 Sobic006G096200--Sobic006G154300 Sobic006G059900 Sobic006G059900 Sobic006G096200--Sobic006G059900 Sobic009G010150 Sobic009G010150 Sobic006G096200--Sobic009G010150 Sobic006G096200--Sobic010G031600 Sobic010G031600--Sobic001G277800 Sobic009G186400 Sobic009G186400 Sobic010G031600--Sobic009G186400 Sobic007G083300 Sobic007G083300 Sobic010G031600--Sobic007G083300 Sobic010G031600--Sobic002G077500 SobicK043500 SobicK043500 Sobic010G031600--SobicK043500 Sobic007G070700 Sobic007G070700 Sobic010G031600--Sobic007G070700 Sobic010G031600--Sobic003G105600 Sobic010G031600--Sobic007G049400 Sobic002G077600 Sobic002G077600 Sobic010G031600--Sobic002G077600 Sobic001G277800--Sobic010G031600 Sobic001G277800--Sobic007G049400 Sobic001G277800--Sobic007G083300 Sobic001G277800--Sobic007G070700 Sobic001G277800--SobicK043500 Sobic001G277800--Sobic002G077500 Sobic001G277800--Sobic002G077600 Sobic005G140400 Sobic005G140400 Sobic001G277800--Sobic005G140400 Sobic001G277800--Sobic009G186400
Octagon: transcription factors


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