Gene annotation
Transcriptome id Sobic.008G044300.1
Synonym PUB23, Sb08g003790
Functional annotation U-box domain-containing protein, putative, expressed
UniProt A0A1B6PB84
Pfam PF04564
Panther DB PTHR22849 PTHR22849:SF30
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016567; protein ubiquitination GO:0004842ubiquitin-protein transferase activity


Orthologs (automatic annotation)
TAIR AT3G52450 : plant U-box 22
RAP-DB (Rice) LOC_Os12g06410.1 : U-box domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a011312 , Zm00025a053959
Brachypodium KQJ92155
Barley HORVU6Hr1G034250.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G310600 expressed protein -
2 Sobic.003G041600 DUF623 domain containing protein, expressed -
3 Sobic.009G221400 B3 DNA binding domain containing protein, expressed K09287: RAV-like factor
4 Sobic.001G112200 LTPL118 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
5 Sobic.003G364600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl hydrolases family 17, putative, expressed -
6 Sobic.005G186100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@patatin, putative, expressed -
7 Sobic.001G279500 VQ domain containing protein, putative, expressed -
8 Sobic.010G225251 - -
9 Sobic.002G338500 sugar transporter 1(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed -
10 Sobic.001G259900 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
11 Sobic.002G353900 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed -
12 Sobic.002G336600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@nucleoside transporter, putative, expressed K15014: SLC29A1_2_3, solute carrier family 29 (equilibrative nucleoside transporter), member 1/2/3
13 Sobic.004G208700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CHIT1 - Chitinase family protein precursor, expressed K01183: chitinase
14 Sobic.001G138600 VQ domain containing protein, putative, expressed -
15 Sobic.003G364300 similar to Basic class III chitinase OsChib3b precursor(PubMedID : 29862293)@glycosyl hydrolase, putative, expressed K01183: chitinase
16 Sobic.003G382600 ARGOS, putative, expressed -
17 Sobic.003G345100 flavonol synthase/flavanone 3-hydroxylase, putative, expressed -
18 Sobic.001G477600 zinc finger protein, putative, expressed -
19 Sobic.002G192000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@AN1-like zinc finger domain containing protein, expressed -
20 Sobic.009G198600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic008G044300 Sobic008G044300 Sobic001G310600 Sobic001G310600 Sobic008G044300--Sobic001G310600 Sobic003G041600 Sobic003G041600 Sobic008G044300--Sobic003G041600 Sobic009G221400 Sobic009G221400 Sobic008G044300--Sobic009G221400 Sobic001G112200 Sobic001G112200 Sobic008G044300--Sobic001G112200 Sobic003G364600 Sobic003G364600 Sobic008G044300--Sobic003G364600 Sobic005G186100 Sobic005G186100 Sobic008G044300--Sobic005G186100 Sobic001G279500 Sobic001G279500 Sobic008G044300--Sobic001G279500 Sobic010G225251 Sobic010G225251 Sobic008G044300--Sobic010G225251 Sobic002G338500 Sobic002G338500 Sobic008G044300--Sobic002G338500 Sobic003G442100 Sobic003G442100 Sobic001G310600--Sobic003G442100 Sobic003G043600 Sobic003G043600 Sobic001G310600--Sobic003G043600 Sobic001G310600--Sobic001G112200 Sobic006G075400 Sobic006G075400 Sobic001G310600--Sobic006G075400 Sobic001G502400 Sobic001G502400 Sobic001G310600--Sobic001G502400 Sobic001G318700 Sobic001G318700 Sobic001G310600--Sobic001G318700 Sobic002G336600 Sobic002G336600 Sobic001G310600--Sobic002G336600 Sobic009G184000 Sobic009G184000 Sobic001G310600--Sobic009G184000 Sobic001G079300 Sobic001G079300 Sobic001G310600--Sobic001G079300 Sobic003G041600--Sobic009G221400 Sobic003G041600--Sobic008G044300 Sobic006G143400 Sobic006G143400 Sobic003G041600--Sobic006G143400 Sobic009G069800 Sobic009G069800 Sobic003G041600--Sobic009G069800 Sobic003G364300 Sobic003G364300 Sobic003G041600--Sobic003G364300 Sobic001G091600 Sobic001G091600 Sobic003G041600--Sobic001G091600 Sobic010G166500 Sobic010G166500 Sobic003G041600--Sobic010G166500 Sobic001G477600 Sobic001G477600 Sobic003G041600--Sobic001G477600 Sobic010G156500 Sobic010G156500 Sobic003G041600--Sobic010G156500 Sobic002G353900 Sobic002G353900 Sobic009G221400--Sobic002G353900 Sobic009G221400--Sobic003G041600 Sobic006G158600 Sobic006G158600 Sobic009G221400--Sobic006G158600 Sobic009G221400--Sobic008G044300 Sobic009G221400--Sobic002G336600 Sobic009G221400--Sobic001G477600 Sobic004G208700 Sobic004G208700 Sobic009G221400--Sobic004G208700 Sobic009G070400 Sobic009G070400 Sobic009G221400--Sobic009G070400 Sobic002G192000 Sobic002G192000 Sobic009G221400--Sobic002G192000 Sobic001G112200--Sobic009G184000 Sobic001G112200--Sobic001G318700 Sobic001G138600 Sobic001G138600 Sobic001G112200--Sobic001G138600 Sobic003G369100 Sobic003G369100 Sobic001G112200--Sobic003G369100 Sobic007G169700 Sobic007G169700 Sobic001G112200--Sobic007G169700 Sobic004G237800 Sobic004G237800 Sobic001G112200--Sobic004G237800 Sobic009G145700 Sobic009G145700 Sobic001G112200--Sobic009G145700 Sobic007G074000 Sobic007G074000 Sobic001G112200--Sobic007G074000 Sobic001G112200--Sobic001G310600 Sobic003G364600--Sobic007G074000 Sobic004G141200 Sobic004G141200 Sobic003G364600--Sobic004G141200 Sobic007G036900 Sobic007G036900 Sobic003G364600--Sobic007G036900 Sobic003G364600--Sobic003G369100 Sobic001G308300 Sobic001G308300 Sobic003G364600--Sobic001G308300 Sobic002G140400 Sobic002G140400 Sobic003G364600--Sobic002G140400 Sobic003G364600--Sobic006G158600 Sobic001G391500 Sobic001G391500 Sobic003G364600--Sobic001G391500 Sobic003G339500 Sobic003G339500 Sobic003G364600--Sobic003G339500 Sobic005G186100--Sobic001G138600 Sobic005G186100--Sobic001G112200 Sobic006G056400 Sobic006G056400 Sobic005G186100--Sobic006G056400 Sobic002G333400 Sobic002G333400 Sobic005G186100--Sobic002G333400 Sobic005G186100--Sobic001G318700 Sobic003G228900 Sobic003G228900 Sobic005G186100--Sobic003G228900 Sobic001G481100 Sobic001G481100 Sobic005G186100--Sobic001G481100 Sobic005G186100--Sobic001G079300 Sobic005G186100--Sobic009G184000 Sobic003G382600 Sobic003G382600 Sobic001G279500--Sobic003G382600 Sobic001G279500--Sobic001G112200 Sobic001G279500--Sobic010G156500 Sobic001G279500--Sobic001G310600 Sobic001G279500--Sobic003G364300 Sobic005G107900 Sobic005G107900 Sobic001G279500--Sobic005G107900 Sobic001G279500--Sobic001G502400 Sobic003G345100 Sobic003G345100 Sobic001G279500--Sobic003G345100 Sobic001G279500--Sobic002G338500 Sobic010G225251--Sobic001G112200 Sobic004G336500 Sobic004G336500 Sobic010G225251--Sobic004G336500 Sobic010G225251--Sobic001G310600 Sobic010G225251--Sobic009G069800 Sobic010G225251--Sobic001G138600 Sobic010G225251--Sobic009G184000 Sobic002G389400 Sobic002G389400 Sobic010G225251--Sobic002G389400 Sobic004G109900 Sobic004G109900 Sobic010G225251--Sobic004G109900 Sobic010G225251--Sobic007G169700 Sobic002G338500--Sobic003G043600 Sobic002G338500--Sobic003G382600 Sobic002G055700 Sobic002G055700 Sobic002G338500--Sobic002G055700 Sobic002G338500--Sobic010G156500 Sobic002G338500--Sobic003G364300 Sobic009G145500 Sobic009G145500 Sobic002G338500--Sobic009G145500 Sobic002G338500--Sobic009G145700 Sobic002G338500--Sobic002G353900 Sobic005G196800 Sobic005G196800 Sobic002G338500--Sobic005G196800
Octagon: transcription factors


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