Gene annotation
Transcriptome id Sobic.002G260800.1
Synonym SbERF24, Sb02g029550,ethylene response factor 24
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
Not investigated (PubMedID : 23766026)
AP2 domain containing protein, expressed
UniProt C5X5B3
Pfam PF00847
Panther DB PTHR31190
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT5G61890 : Integrase-type DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os06g09390.1 : AP2 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a005317 , Zm00025a000950 , Zm00025a037299 , Zm00025a052430 , Zm00025a033098 , Zm00025a024332 , Zm00025a047609 , Zm00025a036079
Brachypodium KQK23284 , KQJ92086
Barley HORVU2Hr1G018830.1 , HORVU2Hr1G018830.2 , HORVU7Hr1G055290.34 , HORVU7Hr1G055290.32 , HORVU7Hr1G055290.33 , HORVU7Hr1G055290.30 , HORVU7Hr1G055290.31 , HORVU4Hr1G077310.1 , HORVU4Hr1G077310.2 , HORVU4Hr1G077310.3 , HORVU4Hr1G077310.4 , HORVU4Hr1G077310.7 , HORVU4Hr1G077310.8 , HORVU4Hr1G077310.5 , HORVU1Hr1G082310.1
Wheat TraesCS4B02G299500 , TraesCS4B02G299400 , TraesCS7B02G162100 , TraesCS5A02G314600 , TraesCS2A02G109800 , TraesCS7D02G265000 , TraesCS7A02G264100 , TraesCS4D02G298400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G437300 sulfotransferase domain containing protein, expressed -
2 Sobic.002G046600 CAF1 family ribonuclease containing protein, putative, expressed K12581: CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
3 Sobic.001G488200 aminotransferase, putative, expressed K00827: alanine-glyoxylate transaminase / (R)-3-amino-2-methylpropionate-pyruvate transaminase
4 Sobic.002G240800 - -
5 Sobic.006G244500 nuclease PA3, putative, expressed -
6 Sobic.004G067900 expressed protein -
7 Sobic.006G170400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.003G002501 - -
9 Sobic.004G225800 GEM, putative, expressed -
10 Sobic.006G206500 60S ribosomal protein L7, putative, expressed -
11 Sobic.002G308400 "MYB transcription factor(Ortholog in rice:Huang et al., 2012)"(PubMedID : 31659858)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
12 Sobic.007G097700 DUF593 domain containing protein, expressed -
13 Sobic.003G421900 glycosyl hydrolases family 17, putative, expressed -
14 Sobic.006G066600 DNA-binding protein S1FA, putative, expressed -
15 Sobic.003G062200 transcription factor HBP-1b, putative, expressed -
16 Sobic.004G085700 expressed protein -
17 Sobic.007G034600 U box protein 8, putative, expressed -
18 Sobic.006G151001 - -
19 Sobic.009G009800 expressed protein -
20 Sobic.001G191800 harpin-induced protein 1 domain containing protein, expressed -


Gene co-expression network
sample Sobic002G260800 Sobic002G260800 Sobic003G437300 Sobic003G437300 Sobic002G260800--Sobic003G437300 Sobic002G046600 Sobic002G046600 Sobic002G260800--Sobic002G046600 Sobic001G488200 Sobic001G488200 Sobic002G260800--Sobic001G488200 Sobic002G240800 Sobic002G240800 Sobic002G260800--Sobic002G240800 Sobic006G244500 Sobic006G244500 Sobic002G260800--Sobic006G244500 Sobic004G067900 Sobic004G067900 Sobic002G260800--Sobic004G067900 Sobic006G170400 Sobic006G170400 Sobic002G260800--Sobic006G170400 Sobic003G002501 Sobic003G002501 Sobic002G260800--Sobic003G002501 Sobic004G225800 Sobic004G225800 Sobic002G260800--Sobic004G225800 Sobic003G437300--Sobic006G244500 Sobic003G062200 Sobic003G062200 Sobic003G437300--Sobic003G062200 Sobic009G009800 Sobic009G009800 Sobic003G437300--Sobic009G009800 Sobic006G028000 Sobic006G028000 Sobic003G437300--Sobic006G028000 Sobic008G037000 Sobic008G037000 Sobic003G437300--Sobic008G037000 Sobic001G277800 Sobic001G277800 Sobic003G437300--Sobic001G277800 Sobic006G082200 Sobic006G082200 Sobic003G437300--Sobic006G082200 Sobic007G194100 Sobic007G194100 Sobic003G437300--Sobic007G194100 Sobic009G082100 Sobic009G082100 Sobic003G437300--Sobic009G082100 Sobic002G236900 Sobic002G236900 Sobic002G046600--Sobic002G236900 Sobic002G046600--Sobic002G260800 Sobic002G046600--Sobic006G244500 Sobic002G046600--Sobic001G488200 Sobic002G046600--Sobic003G062200 Sobic002G046600--Sobic009G009800 Sobic002G401566 Sobic002G401566 Sobic002G046600--Sobic002G401566 Sobic002G046600--Sobic008G037000 Sobic002G046600--Sobic003G002501 Sobic001G488200--Sobic006G244500 Sobic006G151001 Sobic006G151001 Sobic001G488200--Sobic006G151001 Sobic004G028800 Sobic004G028800 Sobic001G488200--Sobic004G028800 Sobic001G488200--Sobic009G009800 Sobic001G488200--Sobic003G062200 Sobic006G206500 Sobic006G206500 Sobic001G488200--Sobic006G206500 Sobic005G158901 Sobic005G158901 Sobic001G488200--Sobic005G158901 Sobic003G421900 Sobic003G421900 Sobic001G488200--Sobic003G421900 Sobic006G066600 Sobic006G066600 Sobic001G488200--Sobic006G066600 Sobic002G240800--Sobic003G421900 Sobic002G240800--Sobic004G067900 Sobic002G240800--Sobic003G062200 Sobic001G368900 Sobic001G368900 Sobic002G240800--Sobic001G368900 Sobic002G240800--Sobic006G244500 Sobic006G133000 Sobic006G133000 Sobic002G240800--Sobic006G133000 Sobic006G096200 Sobic006G096200 Sobic002G240800--Sobic006G096200 Sobic007G182500 Sobic007G182500 Sobic002G240800--Sobic007G182500 Sobic002G240800--Sobic006G151001 Sobic006G244500--Sobic009G009800 Sobic006G244500--Sobic003G062200 Sobic003G376000 Sobic003G376000 Sobic006G244500--Sobic003G376000 Sobic006G244500--Sobic005G158901 Sobic006G244500--Sobic006G151001 Sobic006G244500--Sobic008G037000 Sobic006G244500--Sobic006G096200 Sobic010G031600 Sobic010G031600 Sobic006G244500--Sobic010G031600 Sobic006G244500--Sobic001G277800 Sobic002G308400 Sobic002G308400 Sobic004G067900--Sobic002G308400 Sobic004G067900--Sobic006G244500 Sobic004G067900--Sobic007G194100 Sobic004G067900--Sobic003G062200 Sobic003G295000 Sobic003G295000 Sobic004G067900--Sobic003G295000 Sobic004G067900--Sobic006G066600 Sobic004G067900--Sobic002G240800 Sobic007G034600 Sobic007G034600 Sobic004G067900--Sobic007G034600 Sobic001G106400 Sobic001G106400 Sobic004G067900--Sobic001G106400 Sobic006G170400--Sobic006G066600 Sobic002G419500 Sobic002G419500 Sobic006G170400--Sobic002G419500 Sobic006G170400--Sobic002G260800 Sobic001G191800 Sobic001G191800 Sobic006G170400--Sobic001G191800 Sobic006G170400--Sobic004G067900 Sobic006G170400--Sobic001G106400 Sobic006G170400--Sobic002G308400 Sobic006G096300 Sobic006G096300 Sobic006G170400--Sobic006G096300 Sobic002G290500 Sobic002G290500 Sobic006G170400--Sobic002G290500 Sobic002G044100 Sobic002G044100 Sobic003G002501--Sobic002G044100 Sobic006G221700 Sobic006G221700 Sobic003G002501--Sobic006G221700 Sobic003G316350 Sobic003G316350 Sobic003G002501--Sobic003G316350 Sobic003G002501--Sobic002G046600 Sobic003G067700 Sobic003G067700 Sobic003G002501--Sobic003G067700 Sobic003G002501--Sobic002G260800 Sobic003G002501--Sobic007G034600 Sobic003G002501--Sobic003G062200 Sobic003G002501--Sobic006G151001 Sobic004G225800--Sobic002G419500 Sobic004G225800--Sobic001G488200 Sobic004G225800--Sobic006G244500 Sobic004G225800--Sobic003G062200 Sobic004G225800--Sobic004G067900 Sobic002G393600 Sobic002G393600 Sobic004G225800--Sobic002G393600 Sobic004G225800--Sobic002G290500 Sobic004G225800--Sobic004G028800 Sobic007G097700 Sobic007G097700 Sobic004G225800--Sobic007G097700
Octagon: transcription factors


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