Gene annotation
Transcriptome id Sobic.002G089400.1
Synonym Sb02g007390, PDF2.2, LCR69
Functional annotation DEF8 - Defensin and Defensin-like DEFL family, expressed
UniProt C5X206
Pfam PF00304
Panther DB PTHR33147 PTHR33147:SF13
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G02100 : low-molecular-weight cysteine-rich 69
RAP-DB (Rice) LOC_Os03g03810.1 : DEF8 - Defensin and Defensin-like DEFL family, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G089400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G200400 AP2 domain containing protein, expressed -
2 Sobic.007G205100 AP2 domain containing protein, expressed -
3 Sobic.002G028100 LTPL169 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
4 Sobic.002G338600 expressed protein -
5 Sobic.007G025300 helix-loop-helix DNA-binding domain containing protein, expressed -
6 Sobic.001G297800 expressed protein -
7 Sobic.002G367600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@"BG2(Ortholog in rice:Xu et al., 2015)"(PubMedID : 31659863)@cytochrome P450, putative, expressed -
8 Sobic.009G116500 esterase, putative, expressed -
9 Sobic.001G535900 aquaporin protein, putative, expressed K09873: aquaporin TIP
10 Sobic.008G081700 - -
11 Sobic.010G200200 AP2 domain containing protein, expressed -
12 Sobic.002G211700 storage protein(PubMedID : 16668596)@"kafirin seed storage protein, delta-kafirin precursor"(PubMedID : 21853065)@PROLM23 - Prolamin precursor, expressed -
13 Sobic.009G001600 "kafirin seed storage protein, similar to Beta-kafirin precursor"(PubMedID : 21853065)@PROLM24 - Prolamin precursor, expressed -
14 Sobic.008G103066 - -
15 Sobic.003G247700 cold acclimation protein WCOR413, putative, expressed -
16 Sobic.006G018400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@protein phosphatase 2C, putative, expressed K14497: protein phosphatase 2C
17 Sobic.001G259250 - -
18 Sobic.005G153200 - -
19 Sobic.004G142000 - -
20 Sobic.004G261000 expressed protein -


Gene co-expression network
sample Sobic002G089400 Sobic002G089400 Sobic010G200400 Sobic010G200400 Sobic002G089400--Sobic010G200400 Sobic007G205100 Sobic007G205100 Sobic002G089400--Sobic007G205100 Sobic002G028100 Sobic002G028100 Sobic002G089400--Sobic002G028100 Sobic002G338600 Sobic002G338600 Sobic002G089400--Sobic002G338600 Sobic007G025300 Sobic007G025300 Sobic002G089400--Sobic007G025300 Sobic001G297800 Sobic001G297800 Sobic002G089400--Sobic001G297800 Sobic002G367600 Sobic002G367600 Sobic002G089400--Sobic002G367600 Sobic009G116500 Sobic009G116500 Sobic002G089400--Sobic009G116500 Sobic001G535900 Sobic001G535900 Sobic002G089400--Sobic001G535900 Sobic010G200400--Sobic007G205100 Sobic010G200400--Sobic002G089400 Sobic010G200400--Sobic002G338600 Sobic010G200400--Sobic002G028100 Sobic010G200400--Sobic007G025300 Sobic008G081700 Sobic008G081700 Sobic010G200400--Sobic008G081700 Sobic010G200200 Sobic010G200200 Sobic010G200400--Sobic010G200200 Sobic010G200400--Sobic002G367600 Sobic010G200400--Sobic009G116500 Sobic007G205100--Sobic010G200400 Sobic007G205100--Sobic002G338600 Sobic007G205100--Sobic002G089400 Sobic007G205100--Sobic002G028100 Sobic007G205100--Sobic010G200200 Sobic007G205100--Sobic008G081700 Sobic007G205100--Sobic002G367600 Sobic007G205100--Sobic007G025300 Sobic001G259250 Sobic001G259250 Sobic007G205100--Sobic001G259250 Sobic002G028100--Sobic002G367600 Sobic002G028100--Sobic001G297800 Sobic002G028100--Sobic002G338600 Sobic002G028100--Sobic007G205100 Sobic002G028100--Sobic002G089400 Sobic002G028100--Sobic001G535900 Sobic002G028100--Sobic010G200400 Sobic009G001600 Sobic009G001600 Sobic002G028100--Sobic009G001600 Sobic002G028100--Sobic010G200200 Sobic002G338600--Sobic007G205100 Sobic002G338600--Sobic010G200200 Sobic002G338600--Sobic008G081700 Sobic002G338600--Sobic010G200400 Sobic002G338600--Sobic002G028100 Sobic002G338600--Sobic001G259250 Sobic005G153200 Sobic005G153200 Sobic002G338600--Sobic005G153200 Sobic004G142000 Sobic004G142000 Sobic002G338600--Sobic004G142000 Sobic002G338600--Sobic002G089400 Sobic008G103066 Sobic008G103066 Sobic007G025300--Sobic008G103066 Sobic007G025300--Sobic002G089400 Sobic007G025300--Sobic010G200400 Sobic006G062700 Sobic006G062700 Sobic007G025300--Sobic006G062700 Sobic005G174900 Sobic005G174900 Sobic007G025300--Sobic005G174900 Sobic007G025300--Sobic009G001600 Sobic007G025300--Sobic002G367600 Sobic007G025300--Sobic001G535900 Sobic007G025300--Sobic007G205100 Sobic001G297800--Sobic002G367600 Sobic001G297800--Sobic001G535900 Sobic001G297800--Sobic002G028100 Sobic002G211700 Sobic002G211700 Sobic001G297800--Sobic002G211700 Sobic001G297800--Sobic002G089400 Sobic001G297800--Sobic009G001600 Sobic003G247700 Sobic003G247700 Sobic001G297800--Sobic003G247700 Sobic001G297800--Sobic009G116500 Sobic006G018400 Sobic006G018400 Sobic001G297800--Sobic006G018400 Sobic002G367600--Sobic002G028100 Sobic002G367600--Sobic001G535900 Sobic002G367600--Sobic001G297800 Sobic002G367600--Sobic002G211700 Sobic002G367600--Sobic009G001600 Sobic002G367600--Sobic003G247700 Sobic002G367600--Sobic002G089400 Sobic002G367600--Sobic008G103066 Sobic002G367600--Sobic007G025300 Sobic007G034900 Sobic007G034900 Sobic009G116500--Sobic007G034900 Sobic009G116500--Sobic002G089400 Sobic009G116500--Sobic002G338600 Sobic004G261000 Sobic004G261000 Sobic009G116500--Sobic004G261000 Sobic009G116500--Sobic010G200200 Sobic009G116500--Sobic007G205100 Sobic009G116500--Sobic001G297800 Sobic009G116500--Sobic008G081700 Sobic009G116500--Sobic001G259250 Sobic001G535900--Sobic002G211700 Sobic001G535900--Sobic009G001600 Sobic001G535900--Sobic002G367600 Sobic001G535900--Sobic003G247700 Sobic001G535900--Sobic001G297800 Sobic001G535900--Sobic002G028100 Sobic001G535900--Sobic008G103066 Sobic009G245750 Sobic009G245750 Sobic001G535900--Sobic009G245750 Sobic001G253501 Sobic001G253501 Sobic001G535900--Sobic001G253501
Octagon: transcription factors


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