Gene annotation
Transcriptome id Sobic.002G046600.1
Synonym Sb02g003950
Functional annotation CAF1 family ribonuclease containing protein, putative, expressed
UniProt C5XAC6
Pfam PF04857
Panther DB PTHR10797 PTHR10797:SF13
NCBI CDD KOG0304; mRNA deadenylase subunit
KEGG Orthology K12581; CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
Gene Ontology GO:0005634; nucleus


Orthologs (automatic annotation)
TAIR AT3G44260 : Polynucleotidyl transferase, ribonuclease H-like superfamily protein
RAP-DB (Rice) LOC_Os07g07430.1 : CAF1 family ribonuclease containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a016101
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G236900 - -
2 Sobic.002G260800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
3 Sobic.006G244500 nuclease PA3, putative, expressed -
4 Sobic.001G488200 aminotransferase, putative, expressed K00827: alanine-glyoxylate transaminase / (R)-3-amino-2-methylpropionate-pyruvate transaminase
5 Sobic.003G062200 transcription factor HBP-1b, putative, expressed -
6 Sobic.009G009800 expressed protein -
7 Sobic.002G401566 - -
8 Sobic.008G037000 Ser/Thr protein phosphatase family protein, putative, expressed -
9 Sobic.003G002501 - -
10 Sobic.006G206500 60S ribosomal protein L7, putative, expressed -
11 Sobic.005G158901 - -
12 Sobic.003G376000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid transporter, putative, expressed -
13 Sobic.009G025100 transporter, putative, expressed -
14 Sobic.004G318400 MTD1, putative, expressed -
15 Sobic.006G066600 DNA-binding protein S1FA, putative, expressed -
16 Sobic.006G151001 - -
17 Sobic.010G037200 SAM dependent carboxyl methyltransferase, putative, expressed -
18 Sobic.002G419500 HAD superfamily phosphatase, putative, expressed -
19 Sobic.004G274500 OsFBD8 - F-box and FBD domain containing protein, expressed -
20 Sobic.004G250900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@aldehyde dehydrogenase, putative, expressed K00128: aldehyde dehydrogenase (NAD+)


Gene co-expression network
sample Sobic002G046600 Sobic002G046600 Sobic002G236900 Sobic002G236900 Sobic002G046600--Sobic002G236900 Sobic002G260800 Sobic002G260800 Sobic002G046600--Sobic002G260800 Sobic006G244500 Sobic006G244500 Sobic002G046600--Sobic006G244500 Sobic001G488200 Sobic001G488200 Sobic002G046600--Sobic001G488200 Sobic003G062200 Sobic003G062200 Sobic002G046600--Sobic003G062200 Sobic009G009800 Sobic009G009800 Sobic002G046600--Sobic009G009800 Sobic002G401566 Sobic002G401566 Sobic002G046600--Sobic002G401566 Sobic008G037000 Sobic008G037000 Sobic002G046600--Sobic008G037000 Sobic003G002501 Sobic003G002501 Sobic002G046600--Sobic003G002501 Sobic002G236900--Sobic002G046600 Sobic001G191800 Sobic001G191800 Sobic002G236900--Sobic001G191800 Sobic004G102900 Sobic004G102900 Sobic002G236900--Sobic004G102900 Sobic002G419500 Sobic002G419500 Sobic002G236900--Sobic002G419500 Sobic009G170800 Sobic009G170800 Sobic002G236900--Sobic009G170800 Sobic002G236900--Sobic002G401566 Sobic004G318400 Sobic004G318400 Sobic002G236900--Sobic004G318400 Sobic002G308400 Sobic002G308400 Sobic002G236900--Sobic002G308400 Sobic007G194100 Sobic007G194100 Sobic002G236900--Sobic007G194100 Sobic003G437300 Sobic003G437300 Sobic002G260800--Sobic003G437300 Sobic002G260800--Sobic002G046600 Sobic002G260800--Sobic001G488200 Sobic002G240800 Sobic002G240800 Sobic002G260800--Sobic002G240800 Sobic002G260800--Sobic006G244500 Sobic004G067900 Sobic004G067900 Sobic002G260800--Sobic004G067900 Sobic006G170400 Sobic006G170400 Sobic002G260800--Sobic006G170400 Sobic002G260800--Sobic003G002501 Sobic004G225800 Sobic004G225800 Sobic002G260800--Sobic004G225800 Sobic006G244500--Sobic009G009800 Sobic006G244500--Sobic003G062200 Sobic003G376000 Sobic003G376000 Sobic006G244500--Sobic003G376000 Sobic005G158901 Sobic005G158901 Sobic006G244500--Sobic005G158901 Sobic006G151001 Sobic006G151001 Sobic006G244500--Sobic006G151001 Sobic006G244500--Sobic008G037000 Sobic006G096200 Sobic006G096200 Sobic006G244500--Sobic006G096200 Sobic010G031600 Sobic010G031600 Sobic006G244500--Sobic010G031600 Sobic001G277800 Sobic001G277800 Sobic006G244500--Sobic001G277800 Sobic001G488200--Sobic006G244500 Sobic001G488200--Sobic006G151001 Sobic004G028800 Sobic004G028800 Sobic001G488200--Sobic004G028800 Sobic001G488200--Sobic009G009800 Sobic001G488200--Sobic003G062200 Sobic006G206500 Sobic006G206500 Sobic001G488200--Sobic006G206500 Sobic001G488200--Sobic005G158901 Sobic003G421900 Sobic003G421900 Sobic001G488200--Sobic003G421900 Sobic006G066600 Sobic006G066600 Sobic001G488200--Sobic006G066600 Sobic003G062200--Sobic006G244500 Sobic003G062200--Sobic009G009800 Sobic003G062200--Sobic003G376000 Sobic003G062200--Sobic008G037000 Sobic003G062200--Sobic006G151001 Sobic003G062200--Sobic006G096200 Sobic003G062200--Sobic010G031600 Sobic010G136300 Sobic010G136300 Sobic003G062200--Sobic010G136300 Sobic009G041100 Sobic009G041100 Sobic003G062200--Sobic009G041100 Sobic009G009800--Sobic006G244500 Sobic009G009800--Sobic010G031600 Sobic009G009800--Sobic003G376000 Sobic009G009800--Sobic001G277800 Sobic009G009800--Sobic010G136300 Sobic009G009800--Sobic005G158901 Sobic009G009800--Sobic008G037000 Sobic007G049400 Sobic007G049400 Sobic009G009800--Sobic007G049400 Sobic005G112066 Sobic005G112066 Sobic009G009800--Sobic005G112066 Sobic002G401566--Sobic002G046600 Sobic002G325100 Sobic002G325100 Sobic002G401566--Sobic002G325100 Sobic002G401566--Sobic008G037000 Sobic002G401566--Sobic001G488200 Sobic002G401566--Sobic003G062200 Sobic002G401566--Sobic006G151001 Sobic002G401566--Sobic002G236900 Sobic007G097700 Sobic007G097700 Sobic002G401566--Sobic007G097700 Sobic002G401566--Sobic002G260800 Sobic008G037000--Sobic010G136300 Sobic008G037000--Sobic003G376000 Sobic008G037000--Sobic010G031600 Sobic008G037000--Sobic001G277800 Sobic008G037000--Sobic009G009800 Sobic008G037000--Sobic009G041100 Sobic008G037000--Sobic006G096200 Sobic007G156300 Sobic007G156300 Sobic008G037000--Sobic007G156300 Sobic006G031600 Sobic006G031600 Sobic008G037000--Sobic006G031600 Sobic002G044100 Sobic002G044100 Sobic003G002501--Sobic002G044100 Sobic006G221700 Sobic006G221700 Sobic003G002501--Sobic006G221700 Sobic003G316350 Sobic003G316350 Sobic003G002501--Sobic003G316350 Sobic003G002501--Sobic002G046600 Sobic003G067700 Sobic003G067700 Sobic003G002501--Sobic003G067700 Sobic003G002501--Sobic002G260800 Sobic007G034600 Sobic007G034600 Sobic003G002501--Sobic007G034600 Sobic003G002501--Sobic003G062200 Sobic003G002501--Sobic006G151001
Octagon: transcription factors


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