Gene annotation
Transcriptome id Sobic.002G323300.1,Sobic.002G323300.2
Synonym Sb02g035080
Functional annotation ankyrin repeat family protein, putative, expressed
UniProt C5XA51 , C5XA36
Pfam PF12796 PF13857 PF13962 PF13962 PF13857 PF12796
Panther DB PTHR24177:SF58 PTHR24177 PTHR24177 PTHR24177:SF58
NCBI CDD KOG4412; 26S proteasome regulatory complex, subunit PSMD10
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G03670 : ankyrin repeat family protein
RAP-DB (Rice) LOC_Os07g34390.1 : ankyrin repeat family protein, putative, expressed
MaizeGDB (Corn) Zm00025a048253
Brachypodium KQK15939 , KQK15938 , KQK15937 , KQK15936 , KQK15940
Barley HORVU2Hr1G045370.1 , HORVU2Hr1G045370.3 , HORVU2Hr1G045370.2 , HORVU2Hr1G045370.5 , HORVU2Hr1G045370.4 , HORVU2Hr1G045370.7 , HORVU2Hr1G045370.6 , HORVU2Hr1G045370.9 , HORVU2Hr1G045370.8 , HORVU2Hr1G045370.15 , HORVU2Hr1G045370.14 , HORVU2Hr1G045370.17 , HORVU2Hr1G045370.16 , HORVU2Hr1G045370.11 , HORVU2Hr1G045370.10 , HORVU2Hr1G045370.13 , HORVU2Hr1G045370.12 , HORVU2Hr1G045370.19 , HORVU2Hr1G045370.18
Wheat TraesCS2B02G244900 , TraesCS2D02G224000 , TraesCS2D02G224000 , TraesCS2D02G224000 , TraesCS2D02G224000 , TraesCS2D02G224000 , TraesCS2A02G219300 , TraesCS2A02G219300 , TraesCS2A02G219300 , TraesCS2A02G219300 , TraesCS2B02G244900 , TraesCS2B02G244900 , TraesCS2B02G244900 , TraesCS2B02G244900 , TraesCS2B02G244900
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G323300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G069800 Hexokinase-7(PubMedID : 26186930)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Hexokinase 1 HXK1 (Os)(PubMedID : 27208977)@hexokinase, putative, expressed K00844: hexokinase
2 Sobic.004G336500 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@OsIAA9 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
3 Sobic.001G115300 RNA recognition motif containing protein, putative, expressed -
4 Sobic.002G389400 OsRCI2-10 - Hydrophobic protein LTI6A, expressed -
5 Sobic.004G169300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@U-box domain-containing protein, putative, expressed -
6 Sobic.010G166500 amino acid transporter, putative, expressed -
7 Sobic.003G367200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed K19040: E3 ubiquitin-protein ligase ATL10/75/76/77/78
8 Sobic.001G280800 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
9 Sobic.004G321300 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
10 Sobic.007G197600 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
11 Sobic.007G008100 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
12 Sobic.008G139600 lectin-like receptor kinase, putative, expressed -
13 Sobic.002G224500 down-regulated TF in developmental senescence(PubMedID : 27586543)@bHelix-loop-helix transcription factor, putative, expressed -
14 Sobic.010G198600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.007G195800 uncharacterized protein family UPF0016 domain containing protein, expressed -
16 Sobic.003G138300 expressed protein -
17 Sobic.009G154200 MYB family transcription factor, putative, expressed -
18 Sobic.002G261100 expressed protein -
19 Sobic.006G046900 expressed protein -
20 Sobic.002G042000 gibberellin receptor GID1L2, putative, expressed -


Gene co-expression network
sample Sobic002G323300 Sobic002G323300 Sobic009G069800 Sobic009G069800 Sobic002G323300--Sobic009G069800 Sobic004G336500 Sobic004G336500 Sobic002G323300--Sobic004G336500 Sobic001G115300 Sobic001G115300 Sobic002G323300--Sobic001G115300 Sobic002G389400 Sobic002G389400 Sobic002G323300--Sobic002G389400 Sobic004G169300 Sobic004G169300 Sobic002G323300--Sobic004G169300 Sobic010G166500 Sobic010G166500 Sobic002G323300--Sobic010G166500 Sobic003G367200 Sobic003G367200 Sobic002G323300--Sobic003G367200 Sobic001G280800 Sobic001G280800 Sobic002G323300--Sobic001G280800 Sobic004G321300 Sobic004G321300 Sobic002G323300--Sobic004G321300 Sobic009G069800--Sobic004G336500 Sobic007G008100 Sobic007G008100 Sobic009G069800--Sobic007G008100 Sobic010G225251 Sobic010G225251 Sobic009G069800--Sobic010G225251 Sobic002G042000 Sobic002G042000 Sobic009G069800--Sobic002G042000 Sobic009G069800--Sobic001G280800 Sobic001G477600 Sobic001G477600 Sobic009G069800--Sobic001G477600 Sobic004G236100 Sobic004G236100 Sobic009G069800--Sobic004G236100 Sobic009G069800--Sobic010G166500 Sobic003G041600 Sobic003G041600 Sobic009G069800--Sobic003G041600 Sobic004G336500--Sobic009G069800 Sobic004G336500--Sobic003G367200 Sobic001G169500 Sobic001G169500 Sobic004G336500--Sobic001G169500 Sobic004G336500--Sobic007G008100 Sobic001G112200 Sobic001G112200 Sobic004G336500--Sobic001G112200 Sobic004G336500--Sobic010G225251 Sobic003G382800 Sobic003G382800 Sobic004G336500--Sobic003G382800 Sobic004G336500--Sobic001G280800 Sobic001G138600 Sobic001G138600 Sobic004G336500--Sobic001G138600 Sobic001G115300--Sobic002G323300 Sobic006G137800 Sobic006G137800 Sobic001G115300--Sobic006G137800 Sobic009G231000 Sobic009G231000 Sobic001G115300--Sobic009G231000 Sobic007G195800 Sobic007G195800 Sobic001G115300--Sobic007G195800 Sobic002G366600 Sobic002G366600 Sobic001G115300--Sobic002G366600 Sobic001G115300--Sobic002G389400 Sobic003G357100 Sobic003G357100 Sobic001G115300--Sobic003G357100 Sobic002G329800 Sobic002G329800 Sobic001G115300--Sobic002G329800 Sobic001G115300--Sobic003G367200 Sobic002G389400--Sobic001G112200 Sobic009G184000 Sobic009G184000 Sobic002G389400--Sobic009G184000 Sobic004G171400 Sobic004G171400 Sobic002G389400--Sobic004G171400 Sobic002G389400--Sobic003G367200 Sobic002G389400--Sobic004G321300 Sobic002G389400--Sobic010G225251 Sobic002G389400--Sobic004G336500 Sobic002G389400--Sobic010G166500 Sobic002G389400--Sobic001G138600 Sobic008G066200 Sobic008G066200 Sobic004G169300--Sobic008G066200 Sobic009G200566 Sobic009G200566 Sobic004G169300--Sobic009G200566 Sobic008G139600 Sobic008G139600 Sobic004G169300--Sobic008G139600 Sobic004G169300--Sobic010G166500 Sobic008G158800 Sobic008G158800 Sobic004G169300--Sobic008G158800 Sobic006G101300 Sobic006G101300 Sobic004G169300--Sobic006G101300 Sobic009G145700 Sobic009G145700 Sobic004G169300--Sobic009G145700 Sobic004G169300--Sobic001G280800 Sobic004G169300--Sobic002G323300 Sobic010G166500--Sobic002G389400 Sobic010G166500--Sobic001G112200 Sobic010G166500--Sobic009G069800 Sobic002G302500 Sobic002G302500 Sobic010G166500--Sobic002G302500 Sobic010G166500--Sobic004G321300 Sobic010G274900 Sobic010G274900 Sobic010G166500--Sobic010G274900 Sobic003G364300 Sobic003G364300 Sobic010G166500--Sobic003G364300 Sobic010G156500 Sobic010G156500 Sobic010G166500--Sobic010G156500 Sobic010G166500--Sobic001G477600 Sobic003G367200--Sobic004G336500 Sobic006G275200 Sobic006G275200 Sobic003G367200--Sobic006G275200 Sobic003G086600 Sobic003G086600 Sobic003G367200--Sobic003G086600 Sobic003G367200--Sobic003G382800 Sobic001G397200 Sobic001G397200 Sobic003G367200--Sobic001G397200 Sobic004G280200 Sobic004G280200 Sobic003G367200--Sobic004G280200 Sobic007G015600 Sobic007G015600 Sobic003G367200--Sobic007G015600 Sobic001G140900 Sobic001G140900 Sobic003G367200--Sobic001G140900 Sobic003G369100 Sobic003G369100 Sobic003G367200--Sobic003G369100 Sobic010G198600 Sobic010G198600 Sobic001G280800--Sobic010G198600 Sobic001G280800--Sobic004G336500 Sobic001G279300 Sobic001G279300 Sobic001G280800--Sobic001G279300 Sobic001G280800--Sobic009G069800 Sobic004G004400 Sobic004G004400 Sobic001G280800--Sobic004G004400 Sobic001G280800--Sobic010G225251 Sobic001G280800--Sobic009G145700 Sobic008G066401 Sobic008G066401 Sobic001G280800--Sobic008G066401 Sobic004G109900 Sobic004G109900 Sobic001G280800--Sobic004G109900 Sobic004G237800 Sobic004G237800 Sobic004G321300--Sobic004G237800 Sobic009G159400 Sobic009G159400 Sobic004G321300--Sobic009G159400 Sobic008G136400 Sobic008G136400 Sobic004G321300--Sobic008G136400 Sobic004G321300--Sobic008G139600 Sobic001G038900 Sobic001G038900 Sobic004G321300--Sobic001G038900 Sobic002G055700 Sobic002G055700 Sobic004G321300--Sobic002G055700 Sobic004G321300--Sobic001G140900 Sobic005G091500 Sobic005G091500 Sobic004G321300--Sobic005G091500 Sobic003G345100 Sobic003G345100 Sobic004G321300--Sobic003G345100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.