Gene annotation
Transcriptome id Sobic.003G364300.1
Synonym ATCHIA, CHIA, Sb03g040600
Functional annotation similar to Basic class III chitinase OsChib3b precursor (PubMedID : 29862293)
glycosyl hydrolase, putative, expressed
UniProt C5XQJ2
Pfam PF00704
Panther DB PTHR11177 PTHR11177:SF198
NCBI CDD -
KEGG Orthology K01183; chitinase
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds


Orthologs (automatic annotation)
TAIR AT5G24090 : chitinase A
RAP-DB (Rice) LOC_Os01g64110.1 : glycosyl hydrolase, putative, expressed
MaizeGDB (Corn) Zm00025a028171 , Zm00025a026760 , Zm00025a030311 , Zm00025a026759
Brachypodium KQK09026 , PNT72617 , KQK09284 , KQK10704 , KQK10703 , KQK10702 , PNT72403
Barley HORVU3Hr1G064200.2 , HORVU3Hr1G064200.1 , HORVU3Hr1G064200.3 , HORVU3Hr1G087870.1 , HORVU3Hr1G054970.1 , HORVU3Hr1G084220.1 , HORVU3Hr1G084250.1 , HORVU3Hr1G084220.3 , HORVU3Hr1G084220.2 , HORVU3Hr1G083670.2
Wheat TraesCS3B02G408600 , TraesCS3B02G294900 , TraesCS3A02G261700 , TraesCS3D02G366400 , TraesCS3D02G261700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G156500 expressed protein -
2 Sobic.009G231000 - -
3 Sobic.002G338500 sugar transporter 1(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed -
4 Sobic.003G364000 glycosyl hydrolase, putative, expressed K01183: chitinase
5 Sobic.007G008100 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
6 Sobic.002G042000 gibberellin receptor GID1L2, putative, expressed -
7 Sobic.003G382600 ARGOS, putative, expressed -
8 Sobic.001G054500 expressed protein -
9 Sobic.002G302500 -(PubMedID : 29147737)@serine/threonine-protein kinase receptor precursor, putative, expressed -
10 Sobic.001G279500 VQ domain containing protein, putative, expressed -
11 Sobic.009G154200 MYB family transcription factor, putative, expressed -
12 Sobic.005G213600 Deletion of the Low Germination Stimulant 1 (LGS1) gene gives a Striga‐resistance trait in sorghum. Strigolactone precursor 18-hydroxycarlactonoic acid (18-OH-CLA) is a substrate for LGS1.(PubMedID : 34525227)@sulfotransferase domain containing protein, expressed -
13 Sobic.005G213500 leucoanthocyanidin dioxygenase, putative, expressed -
14 Sobic.002G055700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed K01183: chitinase
15 Sobic.003G280200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
16 Sobic.002G004900 transporter family protein, putative, expressed -
17 Sobic.010G259600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein O-methyltransferase ZRP4 (Os)(PubMedID : 27208977)@transferase family protein, putative, expressed -
18 Sobic.002G353900 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed -
19 Sobic.003G041600 DUF623 domain containing protein, expressed -
20 Sobic.010G166500 amino acid transporter, putative, expressed -


Gene co-expression network
sample Sobic003G364300 Sobic003G364300 Sobic010G156500 Sobic010G156500 Sobic003G364300--Sobic010G156500 Sobic009G231000 Sobic009G231000 Sobic003G364300--Sobic009G231000 Sobic002G338500 Sobic002G338500 Sobic003G364300--Sobic002G338500 Sobic003G364000 Sobic003G364000 Sobic003G364300--Sobic003G364000 Sobic007G008100 Sobic007G008100 Sobic003G364300--Sobic007G008100 Sobic002G042000 Sobic002G042000 Sobic003G364300--Sobic002G042000 Sobic003G382600 Sobic003G382600 Sobic003G364300--Sobic003G382600 Sobic001G054500 Sobic001G054500 Sobic003G364300--Sobic001G054500 Sobic002G302500 Sobic002G302500 Sobic003G364300--Sobic002G302500 Sobic010G156500--Sobic003G364300 Sobic010G156500--Sobic002G338500 Sobic010G156500--Sobic003G364000 Sobic010G156500--Sobic003G382600 Sobic005G213500 Sobic005G213500 Sobic010G156500--Sobic005G213500 Sobic001G279500 Sobic001G279500 Sobic010G156500--Sobic001G279500 Sobic010G156500--Sobic002G302500 Sobic003G280200 Sobic003G280200 Sobic010G156500--Sobic003G280200 Sobic010G156500--Sobic009G231000 Sobic009G231000--Sobic003G364300 Sobic010G259600 Sobic010G259600 Sobic009G231000--Sobic010G259600 Sobic001G325400 Sobic001G325400 Sobic009G231000--Sobic001G325400 Sobic006G039100 Sobic006G039100 Sobic009G231000--Sobic006G039100 Sobic002G125700 Sobic002G125700 Sobic009G231000--Sobic002G125700 Sobic002G055700 Sobic002G055700 Sobic009G231000--Sobic002G055700 Sobic003G087300 Sobic003G087300 Sobic009G231000--Sobic003G087300 Sobic003G297600 Sobic003G297600 Sobic009G231000--Sobic003G297600 Sobic009G231000--Sobic010G156500 Sobic003G043600 Sobic003G043600 Sobic002G338500--Sobic003G043600 Sobic002G338500--Sobic003G382600 Sobic002G338500--Sobic002G055700 Sobic002G338500--Sobic010G156500 Sobic002G338500--Sobic003G364300 Sobic009G145500 Sobic009G145500 Sobic002G338500--Sobic009G145500 Sobic009G145700 Sobic009G145700 Sobic002G338500--Sobic009G145700 Sobic002G353900 Sobic002G353900 Sobic002G338500--Sobic002G353900 Sobic005G196800 Sobic005G196800 Sobic002G338500--Sobic005G196800 Sobic010G088700 Sobic010G088700 Sobic003G364000--Sobic010G088700 Sobic009G217700 Sobic009G217700 Sobic003G364000--Sobic009G217700 Sobic003G364000--Sobic010G156500 Sobic003G364000--Sobic003G364300 Sobic003G364000--Sobic003G280200 Sobic010G259500 Sobic010G259500 Sobic003G364000--Sobic010G259500 Sobic003G364000--Sobic005G213500 Sobic002G034800 Sobic002G034800 Sobic003G364000--Sobic002G034800 Sobic003G364000--Sobic003G382600 Sobic007G008100--Sobic002G042000 Sobic007G008100--Sobic001G054500 Sobic004G336500 Sobic004G336500 Sobic007G008100--Sobic004G336500 Sobic007G008100--Sobic003G364300 Sobic007G008000 Sobic007G008000 Sobic007G008100--Sobic007G008000 Sobic009G069800 Sobic009G069800 Sobic007G008100--Sobic009G069800 Sobic009G154200 Sobic009G154200 Sobic007G008100--Sobic009G154200 Sobic008G139600 Sobic008G139600 Sobic007G008100--Sobic008G139600 Sobic002G040900 Sobic002G040900 Sobic007G008100--Sobic002G040900 Sobic002G042000--Sobic007G008100 Sobic002G042000--Sobic001G054500 Sobic002G042000--Sobic002G040900 Sobic002G042000--Sobic003G364300 Sobic002G042000--Sobic009G069800 Sobic001G256200 Sobic001G256200 Sobic002G042000--Sobic001G256200 Sobic006G101300 Sobic006G101300 Sobic002G042000--Sobic006G101300 Sobic004G148100 Sobic004G148100 Sobic002G042000--Sobic004G148100 Sobic002G042000--Sobic007G008000 Sobic003G382600--Sobic002G055700 Sobic004G189400 Sobic004G189400 Sobic003G382600--Sobic004G189400 Sobic003G382600--Sobic002G338500 Sobic003G382600--Sobic002G353900 Sobic003G303100 Sobic003G303100 Sobic003G382600--Sobic003G303100 Sobic004G237800 Sobic004G237800 Sobic003G382600--Sobic004G237800 Sobic005G091500 Sobic005G091500 Sobic003G382600--Sobic005G091500 Sobic008G050600 Sobic008G050600 Sobic003G382600--Sobic008G050600 Sobic003G382600--Sobic003G043600 Sobic001G054500--Sobic002G042000 Sobic001G054500--Sobic007G008100 Sobic001G054500--Sobic002G040900 Sobic001G054500--Sobic001G256200 Sobic001G054500--Sobic003G364300 Sobic001G054500--Sobic004G148100 Sobic006G113500 Sobic006G113500 Sobic001G054500--Sobic006G113500 Sobic001G054500--Sobic007G008000 Sobic009G009700 Sobic009G009700 Sobic001G054500--Sobic009G009700 Sobic002G302500--Sobic002G353900 Sobic002G017800 Sobic002G017800 Sobic002G302500--Sobic002G017800 Sobic009G077800 Sobic009G077800 Sobic002G302500--Sobic009G077800 Sobic002G302500--Sobic002G055700 Sobic001G318500 Sobic001G318500 Sobic002G302500--Sobic001G318500 Sobic002G302500--Sobic002G338500 Sobic002G302500--Sobic010G156500 Sobic002G302500--Sobic003G364300 Sobic002G004900 Sobic002G004900 Sobic002G302500--Sobic002G004900
Octagon: transcription factors


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