Gene annotation
Transcriptome id Sobic.002G419500.1,Sobic.002G419500.2,Sobic.002G419500.3
Synonym Sb02g043120
Functional annotation HAD superfamily phosphatase, putative, expressed
UniProt A0A1B6QGA2 , A0A1W0W7V2
Pfam PF03767
Panther DB PTHR31284 PTHR31284:SF11
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003993; acid phosphatase activity


Orthologs (automatic annotation)
TAIR AT2G38600 : HAD superfamily, subfamily IIIB acid phosphatase
RAP-DB (Rice) LOC_Os03g21480.1 : HAD superfamily phosphatase, putative, expressed
MaizeGDB (Corn) Zm00025a002325
Brachypodium PNT74560
Barley HORVU0Hr1G005890.2 , HORVU0Hr1G005890.3 , HORVU0Hr1G005890.1 , HORVU0Hr1G005890.4 , HORVU0Hr1G005890.5
Wheat TraesCS2A02G104000 , TraesCS2D02G103700 , TraesCS2A02G103800
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G290500 armadillo/beta-catenin repeat protein-related, putative, expressed -
2 Sobic.004G225800 GEM, putative, expressed -
3 Sobic.007G074200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@- -
4 Sobic.009G170800 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
5 Sobic.004G102900 FUWA(Ortholog in rice:Chen 2015)(PubMedID : 31659879)@"encodes an NHL domain-containing protein regulating panicle architecture, grain shape and grain weight"(PubMedID : 26043067)@NHL repeat-containing protein, putative, expressed -
6 Sobic.006G066600 DNA-binding protein S1FA, putative, expressed -
7 Sobic.004G067900 expressed protein -
8 Sobic.004G056201 - -
9 Sobic.002G308400 "MYB transcription factor(Ortholog in rice:Huang et al., 2012)"(PubMedID : 31659858)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
10 Sobic.003G403400 zinc finger, C3HC4 type domain containing protein, expressed -
11 Sobic.002G393600 GDSL-like lipase/acylhydrolase, putative, expressed -
12 Sobic.002G338250 - -
13 Sobic.006G170400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.006G244500 nuclease PA3, putative, expressed -
15 Sobic.001G191800 harpin-induced protein 1 domain containing protein, expressed -
16 Sobic.008G111500 membrane associated DUF588 domain containing protein, putative, expressed -
17 Sobic.004G318400 MTD1, putative, expressed -
18 Sobic.001G488200 aminotransferase, putative, expressed K00827: alanine-glyoxylate transaminase / (R)-3-amino-2-methylpropionate-pyruvate transaminase
19 Sobic.002G325100 expressed protein -
20 Sobic.004G117600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@WRKY39, expressed -


Gene co-expression network
sample Sobic002G419500 Sobic002G419500 Sobic002G290500 Sobic002G290500 Sobic002G419500--Sobic002G290500 Sobic004G225800 Sobic004G225800 Sobic002G419500--Sobic004G225800 Sobic007G074200 Sobic007G074200 Sobic002G419500--Sobic007G074200 Sobic009G170800 Sobic009G170800 Sobic002G419500--Sobic009G170800 Sobic004G102900 Sobic004G102900 Sobic002G419500--Sobic004G102900 Sobic006G066600 Sobic006G066600 Sobic002G419500--Sobic006G066600 Sobic004G067900 Sobic004G067900 Sobic002G419500--Sobic004G067900 Sobic004G056201 Sobic004G056201 Sobic002G419500--Sobic004G056201 Sobic002G308400 Sobic002G308400 Sobic002G419500--Sobic002G308400 Sobic004G117600 Sobic004G117600 Sobic002G290500--Sobic004G117600 Sobic002G290500--Sobic002G419500 Sobic008G111500 Sobic008G111500 Sobic002G290500--Sobic008G111500 Sobic008G082200 Sobic008G082200 Sobic002G290500--Sobic008G082200 Sobic002G338250 Sobic002G338250 Sobic002G290500--Sobic002G338250 Sobic001G365100 Sobic001G365100 Sobic002G290500--Sobic001G365100 Sobic010G259500 Sobic010G259500 Sobic002G290500--Sobic010G259500 Sobic003G191500 Sobic003G191500 Sobic002G290500--Sobic003G191500 Sobic001G447100 Sobic001G447100 Sobic002G290500--Sobic001G447100 Sobic004G225800--Sobic002G419500 Sobic001G488200 Sobic001G488200 Sobic004G225800--Sobic001G488200 Sobic006G244500 Sobic006G244500 Sobic004G225800--Sobic006G244500 Sobic003G062200 Sobic003G062200 Sobic004G225800--Sobic003G062200 Sobic004G225800--Sobic004G067900 Sobic002G393600 Sobic002G393600 Sobic004G225800--Sobic002G393600 Sobic004G225800--Sobic002G290500 Sobic004G028800 Sobic004G028800 Sobic004G225800--Sobic004G028800 Sobic007G097700 Sobic007G097700 Sobic004G225800--Sobic007G097700 Sobic007G074200--Sobic008G111500 Sobic007G074200--Sobic002G393600 Sobic007G074200--Sobic002G338250 Sobic007G074200--Sobic001G447100 Sobic007G074200--Sobic004G117600 Sobic009G131400 Sobic009G131400 Sobic007G074200--Sobic009G131400 Sobic003G146400 Sobic003G146400 Sobic007G074200--Sobic003G146400 Sobic003G349700 Sobic003G349700 Sobic007G074200--Sobic003G349700 Sobic009G154200 Sobic009G154200 Sobic007G074200--Sobic009G154200 Sobic009G170800--Sobic004G067900 Sobic009G216800 Sobic009G216800 Sobic009G170800--Sobic009G216800 Sobic009G170800--Sobic002G308400 Sobic010G196800 Sobic010G196800 Sobic009G170800--Sobic010G196800 Sobic009G170800--Sobic002G419500 Sobic004G318400 Sobic004G318400 Sobic009G170800--Sobic004G318400 Sobic009G170800--Sobic006G066600 Sobic001G106400 Sobic001G106400 Sobic009G170800--Sobic001G106400 Sobic009G170800--Sobic004G102900 Sobic004G102900--Sobic004G318400 Sobic007G208200 Sobic007G208200 Sobic004G102900--Sobic007G208200 Sobic001G050900 Sobic001G050900 Sobic004G102900--Sobic001G050900 Sobic001G154400 Sobic001G154400 Sobic004G102900--Sobic001G154400 Sobic004G102900--Sobic006G066600 Sobic002G240700 Sobic002G240700 Sobic004G102900--Sobic002G240700 Sobic003G304500 Sobic003G304500 Sobic004G102900--Sobic003G304500 Sobic007G194100 Sobic007G194100 Sobic004G102900--Sobic007G194100 Sobic002G113500 Sobic002G113500 Sobic004G102900--Sobic002G113500 Sobic006G066600--Sobic004G318400 Sobic006G066600--Sobic004G067900 Sobic006G066600--Sobic004G102900 Sobic006G066600--Sobic006G244500 Sobic007G018000 Sobic007G018000 Sobic006G066600--Sobic007G018000 Sobic006G066600--Sobic004G028800 Sobic006G066600--Sobic001G488200 Sobic004G155300 Sobic004G155300 Sobic006G066600--Sobic004G155300 Sobic006G066600--Sobic002G308400 Sobic004G067900--Sobic002G308400 Sobic004G067900--Sobic006G244500 Sobic004G067900--Sobic007G194100 Sobic004G067900--Sobic003G062200 Sobic003G295000 Sobic003G295000 Sobic004G067900--Sobic003G295000 Sobic004G067900--Sobic006G066600 Sobic002G240800 Sobic002G240800 Sobic004G067900--Sobic002G240800 Sobic007G034600 Sobic007G034600 Sobic004G067900--Sobic007G034600 Sobic004G067900--Sobic001G106400 Sobic004G056201--Sobic002G419500 Sobic004G056201--Sobic002G290500 Sobic004G056201--Sobic002G338250 Sobic004G056201--Sobic007G074200 Sobic004G056201--Sobic004G117600 Sobic003G088400 Sobic003G088400 Sobic004G056201--Sobic003G088400 Sobic004G056201--Sobic004G225800 Sobic004G056201--Sobic007G018000 Sobic004G056201--Sobic002G393600 Sobic002G308400--Sobic004G067900 Sobic002G308400--Sobic007G194100 Sobic002G308400--Sobic006G244500 Sobic002G308400--Sobic001G106400 Sobic002G308400--Sobic003G295000 Sobic002G308400--Sobic002G240700 Sobic010G037200 Sobic010G037200 Sobic002G308400--Sobic010G037200 Sobic001G442200 Sobic001G442200 Sobic002G308400--Sobic001G442200 Sobic002G308400--Sobic006G066600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.