Gene annotation
Transcriptome id Sobic.010G166500.1
Synonym NAT2, Sb10g021980, AAP1
Functional annotation amino acid transporter, putative, expressed
UniProt C5Z4L1
Pfam PF01490
Panther DB PTHR22950 PTHR22950:SF208
NCBI CDD KOG1303; Amino acid transporters
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G58360 : amino acid permease 1
RAP-DB (Rice) LOC_Os06g36180.1 : amino acid transporter, putative, expressed
MaizeGDB (Corn) Zm00025a051054 , Zm00025a054081
Brachypodium KQK18009
Barley HORVU7Hr1G088560.6 , HORVU7Hr1G088560.7 , HORVU7Hr1G088560.4 , HORVU7Hr1G088560.5 , HORVU7Hr1G088560.2 , HORVU7Hr1G088560.3 , HORVU7Hr1G088560.1
Wheat TraesCS1A02G264500 , TraesCS7A02G356600 , TraesCS7B02G271200 , TraesCS1B02G275200 , TraesCS7D02G366200
Populus PNT48448 , PNT48447 , PNT37317


JBrowse

Open New Page


cDNA sequences
Sobic.010G166500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G389400 OsRCI2-10 - Hydrophobic protein LTI6A, expressed -
2 Sobic.001G112200 LTPL118 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
3 Sobic.009G069800 Hexokinase-7(PubMedID : 26186930)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Hexokinase 1 HXK1 (Os)(PubMedID : 27208977)@hexokinase, putative, expressed K00844: hexokinase
4 Sobic.002G302500 -(PubMedID : 29147737)@serine/threonine-protein kinase receptor precursor, putative, expressed -
5 Sobic.004G321300 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
6 Sobic.010G274900 serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed -
7 Sobic.003G364300 similar to Basic class III chitinase OsChib3b precursor(PubMedID : 29862293)@glycosyl hydrolase, putative, expressed K01183: chitinase
8 Sobic.010G156500 expressed protein -
9 Sobic.001G477600 zinc finger protein, putative, expressed -
10 Sobic.002G055700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed K01183: chitinase
11 Sobic.009G077800 expressed protein -
12 Sobic.003G367200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed K19040: E3 ubiquitin-protein ligase ATL10/75/76/77/78
13 Sobic.002G366600 expressed protein -
14 Sobic.004G169300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@U-box domain-containing protein, putative, expressed -
15 Sobic.009G154200 MYB family transcription factor, putative, expressed -
16 Sobic.003G297600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor 2, putative, expressed -
17 Sobic.003G041600 DUF623 domain containing protein, expressed -
18 Sobic.004G109900 zinc finger, C3HC4 type domain containing protein, expressed -
19 Sobic.009G231000 - -
20 Sobic.002G338500 sugar transporter 1(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed -


Gene co-expression network
sample Sobic010G166500 Sobic010G166500 Sobic002G389400 Sobic002G389400 Sobic010G166500--Sobic002G389400 Sobic001G112200 Sobic001G112200 Sobic010G166500--Sobic001G112200 Sobic009G069800 Sobic009G069800 Sobic010G166500--Sobic009G069800 Sobic002G302500 Sobic002G302500 Sobic010G166500--Sobic002G302500 Sobic004G321300 Sobic004G321300 Sobic010G166500--Sobic004G321300 Sobic010G274900 Sobic010G274900 Sobic010G166500--Sobic010G274900 Sobic003G364300 Sobic003G364300 Sobic010G166500--Sobic003G364300 Sobic010G156500 Sobic010G156500 Sobic010G166500--Sobic010G156500 Sobic001G477600 Sobic001G477600 Sobic010G166500--Sobic001G477600 Sobic002G389400--Sobic001G112200 Sobic009G184000 Sobic009G184000 Sobic002G389400--Sobic009G184000 Sobic004G171400 Sobic004G171400 Sobic002G389400--Sobic004G171400 Sobic003G367200 Sobic003G367200 Sobic002G389400--Sobic003G367200 Sobic002G389400--Sobic004G321300 Sobic010G225251 Sobic010G225251 Sobic002G389400--Sobic010G225251 Sobic004G336500 Sobic004G336500 Sobic002G389400--Sobic004G336500 Sobic002G389400--Sobic010G166500 Sobic001G138600 Sobic001G138600 Sobic002G389400--Sobic001G138600 Sobic001G112200--Sobic009G184000 Sobic001G318700 Sobic001G318700 Sobic001G112200--Sobic001G318700 Sobic001G112200--Sobic001G138600 Sobic003G369100 Sobic003G369100 Sobic001G112200--Sobic003G369100 Sobic007G169700 Sobic007G169700 Sobic001G112200--Sobic007G169700 Sobic004G237800 Sobic004G237800 Sobic001G112200--Sobic004G237800 Sobic009G145700 Sobic009G145700 Sobic001G112200--Sobic009G145700 Sobic007G074000 Sobic007G074000 Sobic001G112200--Sobic007G074000 Sobic001G310600 Sobic001G310600 Sobic001G112200--Sobic001G310600 Sobic009G069800--Sobic004G336500 Sobic007G008100 Sobic007G008100 Sobic009G069800--Sobic007G008100 Sobic009G069800--Sobic010G225251 Sobic002G042000 Sobic002G042000 Sobic009G069800--Sobic002G042000 Sobic001G280800 Sobic001G280800 Sobic009G069800--Sobic001G280800 Sobic009G069800--Sobic001G477600 Sobic004G236100 Sobic004G236100 Sobic009G069800--Sobic004G236100 Sobic009G069800--Sobic010G166500 Sobic003G041600 Sobic003G041600 Sobic009G069800--Sobic003G041600 Sobic002G353900 Sobic002G353900 Sobic002G302500--Sobic002G353900 Sobic002G017800 Sobic002G017800 Sobic002G302500--Sobic002G017800 Sobic009G077800 Sobic009G077800 Sobic002G302500--Sobic009G077800 Sobic002G055700 Sobic002G055700 Sobic002G302500--Sobic002G055700 Sobic001G318500 Sobic001G318500 Sobic002G302500--Sobic001G318500 Sobic002G338500 Sobic002G338500 Sobic002G302500--Sobic002G338500 Sobic002G302500--Sobic010G156500 Sobic002G302500--Sobic003G364300 Sobic002G004900 Sobic002G004900 Sobic002G302500--Sobic002G004900 Sobic004G321300--Sobic004G237800 Sobic009G159400 Sobic009G159400 Sobic004G321300--Sobic009G159400 Sobic008G136400 Sobic008G136400 Sobic004G321300--Sobic008G136400 Sobic008G139600 Sobic008G139600 Sobic004G321300--Sobic008G139600 Sobic001G038900 Sobic001G038900 Sobic004G321300--Sobic001G038900 Sobic004G321300--Sobic002G055700 Sobic001G140900 Sobic001G140900 Sobic004G321300--Sobic001G140900 Sobic005G091500 Sobic005G091500 Sobic004G321300--Sobic005G091500 Sobic003G345100 Sobic003G345100 Sobic004G321300--Sobic003G345100 Sobic010G274900--Sobic001G477600 Sobic010G274900--Sobic003G367200 Sobic003G350300 Sobic003G350300 Sobic010G274900--Sobic003G350300 Sobic010G274900--Sobic008G136400 Sobic010G274900--Sobic010G166500 Sobic006G275200 Sobic006G275200 Sobic010G274900--Sobic006G275200 Sobic009G008900 Sobic009G008900 Sobic010G274900--Sobic009G008900 Sobic007G015600 Sobic007G015600 Sobic010G274900--Sobic007G015600 Sobic003G357300 Sobic003G357300 Sobic010G274900--Sobic003G357300 Sobic003G364300--Sobic010G156500 Sobic009G231000 Sobic009G231000 Sobic003G364300--Sobic009G231000 Sobic003G364300--Sobic002G338500 Sobic003G364000 Sobic003G364000 Sobic003G364300--Sobic003G364000 Sobic003G364300--Sobic007G008100 Sobic003G364300--Sobic002G042000 Sobic003G382600 Sobic003G382600 Sobic003G364300--Sobic003G382600 Sobic001G054500 Sobic001G054500 Sobic003G364300--Sobic001G054500 Sobic003G364300--Sobic002G302500 Sobic010G156500--Sobic003G364300 Sobic010G156500--Sobic002G338500 Sobic010G156500--Sobic003G364000 Sobic010G156500--Sobic003G382600 Sobic005G213500 Sobic005G213500 Sobic010G156500--Sobic005G213500 Sobic001G279500 Sobic001G279500 Sobic010G156500--Sobic001G279500 Sobic010G156500--Sobic002G302500 Sobic003G280200 Sobic003G280200 Sobic010G156500--Sobic003G280200 Sobic010G156500--Sobic009G231000 Sobic001G477600--Sobic001G138600 Sobic001G477600--Sobic001G112200 Sobic001G477600--Sobic003G369100 Sobic002G336600 Sobic002G336600 Sobic001G477600--Sobic002G336600 Sobic003G382800 Sobic003G382800 Sobic001G477600--Sobic003G382800 Sobic001G477600--Sobic007G074000 Sobic001G477600--Sobic003G345100 Sobic005G099000 Sobic005G099000 Sobic001G477600--Sobic005G099000 Sobic004G141200 Sobic004G141200 Sobic001G477600--Sobic004G141200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.