Gene annotation
Transcriptome id Sobic.001G100600.1
Synonym Sb01g008990
Functional annotation expressed protein
UniProt C5WLW5
Pfam -
Panther DB PTHR33983 PTHR33983:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G57450 : -
RAP-DB (Rice) LOC_Os03g52410.1 : expressed protein
MaizeGDB (Corn) Zm00025a016868
Brachypodium KQK13350
Barley HORVU4Hr1G010770.5 , HORVU4Hr1G010770.4 , HORVU4Hr1G010770.7 , HORVU4Hr1G010770.6 , HORVU4Hr1G010770.1 , HORVU4Hr1G010770.3 , HORVU4Hr1G010770.2
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.001G100600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G229800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cytokinin-O-glucosyltransferase 2, putative, expressed -
2 Sobic.002G336600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@nucleoside transporter, putative, expressed K15014: SLC29A1_2_3, solute carrier family 29 (equilibrative nucleoside transporter), member 1/2/3
3 Sobic.003G349700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ZOS1-15 - C2H2 zinc finger protein, expressed -
4 Sobic.002G192000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@AN1-like zinc finger domain containing protein, expressed -
5 Sobic.002G140400 plastocyanin-like domain containing protein, putative, expressed -
6 Sobic.007G036900 triacylglycerol lipase like protein, putative, expressed -
7 Sobic.007G074000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@- -
8 Sobic.004G141200 cytochrome P450, putative, expressed K00487: trans-cinnamate 4-monooxygenase
9 Sobic.001G435000 gibberellin receptor GID1L2, putative, expressed -
10 Sobic.001G079300 helix-loop-helix DNA-binding domain containing protein, expressed -
11 Sobic.003G369100 AP2 domain containing protein, expressed -
12 Sobic.004G004500 lactate/malate dehydrogenase, putative, expressed K00016: LDH, L-lactate dehydrogenase
13 Sobic.001G481100 DUF581 domain containing protein, expressed -
14 Sobic.002G263400 expressed protein -
15 Sobic.006G207100 expressed protein -
16 Sobic.004G208700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CHIT1 - Chitinase family protein precursor, expressed K01183: chitinase
17 Sobic.001G256700 cystathionine gamma-synthase, putative, expressed K01739: cystathionine gamma-synthase
18 Sobic.001G018300 cytochrome P450 71E1, putative, expressed -
19 Sobic.005G099000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed -
20 Sobic.001G108200 expressed protein -


Gene co-expression network
sample Sobic001G100600 Sobic001G100600 Sobic004G229800 Sobic004G229800 Sobic001G100600--Sobic004G229800 Sobic002G336600 Sobic002G336600 Sobic001G100600--Sobic002G336600 Sobic003G349700 Sobic003G349700 Sobic001G100600--Sobic003G349700 Sobic002G192000 Sobic002G192000 Sobic001G100600--Sobic002G192000 Sobic002G140400 Sobic002G140400 Sobic001G100600--Sobic002G140400 Sobic007G036900 Sobic007G036900 Sobic001G100600--Sobic007G036900 Sobic007G074000 Sobic007G074000 Sobic001G100600--Sobic007G074000 Sobic004G141200 Sobic004G141200 Sobic001G100600--Sobic004G141200 Sobic001G435000 Sobic001G435000 Sobic001G100600--Sobic001G435000 Sobic004G229800--Sobic001G435000 Sobic004G229800--Sobic007G036900 Sobic001G018300 Sobic001G018300 Sobic004G229800--Sobic001G018300 Sobic004G229800--Sobic002G336600 Sobic004G229800--Sobic004G141200 Sobic002G188900 Sobic002G188900 Sobic004G229800--Sobic002G188900 Sobic004G208700 Sobic004G208700 Sobic004G229800--Sobic004G208700 Sobic004G004500 Sobic004G004500 Sobic004G229800--Sobic004G004500 Sobic004G229800--Sobic002G140400 Sobic004G237800 Sobic004G237800 Sobic002G336600--Sobic004G237800 Sobic002G336600--Sobic007G074000 Sobic002G336600--Sobic004G208700 Sobic002G336600--Sobic004G229800 Sobic003G369100 Sobic003G369100 Sobic002G336600--Sobic003G369100 Sobic002G336600--Sobic001G435000 Sobic002G336600--Sobic002G140400 Sobic002G336600--Sobic004G141200 Sobic003G345100 Sobic003G345100 Sobic002G336600--Sobic003G345100 Sobic001G447100 Sobic001G447100 Sobic003G349700--Sobic001G447100 Sobic001G387900 Sobic001G387900 Sobic003G349700--Sobic001G387900 Sobic001G108200 Sobic001G108200 Sobic003G349700--Sobic001G108200 Sobic003G349700--Sobic001G100600 Sobic001G308300 Sobic001G308300 Sobic003G349700--Sobic001G308300 Sobic003G349700--Sobic002G336600 Sobic003G041200 Sobic003G041200 Sobic003G349700--Sobic003G041200 Sobic003G349700--Sobic004G141200 Sobic003G349700--Sobic003G369100 Sobic002G192000--Sobic001G018300 Sobic001G367600 Sobic001G367600 Sobic002G192000--Sobic001G367600 Sobic001G231400 Sobic001G231400 Sobic002G192000--Sobic001G231400 Sobic004G243100 Sobic004G243100 Sobic002G192000--Sobic004G243100 Sobic006G158600 Sobic006G158600 Sobic002G192000--Sobic006G158600 Sobic001G318700 Sobic001G318700 Sobic002G192000--Sobic001G318700 Sobic001G038900 Sobic001G038900 Sobic002G192000--Sobic001G038900 Sobic002G192000--Sobic002G140400 Sobic001G423800 Sobic001G423800 Sobic002G192000--Sobic001G423800 Sobic002G140400--Sobic001G038900 Sobic002G263400 Sobic002G263400 Sobic002G140400--Sobic002G263400 Sobic004G189400 Sobic004G189400 Sobic002G140400--Sobic004G189400 Sobic002G140400--Sobic001G423800 Sobic008G136400 Sobic008G136400 Sobic002G140400--Sobic008G136400 Sobic002G140400--Sobic007G074000 Sobic002G140400--Sobic004G237800 Sobic008G050600 Sobic008G050600 Sobic002G140400--Sobic008G050600 Sobic003G286600 Sobic003G286600 Sobic002G140400--Sobic003G286600 Sobic007G036900--Sobic004G004500 Sobic008G187001 Sobic008G187001 Sobic007G036900--Sobic008G187001 Sobic007G036900--Sobic004G229800 Sobic001G256700 Sobic001G256700 Sobic007G036900--Sobic001G256700 Sobic007G036900--Sobic004G141200 Sobic002G339000 Sobic002G339000 Sobic007G036900--Sobic002G339000 Sobic003G364600 Sobic003G364600 Sobic007G036900--Sobic003G364600 Sobic007G036900--Sobic001G108200 Sobic001G079300 Sobic001G079300 Sobic007G036900--Sobic001G079300 Sobic007G074000--Sobic003G369100 Sobic007G074000--Sobic004G141200 Sobic007G074000--Sobic004G237800 Sobic007G074000--Sobic002G140400 Sobic003G228900 Sobic003G228900 Sobic007G074000--Sobic003G228900 Sobic007G074000--Sobic002G336600 Sobic007G074000--Sobic003G364600 Sobic001G138600 Sobic001G138600 Sobic007G074000--Sobic001G138600 Sobic009G247900 Sobic009G247900 Sobic007G074000--Sobic009G247900 Sobic004G141200--Sobic003G369100 Sobic004G141200--Sobic001G108200 Sobic004G141200--Sobic007G074000 Sobic003G393900 Sobic003G393900 Sobic004G141200--Sobic003G393900 Sobic001G459800 Sobic001G459800 Sobic004G141200--Sobic001G459800 Sobic004G304625 Sobic004G304625 Sobic004G141200--Sobic004G304625 Sobic004G141200--Sobic001G138600 Sobic001G391500 Sobic001G391500 Sobic004G141200--Sobic001G391500 Sobic004G100700 Sobic004G100700 Sobic004G141200--Sobic004G100700 Sobic001G435000--Sobic004G208700 Sobic001G435000--Sobic004G229800 Sobic009G159400 Sobic009G159400 Sobic001G435000--Sobic009G159400 Sobic007G155000 Sobic007G155000 Sobic001G435000--Sobic007G155000 Sobic001G435000--Sobic003G345100 Sobic005G063100 Sobic005G063100 Sobic001G435000--Sobic005G063100 Sobic005G099000 Sobic005G099000 Sobic001G435000--Sobic005G099000 Sobic001G435000--Sobic008G050600 Sobic001G140900 Sobic001G140900 Sobic001G435000--Sobic001G140900
Octagon: transcription factors


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