Gene annotation
Transcriptome id Sobic.008G081700.1
Synonym
Functional annotation -
UniProt A0A1B6PC68
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.008G081700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G338600 expressed protein -
2 Sobic.010G200200 AP2 domain containing protein, expressed -
3 Sobic.007G205100 AP2 domain containing protein, expressed -
4 Sobic.010G200400 AP2 domain containing protein, expressed -
5 Sobic.001G259250 - -
6 Sobic.005G153200 - -
7 Sobic.004G142000 - -
8 Sobic.002G028100 LTPL169 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
9 Sobic.009G116500 esterase, putative, expressed -
10 Sobic.004G261000 expressed protein -
11 Sobic.002G089400 DEF8 - Defensin and Defensin-like DEFL family, expressed -
12 Sobic.002G367600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@"BG2(Ortholog in rice:Xu et al., 2015)"(PubMedID : 31659863)@cytochrome P450, putative, expressed -
13 Sobic.006G051750 - -
14 Sobic.001G297800 expressed protein -
15 Sobic.007G034900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@cytochrome P450, putative, expressed -
16 Sobic.007G025300 helix-loop-helix DNA-binding domain containing protein, expressed -
17 Sobic.001G535900 aquaporin protein, putative, expressed K09873: aquaporin TIP
18 Sobic.008G103066 - -
19 Sobic.004G099750 - -
20 Sobic.001G158600 MYB family transcription factor, putative, expressed -


Gene co-expression network
sample Sobic008G081700 Sobic008G081700 Sobic002G338600 Sobic002G338600 Sobic008G081700--Sobic002G338600 Sobic010G200200 Sobic010G200200 Sobic008G081700--Sobic010G200200 Sobic007G205100 Sobic007G205100 Sobic008G081700--Sobic007G205100 Sobic010G200400 Sobic010G200400 Sobic008G081700--Sobic010G200400 Sobic001G259250 Sobic001G259250 Sobic008G081700--Sobic001G259250 Sobic005G153200 Sobic005G153200 Sobic008G081700--Sobic005G153200 Sobic004G142000 Sobic004G142000 Sobic008G081700--Sobic004G142000 Sobic002G028100 Sobic002G028100 Sobic008G081700--Sobic002G028100 Sobic009G116500 Sobic009G116500 Sobic008G081700--Sobic009G116500 Sobic002G338600--Sobic007G205100 Sobic002G338600--Sobic010G200200 Sobic002G338600--Sobic008G081700 Sobic002G338600--Sobic010G200400 Sobic002G338600--Sobic002G028100 Sobic002G338600--Sobic001G259250 Sobic002G338600--Sobic005G153200 Sobic002G338600--Sobic004G142000 Sobic002G089400 Sobic002G089400 Sobic002G338600--Sobic002G089400 Sobic010G200200--Sobic001G259250 Sobic010G200200--Sobic005G153200 Sobic010G200200--Sobic004G142000 Sobic010G200200--Sobic002G338600 Sobic010G200200--Sobic007G205100 Sobic010G200200--Sobic008G081700 Sobic010G200200--Sobic002G028100 Sobic006G051750 Sobic006G051750 Sobic010G200200--Sobic006G051750 Sobic010G200200--Sobic010G200400 Sobic007G205100--Sobic010G200400 Sobic007G205100--Sobic002G338600 Sobic007G205100--Sobic002G089400 Sobic007G205100--Sobic002G028100 Sobic007G205100--Sobic010G200200 Sobic007G205100--Sobic008G081700 Sobic002G367600 Sobic002G367600 Sobic007G205100--Sobic002G367600 Sobic007G025300 Sobic007G025300 Sobic007G205100--Sobic007G025300 Sobic007G205100--Sobic001G259250 Sobic010G200400--Sobic007G205100 Sobic010G200400--Sobic002G089400 Sobic010G200400--Sobic002G338600 Sobic010G200400--Sobic002G028100 Sobic010G200400--Sobic007G025300 Sobic010G200400--Sobic008G081700 Sobic010G200400--Sobic010G200200 Sobic010G200400--Sobic002G367600 Sobic010G200400--Sobic009G116500 Sobic001G259250--Sobic005G153200 Sobic001G259250--Sobic004G142000 Sobic001G259250--Sobic010G200200 Sobic001G259250--Sobic006G051750 Sobic001G259250--Sobic002G338600 Sobic004G261000 Sobic004G261000 Sobic001G259250--Sobic004G261000 Sobic001G259250--Sobic008G081700 Sobic001G259250--Sobic007G205100 Sobic007G034900 Sobic007G034900 Sobic001G259250--Sobic007G034900 Sobic005G153200--Sobic001G259250 Sobic005G153200--Sobic004G142000 Sobic005G153200--Sobic010G200200 Sobic005G153200--Sobic006G051750 Sobic005G153200--Sobic002G338600 Sobic005G153200--Sobic004G261000 Sobic005G153200--Sobic008G081700 Sobic005G153200--Sobic007G205100 Sobic005G153200--Sobic007G034900 Sobic004G142000--Sobic001G259250 Sobic004G142000--Sobic005G153200 Sobic004G142000--Sobic010G200200 Sobic004G142000--Sobic006G051750 Sobic004G142000--Sobic002G338600 Sobic004G142000--Sobic004G261000 Sobic004G142000--Sobic008G081700 Sobic004G142000--Sobic007G205100 Sobic004G142000--Sobic007G034900 Sobic002G028100--Sobic002G367600 Sobic001G297800 Sobic001G297800 Sobic002G028100--Sobic001G297800 Sobic002G028100--Sobic002G338600 Sobic002G028100--Sobic007G205100 Sobic002G028100--Sobic002G089400 Sobic001G535900 Sobic001G535900 Sobic002G028100--Sobic001G535900 Sobic002G028100--Sobic010G200400 Sobic009G001600 Sobic009G001600 Sobic002G028100--Sobic009G001600 Sobic002G028100--Sobic010G200200 Sobic009G116500--Sobic007G034900 Sobic009G116500--Sobic002G089400 Sobic009G116500--Sobic002G338600 Sobic009G116500--Sobic004G261000 Sobic009G116500--Sobic010G200200 Sobic009G116500--Sobic007G205100 Sobic009G116500--Sobic001G297800 Sobic009G116500--Sobic008G081700 Sobic009G116500--Sobic001G259250
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.