Gene annotation
Transcriptome id Sobic.006G028000.1
Synonym Sb06g002870
Functional annotation amidase, putative, expressed
UniProt C5YCU6
Pfam PF01425
Panther DB PTHR11895 PTHR11895:SF88
NCBI CDD KOG1211; Amidases
KEGG Orthology K01426; E3.5.1.4, amidase
Gene Ontology GO:0016884; carbon-nitrogen ligase activity, with glutamine as amido-N-donor


Orthologs (automatic annotation)
TAIR AT4G34880 : Amidase family protein
RAP-DB (Rice) LOC_Os04g10410.1 : amidase, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G205100 AP2 domain containing protein, expressed -
2 Sobic.002G338600 expressed protein -
3 Sobic.010G200200 AP2 domain containing protein, expressed -
4 Sobic.010G200400 AP2 domain containing protein, expressed -
5 Sobic.008G039700 expressed protein -
6 Sobic.001G259250 - -
7 Sobic.005G153200 - -
8 Sobic.002G028100 LTPL169 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
9 Sobic.004G142000 - -
10 Sobic.002G089400 DEF8 - Defensin and Defensin-like DEFL family, expressed -
11 Sobic.008G081700 - -
12 Sobic.002G367600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@"BG2(Ortholog in rice:Xu et al., 2015)"(PubMedID : 31659863)@cytochrome P450, putative, expressed -
13 Sobic.007G025300 helix-loop-helix DNA-binding domain containing protein, expressed -
14 Sobic.006G051750 - -
15 Sobic.009G116500 esterase, putative, expressed -
16 Sobic.001G297800 expressed protein -
17 Sobic.004G261000 expressed protein -
18 Sobic.001G535900 aquaporin protein, putative, expressed K09873: aquaporin TIP
19 Sobic.009G001600 "kafirin seed storage protein, similar to Beta-kafirin precursor"(PubMedID : 21853065)@PROLM24 - Prolamin precursor, expressed -
20 Sobic.008G103066 - -


Gene co-expression network
sample Sobic006G028000 Sobic006G028000 Sobic007G205100 Sobic007G205100 Sobic006G028000--Sobic007G205100 Sobic002G338600 Sobic002G338600 Sobic006G028000--Sobic002G338600 Sobic010G200200 Sobic010G200200 Sobic006G028000--Sobic010G200200 Sobic010G200400 Sobic010G200400 Sobic006G028000--Sobic010G200400 Sobic008G039700 Sobic008G039700 Sobic006G028000--Sobic008G039700 Sobic001G259250 Sobic001G259250 Sobic006G028000--Sobic001G259250 Sobic005G153200 Sobic005G153200 Sobic006G028000--Sobic005G153200 Sobic002G028100 Sobic002G028100 Sobic006G028000--Sobic002G028100 Sobic004G142000 Sobic004G142000 Sobic006G028000--Sobic004G142000 Sobic007G205100--Sobic010G200400 Sobic007G205100--Sobic002G338600 Sobic002G089400 Sobic002G089400 Sobic007G205100--Sobic002G089400 Sobic007G205100--Sobic002G028100 Sobic007G205100--Sobic010G200200 Sobic008G081700 Sobic008G081700 Sobic007G205100--Sobic008G081700 Sobic002G367600 Sobic002G367600 Sobic007G205100--Sobic002G367600 Sobic007G025300 Sobic007G025300 Sobic007G205100--Sobic007G025300 Sobic007G205100--Sobic001G259250 Sobic002G338600--Sobic007G205100 Sobic002G338600--Sobic010G200200 Sobic002G338600--Sobic008G081700 Sobic002G338600--Sobic010G200400 Sobic002G338600--Sobic002G028100 Sobic002G338600--Sobic001G259250 Sobic002G338600--Sobic005G153200 Sobic002G338600--Sobic004G142000 Sobic002G338600--Sobic002G089400 Sobic010G200200--Sobic001G259250 Sobic010G200200--Sobic005G153200 Sobic010G200200--Sobic004G142000 Sobic010G200200--Sobic002G338600 Sobic010G200200--Sobic007G205100 Sobic010G200200--Sobic008G081700 Sobic010G200200--Sobic002G028100 Sobic006G051750 Sobic006G051750 Sobic010G200200--Sobic006G051750 Sobic010G200200--Sobic010G200400 Sobic010G200400--Sobic007G205100 Sobic010G200400--Sobic002G089400 Sobic010G200400--Sobic002G338600 Sobic010G200400--Sobic002G028100 Sobic010G200400--Sobic007G025300 Sobic010G200400--Sobic008G081700 Sobic010G200400--Sobic010G200200 Sobic010G200400--Sobic002G367600 Sobic009G116500 Sobic009G116500 Sobic010G200400--Sobic009G116500 Sobic008G039700--Sobic006G051750 Sobic010G085700 Sobic010G085700 Sobic008G039700--Sobic010G085700 Sobic001G068200 Sobic001G068200 Sobic008G039700--Sobic001G068200 Sobic004G261000 Sobic004G261000 Sobic008G039700--Sobic004G261000 Sobic004G099750 Sobic004G099750 Sobic008G039700--Sobic004G099750 Sobic001G158600 Sobic001G158600 Sobic008G039700--Sobic001G158600 Sobic001G253400 Sobic001G253400 Sobic008G039700--Sobic001G253400 Sobic008G039700--Sobic010G200400 Sobic008G039700--Sobic005G153200 Sobic001G259250--Sobic005G153200 Sobic001G259250--Sobic004G142000 Sobic001G259250--Sobic010G200200 Sobic001G259250--Sobic006G051750 Sobic001G259250--Sobic002G338600 Sobic001G259250--Sobic004G261000 Sobic001G259250--Sobic008G081700 Sobic001G259250--Sobic007G205100 Sobic007G034900 Sobic007G034900 Sobic001G259250--Sobic007G034900 Sobic005G153200--Sobic001G259250 Sobic005G153200--Sobic004G142000 Sobic005G153200--Sobic010G200200 Sobic005G153200--Sobic006G051750 Sobic005G153200--Sobic002G338600 Sobic005G153200--Sobic004G261000 Sobic005G153200--Sobic008G081700 Sobic005G153200--Sobic007G205100 Sobic005G153200--Sobic007G034900 Sobic002G028100--Sobic002G367600 Sobic001G297800 Sobic001G297800 Sobic002G028100--Sobic001G297800 Sobic002G028100--Sobic002G338600 Sobic002G028100--Sobic007G205100 Sobic002G028100--Sobic002G089400 Sobic001G535900 Sobic001G535900 Sobic002G028100--Sobic001G535900 Sobic002G028100--Sobic010G200400 Sobic009G001600 Sobic009G001600 Sobic002G028100--Sobic009G001600 Sobic002G028100--Sobic010G200200 Sobic004G142000--Sobic001G259250 Sobic004G142000--Sobic005G153200 Sobic004G142000--Sobic010G200200 Sobic004G142000--Sobic006G051750 Sobic004G142000--Sobic002G338600 Sobic004G142000--Sobic004G261000 Sobic004G142000--Sobic008G081700 Sobic004G142000--Sobic007G205100 Sobic004G142000--Sobic007G034900
Octagon: transcription factors


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