Gene annotation
| Transcriptome id | Sobic.003G360000.1 |
|---|---|
| Synonym | Sb03g040180 |
| Functional annotation | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence (PubMedID : 27586543) transferase family protein, putative, expressed |
| UniProt | C5XPW4 |
| Pfam | PF02458 |
| Panther DB | PTHR31896 PTHR31896:SF5 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0016747; transferase activity, transferring acyl groups other than amino-acyl groups |
Orthologs (automatic annotation)
| TAIR | AT2G39980 : HXXXD-type acyl-transferase family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os01g63480.1 : transferase family protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a037202 , Zm00025a039614 , Zm00025a026820 |
| Brachypodium | KQK05984 , KQK10631 |
| Barley | HORVU4Hr1G089900.1 , HORVU1Hr1G073330.3 , HORVU1Hr1G073330.2 , HORVU1Hr1G073330.1 , HORVU4Hr1G024740.1 , HORVU3Hr1G085100.2 , HORVU3Hr1G085100.1 |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.003G360000 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.007G197600 | ras-related protein, putative, expressed | K07904: Ras-related protein Rab-11A |
| 2 | Sobic.006G157500 | zinc finger, C3HC4 type domain containing protein, expressed | K10666: E3 ubiquitin-protein ligase RNF5 |
| 3 | Sobic.002G330000 | core histone H2A/H2B/H3/H4, putative, expressed | K11251: histone H2A |
| 4 | Sobic.001G247300 | "Ca ATPase, IIB type"(PubMedID : 22196357)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@calcium-transporting ATPase, plasma membrane-type, putative, expressed | K01537: P-type Ca2+ transporter type 2C |
| 5 | Sobic.003G265200 | B3 DNA binding domain containing protein, expressed | K09287: RAV-like factor |
| 6 | Sobic.005G196800 | membrane protein, putative, expressed | - |
| 7 | Sobic.009G069700 | "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA and BR treatments"(PubMedID : 20499123)@Transcriptional repressor(PubMedID : 30367619)@OsIAA16 - Auxin-responsive Aux/IAA gene family member, expressed | K14484: auxin-responsive protein IAA |
| 8 | Sobic.008G139600 | lectin-like receptor kinase, putative, expressed | - |
| 9 | Sobic.003G048000 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein | - |
| 10 | Sobic.009G168900 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed | - |
| 11 | Sobic.007G177100 | "Syntelog of ZmMYB42, bind to the COMT1, CSE, 4CL2, F5H, and SbMYB42 promroter region"(PubMedID : 30387379)@MYB family transcription factor, putative, expressed | K09422: transcription factor MYB, plant |
| 12 | Sobic.010G259300 | transferase family protein, putative, expressed | - |
| 13 | Sobic.006G183400 | OsRhmbd11 - Putative Rhomboid homologue, expressed | - |
| 14 | Sobic.001G431500 | gibberellin receptor GID1L2, putative, expressed | - |
| 15 | Sobic.003G249800 | 60S ribosomal protein L18a-1, putative, expressed | - |
| 16 | Sobic.010G030401 | - | - |
| 17 | Sobic.003G050400 | phospholipase D, putative, expressed | K01115: phospholipase D1/2 |
| 18 | Sobic.009G184000 | ICE-like protease p20 domain containing protein, putative, expressed | - |
| 19 | Sobic.002G245800 | AN1-like zinc finger domain containing protein, expressed | - |
| 20 | Sobic.006G154500 | GEM, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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