Gene annotation
Transcriptome id Sobic.004G169300.1
Synonym Sb04g022080, PUB22
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
U-box domain-containing protein, putative, expressed
UniProt C5XU24
Pfam PF04564
Panther DB PTHR22849 PTHR22849:SF49
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016567; protein ubiquitination GO:0004842ubiquitin-protein transferase activity


Orthologs (automatic annotation)
TAIR AT2G35930 : plant U-box 23
RAP-DB (Rice) LOC_Os02g33590.1 : U-box domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a009231 , Zm00025a020586
Brachypodium -
Barley HORVU6Hr1G089560.1 , HORVU6Hr1G089560.2 , HORVU0Hr1G003810.1 , HORVU0Hr1G003810.2 , HORVU0Hr1G003810.3 , HORVU0Hr1G003810.4 , HORVU6Hr1G089590.1 , HORVU6Hr1G089590.2 , HORVU6Hr1G034250.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G066200 expressed protein -
2 Sobic.009G200566 - -
3 Sobic.008G139600 lectin-like receptor kinase, putative, expressed -
4 Sobic.010G166500 amino acid transporter, putative, expressed -
5 Sobic.008G158800 LTPL112 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
6 Sobic.006G101300 expressed protein -
7 Sobic.009G145700 peroxidase precursor, putative, expressed K00430: peroxidase
8 Sobic.001G280800 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
9 Sobic.002G323300 ankyrin repeat family protein, putative, expressed -
10 Sobic.005G177600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed K01183: chitinase
11 Sobic.001G112200 LTPL118 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
12 Sobic.002G042000 gibberellin receptor GID1L2, putative, expressed -
13 Sobic.003G313100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@helix-loop-helix DNA-binding domain containing protein, expressed -
14 Sobic.004G109900 zinc finger, C3HC4 type domain containing protein, expressed -
15 Sobic.009G145600 peroxidase precursor, putative, expressed K00430: peroxidase
16 Sobic.006G101100 expressed protein -
17 Sobic.003G418500 OsGrx_C6 - glutaredoxin subgroup III, expressed K03676: grxC, GLRX, glutaredoxin 3
18 Sobic.008G066401 - -
19 Sobic.009G069800 Hexokinase-7(PubMedID : 26186930)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Hexokinase 1 HXK1 (Os)(PubMedID : 27208977)@hexokinase, putative, expressed K00844: hexokinase
20 Sobic.010G225251 - -


Gene co-expression network
sample Sobic004G169300 Sobic004G169300 Sobic008G066200 Sobic008G066200 Sobic004G169300--Sobic008G066200 Sobic009G200566 Sobic009G200566 Sobic004G169300--Sobic009G200566 Sobic008G139600 Sobic008G139600 Sobic004G169300--Sobic008G139600 Sobic010G166500 Sobic010G166500 Sobic004G169300--Sobic010G166500 Sobic008G158800 Sobic008G158800 Sobic004G169300--Sobic008G158800 Sobic006G101300 Sobic006G101300 Sobic004G169300--Sobic006G101300 Sobic009G145700 Sobic009G145700 Sobic004G169300--Sobic009G145700 Sobic001G280800 Sobic001G280800 Sobic004G169300--Sobic001G280800 Sobic002G323300 Sobic002G323300 Sobic004G169300--Sobic002G323300 Sobic006G008000 Sobic006G008000 Sobic008G066200--Sobic006G008000 Sobic002G012500 Sobic002G012500 Sobic008G066200--Sobic002G012500 Sobic008G066200--Sobic009G145700 Sobic003G079200 Sobic003G079200 Sobic008G066200--Sobic003G079200 Sobic009G145600 Sobic009G145600 Sobic008G066200--Sobic009G145600 Sobic008G066401 Sobic008G066401 Sobic008G066200--Sobic008G066401 Sobic008G022000 Sobic008G022000 Sobic008G066200--Sobic008G022000 Sobic002G012300 Sobic002G012300 Sobic008G066200--Sobic002G012300 Sobic001G188800 Sobic001G188800 Sobic008G066200--Sobic001G188800 Sobic009G200566--Sobic009G145700 Sobic009G200566--Sobic009G145600 Sobic001G112200 Sobic001G112200 Sobic009G200566--Sobic001G112200 Sobic009G200566--Sobic008G158800 Sobic009G200566--Sobic008G066401 Sobic009G184100 Sobic009G184100 Sobic009G200566--Sobic009G184100 Sobic004G245700 Sobic004G245700 Sobic009G200566--Sobic004G245700 Sobic009G200566--Sobic008G066200 Sobic002G055700 Sobic002G055700 Sobic009G200566--Sobic002G055700 Sobic006G054800 Sobic006G054800 Sobic008G139600--Sobic006G054800 Sobic004G321300 Sobic004G321300 Sobic008G139600--Sobic004G321300 Sobic008G139600--Sobic001G112200 Sobic004G237800 Sobic004G237800 Sobic008G139600--Sobic004G237800 Sobic008G139600--Sobic009G145700 Sobic008G139600--Sobic002G055700 Sobic009G184000 Sobic009G184000 Sobic008G139600--Sobic009G184000 Sobic003G043500 Sobic003G043500 Sobic008G139600--Sobic003G043500 Sobic008G139600--Sobic009G145600 Sobic002G389400 Sobic002G389400 Sobic010G166500--Sobic002G389400 Sobic010G166500--Sobic001G112200 Sobic009G069800 Sobic009G069800 Sobic010G166500--Sobic009G069800 Sobic002G302500 Sobic002G302500 Sobic010G166500--Sobic002G302500 Sobic010G166500--Sobic004G321300 Sobic010G274900 Sobic010G274900 Sobic010G166500--Sobic010G274900 Sobic003G364300 Sobic003G364300 Sobic010G166500--Sobic003G364300 Sobic010G156500 Sobic010G156500 Sobic010G166500--Sobic010G156500 Sobic001G477600 Sobic001G477600 Sobic010G166500--Sobic001G477600 Sobic008G158800--Sobic009G200566 Sobic008G158800--Sobic008G066200 Sobic004G109900 Sobic004G109900 Sobic008G158800--Sobic004G109900 Sobic008G158800--Sobic008G022000 Sobic008G158800--Sobic006G008000 Sobic003G426600 Sobic003G426600 Sobic008G158800--Sobic003G426600 Sobic008G158800--Sobic004G169300 Sobic008G158800--Sobic009G145700 Sobic003G418500 Sobic003G418500 Sobic008G158800--Sobic003G418500 Sobic006G234900 Sobic006G234900 Sobic006G101300--Sobic006G234900 Sobic006G101100 Sobic006G101100 Sobic006G101300--Sobic006G101100 Sobic002G042000 Sobic002G042000 Sobic006G101300--Sobic002G042000 Sobic006G026500 Sobic006G026500 Sobic006G101300--Sobic006G026500 Sobic006G101300--Sobic008G066200 Sobic006G101300--Sobic004G169300 Sobic007G008000 Sobic007G008000 Sobic006G101300--Sobic007G008000 Sobic006G101300--Sobic008G022000 Sobic006G101300--Sobic003G418500 Sobic009G145700--Sobic009G145600 Sobic009G145700--Sobic008G066401 Sobic009G145700--Sobic008G066200 Sobic009G145700--Sobic006G008000 Sobic009G145700--Sobic001G112200 Sobic003G043600 Sobic003G043600 Sobic009G145700--Sobic003G043600 Sobic009G145700--Sobic003G043500 Sobic009G145700--Sobic009G184000 Sobic009G145700--Sobic003G079200 Sobic010G198600 Sobic010G198600 Sobic001G280800--Sobic010G198600 Sobic004G336500 Sobic004G336500 Sobic001G280800--Sobic004G336500 Sobic001G279300 Sobic001G279300 Sobic001G280800--Sobic001G279300 Sobic001G280800--Sobic009G069800 Sobic004G004400 Sobic004G004400 Sobic001G280800--Sobic004G004400 Sobic010G225251 Sobic010G225251 Sobic001G280800--Sobic010G225251 Sobic001G280800--Sobic009G145700 Sobic001G280800--Sobic008G066401 Sobic001G280800--Sobic004G109900 Sobic002G323300--Sobic009G069800 Sobic002G323300--Sobic004G336500 Sobic001G115300 Sobic001G115300 Sobic002G323300--Sobic001G115300 Sobic002G323300--Sobic002G389400 Sobic002G323300--Sobic004G169300 Sobic002G323300--Sobic010G166500 Sobic003G367200 Sobic003G367200 Sobic002G323300--Sobic003G367200 Sobic002G323300--Sobic001G280800 Sobic002G323300--Sobic004G321300
Octagon: transcription factors


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