Gene annotation
Transcriptome id Sobic.005G213600.1
Synonym Sb05g026550, ATST4A, Low Germination Stimulant 1, LGS1, ST4A
Functional annotation Deletion of the Low Germination Stimulant 1 (LGS1) gene gives a Striga‐resistance trait in sorghum. Strigolactone precursor 18-hydroxycarlactonoic acid (18-OH-CLA) is a substrate for LGS1. (PubMedID : 34525227)
sulfotransferase domain containing protein, expressed
UniProt A0A1B6PTZ0
Pfam PF13469
Panther DB PTHR11783 PTHR11783:SF91
NCBI CDD KOG1584; Sulfotransferase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G45070 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os11g30910.1 : sulfotransferase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a026021
Brachypodium KQJ91404 , KQJ81550
Barley HORVU7Hr1G008150.2 , HORVU7Hr1G008150.1 , HORVU7Hr1G008150.4 , HORVU1Hr1G080080.4 , HORVU1Hr1G080080.3 , HORVU1Hr1G080080.1
Wheat TraesCS1D02G363600 , TraesCS1A02G358700 , TraesCS2B02G003100 , TraesCS5D02G353900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G156500 expressed protein -
2 Sobic.005G213500 leucoanthocyanidin dioxygenase, putative, expressed -
3 Sobic.010G043900 expressed protein -
4 Sobic.003G364300 similar to Basic class III chitinase OsChib3b precursor(PubMedID : 29862293)@glycosyl hydrolase, putative, expressed K01183: chitinase
5 Sobic.001G238400 expansin precursor, putative, expressed -
6 Sobic.005G107900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein O-methyltransferase ZRP4 (Zm)(PubMedID : 27208977)@O-methyltransferase, putative, expressed -
7 Sobic.001G502400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@RING-H2 finger protein ATL3F, putative, expressed -
8 Sobic.007G008100 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
9 Sobic.001G313600 heavy metal-associated domain containing protein, expressed -
10 Sobic.002G338500 sugar transporter 1(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed -
11 Sobic.006G235100 expressed protein -
12 Sobic.002G302500 -(PubMedID : 29147737)@serine/threonine-protein kinase receptor precursor, putative, expressed -
13 Sobic.008G127933 - -
14 Sobic.001G304100 LTPL144 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
15 Sobic.010G082600 EF hand family protein, putative, expressed -
16 Sobic.004G109900 zinc finger, C3HC4 type domain containing protein, expressed -
17 Sobic.006G132900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@expressed protein -
18 Sobic.001G237900 expansin precursor, putative, expressed -
19 Sobic.002G042000 gibberellin receptor GID1L2, putative, expressed -
20 Sobic.003G053300 myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant


Gene co-expression network
sample Sobic005G213600 Sobic005G213600 Sobic010G156500 Sobic010G156500 Sobic005G213600--Sobic010G156500 Sobic005G213500 Sobic005G213500 Sobic005G213600--Sobic005G213500 Sobic010G043900 Sobic010G043900 Sobic005G213600--Sobic010G043900 Sobic003G364300 Sobic003G364300 Sobic005G213600--Sobic003G364300 Sobic001G238400 Sobic001G238400 Sobic005G213600--Sobic001G238400 Sobic005G107900 Sobic005G107900 Sobic005G213600--Sobic005G107900 Sobic001G502400 Sobic001G502400 Sobic005G213600--Sobic001G502400 Sobic007G008100 Sobic007G008100 Sobic005G213600--Sobic007G008100 Sobic001G313600 Sobic001G313600 Sobic005G213600--Sobic001G313600 Sobic010G156500--Sobic003G364300 Sobic002G338500 Sobic002G338500 Sobic010G156500--Sobic002G338500 Sobic003G364000 Sobic003G364000 Sobic010G156500--Sobic003G364000 Sobic003G382600 Sobic003G382600 Sobic010G156500--Sobic003G382600 Sobic010G156500--Sobic005G213500 Sobic001G279500 Sobic001G279500 Sobic010G156500--Sobic001G279500 Sobic002G302500 Sobic002G302500 Sobic010G156500--Sobic002G302500 Sobic003G280200 Sobic003G280200 Sobic010G156500--Sobic003G280200 Sobic009G231000 Sobic009G231000 Sobic010G156500--Sobic009G231000 Sobic005G213500--Sobic010G156500 Sobic005G213500--Sobic003G364000 Sobic005G213500--Sobic005G213600 Sobic005G213500--Sobic003G364300 Sobic006G132900 Sobic006G132900 Sobic005G213500--Sobic006G132900 Sobic005G213500--Sobic002G338500 Sobic005G213500--Sobic010G043900 Sobic010G259500 Sobic010G259500 Sobic005G213500--Sobic010G259500 Sobic005G005600 Sobic005G005600 Sobic005G213500--Sobic005G005600 Sobic010G043900--Sobic002G338500 Sobic008G027600 Sobic008G027600 Sobic010G043900--Sobic008G027600 Sobic002G422300 Sobic002G422300 Sobic010G043900--Sobic002G422300 Sobic010G043900--Sobic005G213600 Sobic006G158400 Sobic006G158400 Sobic010G043900--Sobic006G158400 Sobic010G043900--Sobic001G238400 Sobic003G026400 Sobic003G026400 Sobic010G043900--Sobic003G026400 Sobic003G043600 Sobic003G043600 Sobic010G043900--Sobic003G043600 Sobic010G043900--Sobic005G213500 Sobic003G364300--Sobic010G156500 Sobic003G364300--Sobic009G231000 Sobic003G364300--Sobic002G338500 Sobic003G364300--Sobic003G364000 Sobic003G364300--Sobic007G008100 Sobic002G042000 Sobic002G042000 Sobic003G364300--Sobic002G042000 Sobic003G364300--Sobic003G382600 Sobic001G054500 Sobic001G054500 Sobic003G364300--Sobic001G054500 Sobic003G364300--Sobic002G302500 Sobic001G304100 Sobic001G304100 Sobic001G238400--Sobic001G304100 Sobic001G237900 Sobic001G237900 Sobic001G238400--Sobic001G237900 Sobic003G007600 Sobic003G007600 Sobic001G238400--Sobic003G007600 Sobic009G188000 Sobic009G188000 Sobic001G238400--Sobic009G188000 Sobic004G318700 Sobic004G318700 Sobic001G238400--Sobic004G318700 Sobic003G299300 Sobic003G299300 Sobic001G238400--Sobic003G299300 Sobic004G292900 Sobic004G292900 Sobic001G238400--Sobic004G292900 Sobic006G234800 Sobic006G234800 Sobic001G238400--Sobic006G234800 Sobic001G238400--Sobic006G132900 Sobic005G107900--Sobic001G502400 Sobic005G107900--Sobic001G313600 Sobic003G432700 Sobic003G432700 Sobic005G107900--Sobic003G432700 Sobic005G011300 Sobic005G011300 Sobic005G107900--Sobic005G011300 Sobic006G235100 Sobic006G235100 Sobic005G107900--Sobic006G235100 Sobic006G075400 Sobic006G075400 Sobic005G107900--Sobic006G075400 Sobic009G184000 Sobic009G184000 Sobic005G107900--Sobic009G184000 Sobic005G107900--Sobic009G188000 Sobic001G169500 Sobic001G169500 Sobic005G107900--Sobic001G169500 Sobic001G502400--Sobic005G107900 Sobic001G502400--Sobic001G313600 Sobic001G502400--Sobic006G235100 Sobic001G502400--Sobic003G432700 Sobic001G502400--Sobic009G184000 Sobic001G502400--Sobic006G075400 Sobic001G502400--Sobic009G188000 Sobic001G502400--Sobic005G011300 Sobic006G007900 Sobic006G007900 Sobic001G502400--Sobic006G007900 Sobic007G008100--Sobic002G042000 Sobic007G008100--Sobic001G054500 Sobic004G336500 Sobic004G336500 Sobic007G008100--Sobic004G336500 Sobic007G008100--Sobic003G364300 Sobic007G008000 Sobic007G008000 Sobic007G008100--Sobic007G008000 Sobic009G069800 Sobic009G069800 Sobic007G008100--Sobic009G069800 Sobic009G154200 Sobic009G154200 Sobic007G008100--Sobic009G154200 Sobic008G139600 Sobic008G139600 Sobic007G008100--Sobic008G139600 Sobic002G040900 Sobic002G040900 Sobic007G008100--Sobic002G040900 Sobic001G313600--Sobic005G107900 Sobic001G313600--Sobic001G502400 Sobic001G313600--Sobic009G188000 Sobic001G313600--Sobic006G235100 Sobic001G313600--Sobic003G432700 Sobic001G313600--Sobic005G011300 Sobic001G313600--Sobic006G075400 Sobic001G313600--Sobic001G304100 Sobic001G313600--Sobic009G184000
Octagon: transcription factors


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