Gene annotation
Transcriptome id Sobic.007G197600.1
Synonym ARA-4, ATRABA5C, ARA4, RABA5C, Sb07g026600, ATRAB11F
Functional annotation ras-related protein, putative, expressed
UniProt A0A1Z5RAX1
Pfam PF00025
Panther DB PTHR24073 PTHR24073:SF394
NCBI CDD KOG0087; GTPase Rab11/YPT3, small G protein superfamily
KEGG Orthology K07904; Ras-related protein Rab-11A
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT2G43130 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os08g41340.1 : ras-related protein, putative, expressed
MaizeGDB (Corn) Zm00025a036613 , Zm00025a001034 , Zm00025a005207 , Zm00025a018479 , Zm00025a044575 , Zm00025a013755 , Zm00025a053218
Brachypodium KQK04867 , KQK17534 , KQK17252 , KQJ99067 , PNT64397
Barley HORVU7Hr1G052840.4 , HORVU7Hr1G052840.2 , HORVU7Hr1G052840.3 , HORVU7Hr1G052840.1 , HORVU7Hr1G101140.4 , HORVU7Hr1G101140.5 , HORVU7Hr1G101140.6 , HORVU7Hr1G101140.7 , HORVU7Hr1G101140.1 , HORVU7Hr1G101140.2 , HORVU7Hr1G101140.3
Wheat TraesCS7A02G445600 , TraesCS7A02G445600 , TraesCS1B02G152100 , TraesCS1D02G136900 , TraesCS1D02G405900 , TraesCS5D02G321800 , TraesCS7B02G345100 , TraesCS7D02G254400 , TraesCS7A02G256000 , TraesCS1A02G398400 , TraesCS1B02G426300 , TraesCS5B02G316300 , TraesCS7B02G152600 , TraesCS1A02G131500 , TraesCS1A02G131500
Populus -


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cDNA sequences
Sobic.007G197600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G159200 guanylyl cyclase, putative, expressed -
2 Sobic.008G139600 lectin-like receptor kinase, putative, expressed -
3 Sobic.007G008100 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
4 Sobic.010G259900 ribosomal protein L7Ae, putative, expressed K02908: RP-L30e, large subunit ribosomal protein L30e
5 Sobic.004G321300 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
6 Sobic.006G157500 zinc finger, C3HC4 type domain containing protein, expressed K10666: E3 ubiquitin-protein ligase RNF5
7 Sobic.003G360000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@transferase family protein, putative, expressed -
8 Sobic.002G323300 ankyrin repeat family protein, putative, expressed -
9 Sobic.004G203700 ubiquitin family protein, putative, expressed -
10 Sobic.001G477600 zinc finger protein, putative, expressed -
11 Sobic.010G260100 ribosomal protein L7Ae, putative, expressed K02908: RP-L30e, large subunit ribosomal protein L30e
12 Sobic.003G393700 zinc finger, RING-type, putative, expressed -
13 Sobic.009G168900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed -
14 Sobic.001G112200 LTPL118 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
15 Sobic.002G330000 core histone H2A/H2B/H3/H4, putative, expressed K11251: histone H2A
16 Sobic.004G336500 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@OsIAA9 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
17 Sobic.009G069800 Hexokinase-7(PubMedID : 26186930)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Hexokinase 1 HXK1 (Os)(PubMedID : 27208977)@hexokinase, putative, expressed K00844: hexokinase
18 Sobic.001G036900 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
19 Sobic.004G306300 expressed protein -
20 Sobic.003G408100 ribosomal protein L13, putative, expressed K02873: RP-L13e, large subunit ribosomal protein L13e


Gene co-expression network
sample Sobic007G197600 Sobic007G197600 Sobic009G159200 Sobic009G159200 Sobic007G197600--Sobic009G159200 Sobic008G139600 Sobic008G139600 Sobic007G197600--Sobic008G139600 Sobic007G008100 Sobic007G008100 Sobic007G197600--Sobic007G008100 Sobic010G259900 Sobic010G259900 Sobic007G197600--Sobic010G259900 Sobic004G321300 Sobic004G321300 Sobic007G197600--Sobic004G321300 Sobic006G157500 Sobic006G157500 Sobic007G197600--Sobic006G157500 Sobic003G360000 Sobic003G360000 Sobic007G197600--Sobic003G360000 Sobic002G323300 Sobic002G323300 Sobic007G197600--Sobic002G323300 Sobic004G203700 Sobic004G203700 Sobic007G197600--Sobic004G203700 Sobic009G159200--Sobic007G197600 Sobic007G177100 Sobic007G177100 Sobic009G159200--Sobic007G177100 Sobic002G353800 Sobic002G353800 Sobic009G159200--Sobic002G353800 Sobic001G070800 Sobic001G070800 Sobic009G159200--Sobic001G070800 Sobic009G159200--Sobic006G157500 Sobic009G075900 Sobic009G075900 Sobic009G159200--Sobic009G075900 Sobic003G379800 Sobic003G379800 Sobic009G159200--Sobic003G379800 Sobic003G393700 Sobic003G393700 Sobic009G159200--Sobic003G393700 Sobic009G159200--Sobic004G203700 Sobic006G054800 Sobic006G054800 Sobic008G139600--Sobic006G054800 Sobic008G139600--Sobic004G321300 Sobic001G112200 Sobic001G112200 Sobic008G139600--Sobic001G112200 Sobic004G237800 Sobic004G237800 Sobic008G139600--Sobic004G237800 Sobic009G145700 Sobic009G145700 Sobic008G139600--Sobic009G145700 Sobic002G055700 Sobic002G055700 Sobic008G139600--Sobic002G055700 Sobic009G184000 Sobic009G184000 Sobic008G139600--Sobic009G184000 Sobic003G043500 Sobic003G043500 Sobic008G139600--Sobic003G043500 Sobic009G145600 Sobic009G145600 Sobic008G139600--Sobic009G145600 Sobic002G042000 Sobic002G042000 Sobic007G008100--Sobic002G042000 Sobic001G054500 Sobic001G054500 Sobic007G008100--Sobic001G054500 Sobic004G336500 Sobic004G336500 Sobic007G008100--Sobic004G336500 Sobic003G364300 Sobic003G364300 Sobic007G008100--Sobic003G364300 Sobic007G008000 Sobic007G008000 Sobic007G008100--Sobic007G008000 Sobic009G069800 Sobic009G069800 Sobic007G008100--Sobic009G069800 Sobic009G154200 Sobic009G154200 Sobic007G008100--Sobic009G154200 Sobic007G008100--Sobic008G139600 Sobic002G040900 Sobic002G040900 Sobic007G008100--Sobic002G040900 Sobic010G260100 Sobic010G260100 Sobic010G259900--Sobic010G260100 Sobic004G104300 Sobic004G104300 Sobic010G259900--Sobic004G104300 Sobic003G322400 Sobic003G322400 Sobic010G259900--Sobic003G322400 Sobic007G212600 Sobic007G212600 Sobic010G259900--Sobic007G212600 Sobic004G103800 Sobic004G103800 Sobic010G259900--Sobic004G103800 Sobic003G321700 Sobic003G321700 Sobic010G259900--Sobic003G321700 Sobic007G018300 Sobic007G018300 Sobic010G259900--Sobic007G018300 Sobic001G091801 Sobic001G091801 Sobic010G259900--Sobic001G091801 Sobic001G046300 Sobic001G046300 Sobic010G259900--Sobic001G046300 Sobic004G321300--Sobic004G237800 Sobic009G159400 Sobic009G159400 Sobic004G321300--Sobic009G159400 Sobic008G136400 Sobic008G136400 Sobic004G321300--Sobic008G136400 Sobic004G321300--Sobic008G139600 Sobic001G038900 Sobic001G038900 Sobic004G321300--Sobic001G038900 Sobic004G321300--Sobic002G055700 Sobic001G140900 Sobic001G140900 Sobic004G321300--Sobic001G140900 Sobic005G091500 Sobic005G091500 Sobic004G321300--Sobic005G091500 Sobic003G345100 Sobic003G345100 Sobic004G321300--Sobic003G345100 Sobic009G168900 Sobic009G168900 Sobic006G157500--Sobic009G168900 Sobic003G265200 Sobic003G265200 Sobic006G157500--Sobic003G265200 Sobic002G339100 Sobic002G339100 Sobic006G157500--Sobic002G339100 Sobic003G260300 Sobic003G260300 Sobic006G157500--Sobic003G260300 Sobic001G477600 Sobic001G477600 Sobic006G157500--Sobic001G477600 Sobic001G318700 Sobic001G318700 Sobic006G157500--Sobic001G318700 Sobic006G157500--Sobic009G184000 Sobic004G109900 Sobic004G109900 Sobic006G157500--Sobic004G109900 Sobic006G157500--Sobic001G112200 Sobic003G360000--Sobic007G197600 Sobic003G360000--Sobic006G157500 Sobic002G330000 Sobic002G330000 Sobic003G360000--Sobic002G330000 Sobic001G247300 Sobic001G247300 Sobic003G360000--Sobic001G247300 Sobic003G360000--Sobic003G265200 Sobic005G196800 Sobic005G196800 Sobic003G360000--Sobic005G196800 Sobic009G069700 Sobic009G069700 Sobic003G360000--Sobic009G069700 Sobic003G360000--Sobic008G139600 Sobic003G048000 Sobic003G048000 Sobic003G360000--Sobic003G048000 Sobic002G323300--Sobic009G069800 Sobic002G323300--Sobic004G336500 Sobic001G115300 Sobic001G115300 Sobic002G323300--Sobic001G115300 Sobic002G389400 Sobic002G389400 Sobic002G323300--Sobic002G389400 Sobic004G169300 Sobic004G169300 Sobic002G323300--Sobic004G169300 Sobic010G166500 Sobic010G166500 Sobic002G323300--Sobic010G166500 Sobic003G367200 Sobic003G367200 Sobic002G323300--Sobic003G367200 Sobic001G280800 Sobic001G280800 Sobic002G323300--Sobic001G280800 Sobic002G323300--Sobic004G321300 Sobic003G303100 Sobic003G303100 Sobic004G203700--Sobic003G303100 Sobic004G203700--Sobic002G055700 Sobic002G338500 Sobic002G338500 Sobic004G203700--Sobic002G338500 Sobic001G318500 Sobic001G318500 Sobic004G203700--Sobic001G318500 Sobic003G426400 Sobic003G426400 Sobic004G203700--Sobic003G426400 Sobic003G043600 Sobic003G043600 Sobic004G203700--Sobic003G043600 Sobic003G382600 Sobic003G382600 Sobic004G203700--Sobic003G382600 Sobic002G200600 Sobic002G200600 Sobic004G203700--Sobic002G200600 Sobic001G367600 Sobic001G367600 Sobic004G203700--Sobic001G367600
Octagon: transcription factors


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