Gene annotation
Transcriptome id Sobic.006G100200.1
Synonym Sb06g018375
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt A0A1Z5RD43
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF101
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT5G17600 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os04g37740.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a011169 , Zm00025a021602
Brachypodium KQJ82893
Barley HORVU7Hr1G107430.1 , HORVU2Hr1G079170.1
Wheat TraesCS2A02G318300
Populus -


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cDNA sequences
Sobic.006G100200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G111500 membrane associated DUF588 domain containing protein, putative, expressed -
2 Sobic.003G041200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.005G139075 - -
4 Sobic.009G221400 B3 DNA binding domain containing protein, expressed K09287: RAV-like factor
5 Sobic.002G336600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@nucleoside transporter, putative, expressed K15014: SLC29A1_2_3, solute carrier family 29 (equilibrative nucleoside transporter), member 1/2/3
6 Sobic.002G192000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@AN1-like zinc finger domain containing protein, expressed -
7 Sobic.009G198600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
8 Sobic.002G319500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@AAA family ATPase, putative, expressed K08900: mitochondrial chaperone BCS1
9 Sobic.002G353900 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed -
10 Sobic.006G158600 short-chain dehydrogenase/reductase, putative, expressed K15095: (+)-neomenthol dehydrogenase
11 Sobic.001G192600 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed K17794: mitochondrial import inner membrane translocase subunit TIM23
12 Sobic.001G447100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ATP8, putative, expressed -
13 Sobic.009G159400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@universal stress protein domain containing protein, putative, expressed -
14 Sobic.003G063200 uncharacterized Cys-rich domain containing protein, putative, expressed -
15 Sobic.007G074200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@- -
16 Sobic.008G044300 U-box domain-containing protein, putative, expressed -
17 Sobic.001G308300 expressed protein -
18 Sobic.002G333400 KI domain interacting kinase 1, putative, expressed -
19 Sobic.001G481100 DUF581 domain containing protein, expressed -
20 Sobic.006G158266 - -


Gene co-expression network
sample Sobic006G100200 Sobic006G100200 Sobic008G111500 Sobic008G111500 Sobic006G100200--Sobic008G111500 Sobic003G041200 Sobic003G041200 Sobic006G100200--Sobic003G041200 Sobic005G139075 Sobic005G139075 Sobic006G100200--Sobic005G139075 Sobic009G221400 Sobic009G221400 Sobic006G100200--Sobic009G221400 Sobic002G336600 Sobic002G336600 Sobic006G100200--Sobic002G336600 Sobic002G192000 Sobic002G192000 Sobic006G100200--Sobic002G192000 Sobic009G198600 Sobic009G198600 Sobic006G100200--Sobic009G198600 Sobic002G319500 Sobic002G319500 Sobic006G100200--Sobic002G319500 Sobic002G353900 Sobic002G353900 Sobic006G100200--Sobic002G353900 Sobic007G074200 Sobic007G074200 Sobic008G111500--Sobic007G074200 Sobic009G131400 Sobic009G131400 Sobic008G111500--Sobic009G131400 Sobic001G447100 Sobic001G447100 Sobic008G111500--Sobic001G447100 Sobic008G111500--Sobic006G100200 Sobic003G349700 Sobic003G349700 Sobic008G111500--Sobic003G349700 Sobic004G117600 Sobic004G117600 Sobic008G111500--Sobic004G117600 Sobic002G338250 Sobic002G338250 Sobic008G111500--Sobic002G338250 Sobic001G100600 Sobic001G100600 Sobic008G111500--Sobic001G100600 Sobic002G393600 Sobic002G393600 Sobic008G111500--Sobic002G393600 Sobic003G041200--Sobic002G336600 Sobic007G155000 Sobic007G155000 Sobic003G041200--Sobic007G155000 Sobic001G435000 Sobic001G435000 Sobic003G041200--Sobic001G435000 Sobic009G159400 Sobic009G159400 Sobic003G041200--Sobic009G159400 Sobic009G234100 Sobic009G234100 Sobic003G041200--Sobic009G234100 Sobic004G208700 Sobic004G208700 Sobic003G041200--Sobic004G208700 Sobic001G038900 Sobic001G038900 Sobic003G041200--Sobic001G038900 Sobic006G158600 Sobic006G158600 Sobic003G041200--Sobic006G158600 Sobic004G061200 Sobic004G061200 Sobic003G041200--Sobic004G061200 Sobic002G314700 Sobic002G314700 Sobic005G139075--Sobic002G314700 Sobic005G139075--Sobic009G198600 Sobic001G112200 Sobic001G112200 Sobic005G139075--Sobic001G112200 Sobic009G184000 Sobic009G184000 Sobic005G139075--Sobic009G184000 Sobic009G145700 Sobic009G145700 Sobic005G139075--Sobic009G145700 Sobic003G362700 Sobic003G362700 Sobic005G139075--Sobic003G362700 Sobic001G502400 Sobic001G502400 Sobic005G139075--Sobic001G502400 Sobic006G235100 Sobic006G235100 Sobic005G139075--Sobic006G235100 Sobic008G139600 Sobic008G139600 Sobic005G139075--Sobic008G139600 Sobic009G221400--Sobic002G353900 Sobic003G041600 Sobic003G041600 Sobic009G221400--Sobic003G041600 Sobic009G221400--Sobic006G158600 Sobic008G044300 Sobic008G044300 Sobic009G221400--Sobic008G044300 Sobic009G221400--Sobic002G336600 Sobic001G477600 Sobic001G477600 Sobic009G221400--Sobic001G477600 Sobic009G221400--Sobic004G208700 Sobic009G070400 Sobic009G070400 Sobic009G221400--Sobic009G070400 Sobic009G221400--Sobic002G192000 Sobic004G237800 Sobic004G237800 Sobic002G336600--Sobic004G237800 Sobic007G074000 Sobic007G074000 Sobic002G336600--Sobic007G074000 Sobic002G336600--Sobic004G208700 Sobic004G229800 Sobic004G229800 Sobic002G336600--Sobic004G229800 Sobic003G369100 Sobic003G369100 Sobic002G336600--Sobic003G369100 Sobic002G336600--Sobic001G435000 Sobic002G140400 Sobic002G140400 Sobic002G336600--Sobic002G140400 Sobic004G141200 Sobic004G141200 Sobic002G336600--Sobic004G141200 Sobic003G345100 Sobic003G345100 Sobic002G336600--Sobic003G345100 Sobic001G018300 Sobic001G018300 Sobic002G192000--Sobic001G018300 Sobic001G367600 Sobic001G367600 Sobic002G192000--Sobic001G367600 Sobic001G231400 Sobic001G231400 Sobic002G192000--Sobic001G231400 Sobic004G243100 Sobic004G243100 Sobic002G192000--Sobic004G243100 Sobic002G192000--Sobic006G158600 Sobic001G318700 Sobic001G318700 Sobic002G192000--Sobic001G318700 Sobic002G192000--Sobic001G038900 Sobic002G192000--Sobic002G140400 Sobic001G423800 Sobic001G423800 Sobic002G192000--Sobic001G423800 Sobic001G259900 Sobic001G259900 Sobic009G198600--Sobic001G259900 Sobic003G442100 Sobic003G442100 Sobic009G198600--Sobic003G442100 Sobic001G310600 Sobic001G310600 Sobic009G198600--Sobic001G310600 Sobic009G198600--Sobic008G044300 Sobic005G186100 Sobic005G186100 Sobic009G198600--Sobic005G186100 Sobic009G198600--Sobic009G184000 Sobic009G198600--Sobic001G502400 Sobic009G198600--Sobic006G235100 Sobic009G198600--Sobic005G139075 Sobic002G319500--Sobic002G192000 Sobic003G320800 Sobic003G320800 Sobic002G319500--Sobic003G320800 Sobic001G192600 Sobic001G192600 Sobic002G319500--Sobic001G192600 Sobic010G136000 Sobic010G136000 Sobic002G319500--Sobic010G136000 Sobic002G319500--Sobic001G038900 Sobic002G319500--Sobic002G140400 Sobic003G430400 Sobic003G430400 Sobic002G319500--Sobic003G430400 Sobic002G319500--Sobic007G155000 Sobic002G319500--Sobic001G367600 Sobic002G055700 Sobic002G055700 Sobic002G353900--Sobic002G055700 Sobic003G382600 Sobic003G382600 Sobic002G353900--Sobic003G382600 Sobic002G353900--Sobic001G367600 Sobic002G302500 Sobic002G302500 Sobic002G353900--Sobic002G302500 Sobic002G353900--Sobic002G192000 Sobic002G353900--Sobic009G221400 Sobic009G139400 Sobic009G139400 Sobic002G353900--Sobic009G139400 Sobic002G353900--Sobic006G158600 Sobic002G353900--Sobic009G234100
Octagon: transcription factors


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