Gene annotation
Transcriptome id Sobic.004G117600.1
Synonym WRKY27, Sb04g009800, ATWRKY27
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
WRKY39, expressed
UniProt C5XZJ0
Pfam PF03106
Panther DB PTHR32096 PTHR32096:SF31
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT4G01250 : WRKY family transcription factor
RAP-DB (Rice) LOC_Os02g16540.1 : WRKY39, expressed
MaizeGDB (Corn) Zm00025a019876 , Zm00025a036725 , Zm00025a056959 , Zm00025a027709 , Zm00025a034393
Brachypodium KQJ94313 , KQK09586 , KQK09741 , KQK09740
Barley HORVU5Hr1G106570.10 , HORVU1Hr1G092360.1 , HORVU1Hr1G092360.2 , HORVU5Hr1G106570.8 , HORVU4Hr1G082550.2 , HORVU4Hr1G082550.1 , HORVU1Hr1G051260.1 , HORVU1Hr1G051260.3 , HORVU1Hr1G051260.2 , HORVU3Hr1G071750.5 , HORVU3Hr1G071750.4 , HORVU3Hr1G071750.7 , HORVU3Hr1G071750.6 , HORVU3Hr1G071750.1 , HORVU3Hr1G071750.3 , HORVU5Hr1G106570.2 , HORVU5Hr1G106570.3 , HORVU5Hr1G106570.6 , HORVU5Hr1G106570.4 , HORVU5Hr1G106570.5
Wheat TraesCS3A02G289700 , TraesCS3A02G289700 , TraesCS3B02G324400 , TraesCS5A02G443600 , TraesCS3D02G289500 , TraesCS4D02G320200 , TraesCS3A02G281900 , TraesCS5A02G495800 , TraesCS1B02G455000 , TraesCS1D02G431600 , TraesCS5D02G451000 , TraesCS3B02G315600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G074200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@- -
2 Sobic.002G338250 - -
3 Sobic.009G154200 MYB family transcription factor, putative, expressed -
4 Sobic.008G111500 membrane associated DUF588 domain containing protein, putative, expressed -
5 Sobic.002G393600 GDSL-like lipase/acylhydrolase, putative, expressed -
6 Sobic.009G159400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@universal stress protein domain containing protein, putative, expressed -
7 Sobic.004G301300 zinc finger, C3HC4 type domain containing protein, expressed -
8 Sobic.002G239200 zinc finger, C3HC4 type domain containing protein, expressed K16285: RING/U-box domain-containing protein
9 Sobic.006G136800 "shikimate hydroxycinnamoyl transferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed K13065: E2.3.1.133, shikimate O-hydroxycinnamoyltransferase
10 Sobic.003G146400 anther-specific protein SF18 precursor, putative, expressed -
11 Sobic.004G340900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsFBX70 - F-box domain containing protein, expressed -
12 Sobic.003G041200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.004G306300 expressed protein -
14 Sobic.001G100600 expressed protein -
15 Sobic.001G447100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ATP8, putative, expressed -
16 Sobic.009G216800 polyprenyl synthetase, putative, expressed K00787: farnesyl diphosphate synthase
17 Sobic.003G063200 uncharacterized Cys-rich domain containing protein, putative, expressed -
18 Sobic.006G100200 zinc finger, C3HC4 type domain containing protein, expressed -
19 Sobic.006G158266 - -
20 Sobic.009G179500 expressed protein -


Gene co-expression network
sample Sobic004G117600 Sobic004G117600 Sobic007G074200 Sobic007G074200 Sobic004G117600--Sobic007G074200 Sobic002G338250 Sobic002G338250 Sobic004G117600--Sobic002G338250 Sobic009G154200 Sobic009G154200 Sobic004G117600--Sobic009G154200 Sobic008G111500 Sobic008G111500 Sobic004G117600--Sobic008G111500 Sobic002G393600 Sobic002G393600 Sobic004G117600--Sobic002G393600 Sobic009G159400 Sobic009G159400 Sobic004G117600--Sobic009G159400 Sobic004G301300 Sobic004G301300 Sobic004G117600--Sobic004G301300 Sobic002G239200 Sobic002G239200 Sobic004G117600--Sobic002G239200 Sobic006G136800 Sobic006G136800 Sobic004G117600--Sobic006G136800 Sobic007G074200--Sobic008G111500 Sobic007G074200--Sobic002G393600 Sobic007G074200--Sobic002G338250 Sobic001G447100 Sobic001G447100 Sobic007G074200--Sobic001G447100 Sobic007G074200--Sobic004G117600 Sobic009G131400 Sobic009G131400 Sobic007G074200--Sobic009G131400 Sobic003G146400 Sobic003G146400 Sobic007G074200--Sobic003G146400 Sobic003G349700 Sobic003G349700 Sobic007G074200--Sobic003G349700 Sobic007G074200--Sobic009G154200 Sobic002G338250--Sobic007G074200 Sobic002G338250--Sobic004G117600 Sobic002G338250--Sobic009G154200 Sobic002G338250--Sobic002G393600 Sobic002G338250--Sobic008G111500 Sobic001G389900 Sobic001G389900 Sobic002G338250--Sobic001G389900 Sobic002G338250--Sobic003G349700 Sobic002G338250--Sobic001G447100 Sobic002G338250--Sobic006G136800 Sobic007G008100 Sobic007G008100 Sobic009G154200--Sobic007G008100 Sobic003G364300 Sobic003G364300 Sobic009G154200--Sobic003G364300 Sobic004G336500 Sobic004G336500 Sobic009G154200--Sobic004G336500 Sobic010G156500 Sobic010G156500 Sobic009G154200--Sobic010G156500 Sobic003G382600 Sobic003G382600 Sobic009G154200--Sobic003G382600 Sobic009G231000 Sobic009G231000 Sobic009G154200--Sobic009G231000 Sobic001G279500 Sobic001G279500 Sobic009G154200--Sobic001G279500 Sobic003G345100 Sobic003G345100 Sobic009G154200--Sobic003G345100 Sobic001G112200 Sobic001G112200 Sobic009G154200--Sobic001G112200 Sobic008G111500--Sobic007G074200 Sobic008G111500--Sobic009G131400 Sobic008G111500--Sobic001G447100 Sobic006G100200 Sobic006G100200 Sobic008G111500--Sobic006G100200 Sobic008G111500--Sobic003G349700 Sobic008G111500--Sobic004G117600 Sobic008G111500--Sobic002G338250 Sobic001G100600 Sobic001G100600 Sobic008G111500--Sobic001G100600 Sobic008G111500--Sobic002G393600 Sobic002G393600--Sobic007G074200 Sobic002G393600--Sobic002G338250 Sobic002G393600--Sobic004G117600 Sobic002G393600--Sobic008G111500 Sobic001G488000 Sobic001G488000 Sobic002G393600--Sobic001G488000 Sobic002G393600--Sobic009G131400 Sobic002G393600--Sobic003G146400 Sobic006G198800 Sobic006G198800 Sobic002G393600--Sobic006G198800 Sobic002G393600--Sobic006G136800 Sobic001G038900 Sobic001G038900 Sobic009G159400--Sobic001G038900 Sobic001G435000 Sobic001G435000 Sobic009G159400--Sobic001G435000 Sobic004G321300 Sobic004G321300 Sobic009G159400--Sobic004G321300 Sobic009G159400--Sobic003G345100 Sobic004G208700 Sobic004G208700 Sobic009G159400--Sobic004G208700 Sobic001G140900 Sobic001G140900 Sobic009G159400--Sobic001G140900 Sobic008G050600 Sobic008G050600 Sobic009G159400--Sobic008G050600 Sobic010G259600 Sobic010G259600 Sobic009G159400--Sobic010G259600 Sobic004G237800 Sobic004G237800 Sobic009G159400--Sobic004G237800 Sobic004G203700 Sobic004G203700 Sobic004G301300--Sobic004G203700 Sobic003G027400 Sobic003G027400 Sobic004G301300--Sobic003G027400 Sobic001G295200 Sobic001G295200 Sobic004G301300--Sobic001G295200 Sobic005G107900 Sobic005G107900 Sobic004G301300--Sobic005G107900 Sobic004G301300--Sobic007G008100 Sobic004G301300--Sobic009G154200 Sobic001G169500 Sobic001G169500 Sobic004G301300--Sobic001G169500 Sobic004G301300--Sobic009G159400 Sobic002G329800 Sobic002G329800 Sobic004G301300--Sobic002G329800 Sobic006G165100 Sobic006G165100 Sobic002G239200--Sobic006G165100 Sobic001G052300 Sobic001G052300 Sobic002G239200--Sobic001G052300 Sobic003G063200 Sobic003G063200 Sobic002G239200--Sobic003G063200 Sobic002G359300 Sobic002G359300 Sobic002G239200--Sobic002G359300 Sobic005G028700 Sobic005G028700 Sobic002G239200--Sobic005G028700 Sobic004G247200 Sobic004G247200 Sobic002G239200--Sobic004G247200 Sobic002G239200--Sobic004G117600 Sobic009G255500 Sobic009G255500 Sobic002G239200--Sobic009G255500 Sobic009G179500 Sobic009G179500 Sobic002G239200--Sobic009G179500 Sobic004G046200 Sobic004G046200 Sobic006G136800--Sobic004G046200 Sobic002G081600 Sobic002G081600 Sobic006G136800--Sobic002G081600 Sobic003G436700 Sobic003G436700 Sobic006G136800--Sobic003G436700 Sobic006G136800--Sobic001G295200 Sobic001G036900 Sobic001G036900 Sobic006G136800--Sobic001G036900 Sobic004G205100 Sobic004G205100 Sobic006G136800--Sobic004G205100 Sobic004G340900 Sobic004G340900 Sobic006G136800--Sobic004G340900 Sobic001G389000 Sobic001G389000 Sobic006G136800--Sobic001G389000 Sobic001G500000 Sobic001G500000 Sobic006G136800--Sobic001G500000
Octagon: transcription factors


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