Gene annotation
Transcriptome id Sobic.002G319500.1
Synonym Sb02g034790
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
AAA family ATPase, putative, expressed
UniProt C5XA20
Pfam PF14363 PF00004
Panther DB PTHR23070 PTHR23070:SF37
NCBI CDD KOG0743; AAA+-type ATPase
KEGG Orthology K08900; mitochondrial chaperone BCS1
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT3G50940 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os07g33390.1 : BCS1 protein, putative, expressed
MaizeGDB (Corn) Zm00025a016039 , Zm00025a028637 , Zm00025a008606
Brachypodium KQK15981 , KQJ85594 , KQK15975 , PNT75004 , PNT75003 , KQK17345 , KQJ98547 , KQK20476 , KQK20475
Barley HORVU5Hr1G000640.8 , HORVU5Hr1G000640.1 , HORVU5Hr1G000640.3 , HORVU5Hr1G000640.5 , HORVU5Hr1G000640.4 , HORVU5Hr1G000640.7 , HORVU2Hr1G046240.1 , HORVU2Hr1G046240.3 , HORVU5Hr1G026270.4 , HORVU5Hr1G026270.5 , HORVU5Hr1G026270.6 , HORVU5Hr1G026270.1 , HORVU5Hr1G026270.2 , HORVU5Hr1G026270.3 , HORVU2Hr1G046310.3 , HORVU2Hr1G046310.1 , HORVU2Hr1G046330.4 , HORVU2Hr1G046330.1 , HORVU2Hr1G046330.2 , HORVU2Hr1G046330.3 , HORVU5Hr1G124260.2 , HORVU5Hr1G124260.1 , HORVU3Hr1G114150.2 , HORVU5Hr1G124290.8 , HORVU5Hr1G124290.6 , HORVU5Hr1G124290.4 , HORVU5Hr1G124290.3 , HORVU5Hr1G124290.2 , HORVU5Hr1G124290.1 , HORVU5Hr1G124290.7 , HORVU5Hr1G124290.5 , HORVU3Hr1G117690.1 , HORVU3Hr1G086670.1 , HORVU3Hr1G086670.2 , HORVU3Hr1G086670.3 , HORVU3Hr1G086670.4 , HORVU3Hr1G086670.5 , HORVU6Hr1G021770.3 , HORVU6Hr1G021770.2 , HORVU6Hr1G021770.1 , HORVU6Hr1G021770.4 , HORVU5Hr1G107410.2 , HORVU5Hr1G107410.3 , HORVU5Hr1G107410.4 , HORVU1Hr1G093600.5 , HORVU1Hr1G093600.4 , HORVU1Hr1G093600.1 , HORVU1Hr1G093600.3 , HORVU1Hr1G093600.2 , HORVU2Hr1G046180.3 , HORVU2Hr1G046180.2 , HORVU2Hr1G046180.1 , HORVU2Hr1G046180.4
Wheat TraesCS1D02G439400 , TraesCS2B02G247000 , TraesCS3A02G357100 , TraesCS2A02G221700 , TraesCS1D02G439500 , TraesCS1B02G465000 , TraesCS1A02G430200 , TraesCS3B02G389700 , TraesCS3D02G350900 , TraesCS1A02G429300 , TraesCS2D02G227400 , TraesCS2A02G221500 , TraesCS1D02G438800 , TraesCS1B02G464100 , TraesCS2D02G227500 , TraesCS3A02G356800 , TraesCS1A02G430100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G192000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@AN1-like zinc finger domain containing protein, expressed -
2 Sobic.003G320800 peroxidase precursor, putative, expressed K00430: peroxidase
3 Sobic.001G192600 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed K17794: mitochondrial import inner membrane translocase subunit TIM23
4 Sobic.010G136000 expressed protein -
5 Sobic.001G038900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF567 domain containing protein, putative, expressed -
6 Sobic.002G140400 plastocyanin-like domain containing protein, putative, expressed -
7 Sobic.003G430400 OsCML31 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
8 Sobic.007G155000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed K01674: carbonic anhydrase
9 Sobic.001G367600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.009G159400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@universal stress protein domain containing protein, putative, expressed -
11 Sobic.001G100600 expressed protein -
12 Sobic.001G449700 highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@cytochrome P450, putative, expressed K01723: hydroperoxide dehydratase
13 Sobic.002G263400 expressed protein -
14 Sobic.006G158600 short-chain dehydrogenase/reductase, putative, expressed K15095: (+)-neomenthol dehydrogenase
15 Sobic.010G066700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein anthranilate N-benzoyltransferase protein 1 (Os)(PubMedID : 27208977)@transferase family protein, putative, expressed -
16 Sobic.009G247900 similar to Putative late embryogenesis abundant protein(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@late embryogenesis abundant protein, putative, expressed -
17 Sobic.006G056400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc-finger protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
18 Sobic.007G074000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@- -
19 Sobic.003G041200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.002G333400 KI domain interacting kinase 1, putative, expressed -


Gene co-expression network
sample Sobic002G319500 Sobic002G319500 Sobic002G192000 Sobic002G192000 Sobic002G319500--Sobic002G192000 Sobic003G320800 Sobic003G320800 Sobic002G319500--Sobic003G320800 Sobic001G192600 Sobic001G192600 Sobic002G319500--Sobic001G192600 Sobic010G136000 Sobic010G136000 Sobic002G319500--Sobic010G136000 Sobic001G038900 Sobic001G038900 Sobic002G319500--Sobic001G038900 Sobic002G140400 Sobic002G140400 Sobic002G319500--Sobic002G140400 Sobic003G430400 Sobic003G430400 Sobic002G319500--Sobic003G430400 Sobic007G155000 Sobic007G155000 Sobic002G319500--Sobic007G155000 Sobic001G367600 Sobic001G367600 Sobic002G319500--Sobic001G367600 Sobic001G018300 Sobic001G018300 Sobic002G192000--Sobic001G018300 Sobic002G192000--Sobic001G367600 Sobic001G231400 Sobic001G231400 Sobic002G192000--Sobic001G231400 Sobic004G243100 Sobic004G243100 Sobic002G192000--Sobic004G243100 Sobic006G158600 Sobic006G158600 Sobic002G192000--Sobic006G158600 Sobic001G318700 Sobic001G318700 Sobic002G192000--Sobic001G318700 Sobic002G192000--Sobic001G038900 Sobic002G192000--Sobic002G140400 Sobic001G423800 Sobic001G423800 Sobic002G192000--Sobic001G423800 Sobic003G320800--Sobic007G155000 Sobic003G320800--Sobic010G136000 Sobic003G033900 Sobic003G033900 Sobic003G320800--Sobic003G033900 Sobic003G021500 Sobic003G021500 Sobic003G320800--Sobic003G021500 Sobic007G036900 Sobic007G036900 Sobic003G320800--Sobic007G036900 Sobic002G188900 Sobic002G188900 Sobic003G320800--Sobic002G188900 Sobic003G320800--Sobic002G319500 Sobic006G234800 Sobic006G234800 Sobic003G320800--Sobic006G234800 Sobic001G435000 Sobic001G435000 Sobic003G320800--Sobic001G435000 Sobic001G192600--Sobic002G192000 Sobic001G192600--Sobic001G367600 Sobic001G192600--Sobic001G038900 Sobic001G192600--Sobic006G158600 Sobic001G192600--Sobic001G423800 Sobic001G055600 Sobic001G055600 Sobic001G192600--Sobic001G055600 Sobic001G481100 Sobic001G481100 Sobic001G192600--Sobic001G481100 Sobic009G221400 Sobic009G221400 Sobic001G192600--Sobic009G221400 Sobic002G353900 Sobic002G353900 Sobic001G192600--Sobic002G353900 Sobic010G066700 Sobic010G066700 Sobic010G136000--Sobic010G066700 Sobic007G025500 Sobic007G025500 Sobic010G136000--Sobic007G025500 Sobic009G183400 Sobic009G183400 Sobic010G136000--Sobic009G183400 Sobic010G136000--Sobic003G320800 Sobic007G057000 Sobic007G057000 Sobic010G136000--Sobic007G057000 Sobic004G340900 Sobic004G340900 Sobic010G136000--Sobic004G340900 Sobic010G136000--Sobic001G038900 Sobic004G259366 Sobic004G259366 Sobic010G136000--Sobic004G259366 Sobic010G136000--Sobic002G188900 Sobic001G038900--Sobic002G140400 Sobic001G140900 Sobic001G140900 Sobic001G038900--Sobic001G140900 Sobic008G136400 Sobic008G136400 Sobic001G038900--Sobic008G136400 Sobic008G050600 Sobic008G050600 Sobic001G038900--Sobic008G050600 Sobic001G038900--Sobic001G423800 Sobic009G159400 Sobic009G159400 Sobic001G038900--Sobic009G159400 Sobic003G345100 Sobic003G345100 Sobic001G038900--Sobic003G345100 Sobic001G038900--Sobic001G367600 Sobic004G189400 Sobic004G189400 Sobic001G038900--Sobic004G189400 Sobic002G140400--Sobic001G038900 Sobic002G263400 Sobic002G263400 Sobic002G140400--Sobic002G263400 Sobic002G140400--Sobic004G189400 Sobic002G140400--Sobic001G423800 Sobic002G140400--Sobic008G136400 Sobic007G074000 Sobic007G074000 Sobic002G140400--Sobic007G074000 Sobic004G237800 Sobic004G237800 Sobic002G140400--Sobic004G237800 Sobic002G140400--Sobic008G050600 Sobic003G286600 Sobic003G286600 Sobic002G140400--Sobic003G286600 Sobic003G430400--Sobic002G263400 Sobic003G430400--Sobic002G140400 Sobic001G040200 Sobic001G040200 Sobic003G430400--Sobic001G040200 Sobic006G066200 Sobic006G066200 Sobic003G430400--Sobic006G066200 Sobic002G140300 Sobic002G140300 Sobic003G430400--Sobic002G140300 Sobic003G430400--Sobic007G074000 Sobic003G092900 Sobic003G092900 Sobic003G430400--Sobic003G092900 Sobic002G356101 Sobic002G356101 Sobic003G430400--Sobic002G356101 Sobic004G222500 Sobic004G222500 Sobic003G430400--Sobic004G222500 Sobic007G155000--Sobic001G435000 Sobic004G208700 Sobic004G208700 Sobic007G155000--Sobic004G208700 Sobic009G234100 Sobic009G234100 Sobic007G155000--Sobic009G234100 Sobic007G155000--Sobic009G159400 Sobic007G155000--Sobic002G140400 Sobic004G229800 Sobic004G229800 Sobic007G155000--Sobic004G229800 Sobic007G155000--Sobic001G038900 Sobic007G155000--Sobic010G066700 Sobic010G259600 Sobic010G259600 Sobic007G155000--Sobic010G259600 Sobic001G367600--Sobic002G192000 Sobic001G367600--Sobic001G140900 Sobic001G367600--Sobic001G038900 Sobic001G231700 Sobic001G231700 Sobic001G367600--Sobic001G231700 Sobic002G017800 Sobic002G017800 Sobic001G367600--Sobic002G017800 Sobic004G100700 Sobic004G100700 Sobic001G367600--Sobic004G100700 Sobic006G103000 Sobic006G103000 Sobic001G367600--Sobic006G103000 Sobic002G055700 Sobic002G055700 Sobic001G367600--Sobic002G055700 Sobic001G367600--Sobic002G353900
Octagon: transcription factors


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