Gene annotation
Transcriptome id Sobic.003G048000.1
Synonym Sb03g004190
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)" (PubMedID : 27586543)
expressed protein
UniProt C5XNC7
Pfam -
Panther DB PTHR34198
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G52720 : -
RAP-DB (Rice) LOC_Os01g07970.1 : expressed protein
MaizeGDB (Corn) Zm00025a023218 , Zm00025a043043 , Zm00025a043044
Brachypodium KQK02959 , KQK07243 , KQK07244 , KQK07245
Barley HORVU1Hr1G025940.2 , HORVU1Hr1G025940.1 , HORVU3Hr1G023750.2 , HORVU3Hr1G023750.3 , HORVU0Hr1G025440.1 , HORVU0Hr1G025440.2 , HORVU3Hr1G023800.1 , HORVU3Hr1G023750.1
Wheat -
Populus -


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cDNA sequences
Sobic.003G048000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G157500 zinc finger, C3HC4 type domain containing protein, expressed K10666: E3 ubiquitin-protein ligase RNF5
2 Sobic.009G168900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed -
3 Sobic.003G265200 B3 DNA binding domain containing protein, expressed K09287: RAV-like factor
4 Sobic.003G360000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@transferase family protein, putative, expressed -
5 Sobic.001G304700 proline oxidase, mitochondrial precursor, putative, expressed K00318: PRODH, fadM, proline dehydrogenase
6 Sobic.003G303100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@dynein light chain type 1 domain containing protein, expressed K10418: dynein light chain LC8-type
7 Sobic.005G196800 membrane protein, putative, expressed -
8 Sobic.006G154500 GEM, putative, expressed -
9 Sobic.002G330000 core histone H2A/H2B/H3/H4, putative, expressed K11251: histone H2A
10 Sobic.003G043600 BAHD acyl transferase(PubMedID : 28944535)@transferase family protein, putative, expressed -
11 Sobic.007G177100 "Syntelog of ZmMYB42, bind to the COMT1, CSE, 4CL2, F5H, and SbMYB42 promroter region"(PubMedID : 30387379)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
12 Sobic.002G336600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@nucleoside transporter, putative, expressed K15014: SLC29A1_2_3, solute carrier family 29 (equilibrative nucleoside transporter), member 1/2/3
13 Sobic.009G159200 guanylyl cyclase, putative, expressed -
14 Sobic.004G203700 ubiquitin family protein, putative, expressed -
15 Sobic.006G183400 OsRhmbd11 - Putative Rhomboid homologue, expressed -
16 Sobic.002G355100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@STE_PAK_Ste20_Slob_Wnk.5 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08867: WNK, WNK lysine deficient protein kinase
17 Sobic.007G197600 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
18 Sobic.003G426400 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
19 Sobic.003G050300 peroxidases (PubMedID : 28944535)@peroxidase precursor, putative, expressed K00430: peroxidase
20 Sobic.001G431500 gibberellin receptor GID1L2, putative, expressed -


Gene co-expression network
sample Sobic003G048000 Sobic003G048000 Sobic006G157500 Sobic006G157500 Sobic003G048000--Sobic006G157500 Sobic009G168900 Sobic009G168900 Sobic003G048000--Sobic009G168900 Sobic003G265200 Sobic003G265200 Sobic003G048000--Sobic003G265200 Sobic003G360000 Sobic003G360000 Sobic003G048000--Sobic003G360000 Sobic001G304700 Sobic001G304700 Sobic003G048000--Sobic001G304700 Sobic003G303100 Sobic003G303100 Sobic003G048000--Sobic003G303100 Sobic005G196800 Sobic005G196800 Sobic003G048000--Sobic005G196800 Sobic006G154500 Sobic006G154500 Sobic003G048000--Sobic006G154500 Sobic002G330000 Sobic002G330000 Sobic003G048000--Sobic002G330000 Sobic006G157500--Sobic009G168900 Sobic006G157500--Sobic003G265200 Sobic002G339100 Sobic002G339100 Sobic006G157500--Sobic002G339100 Sobic003G260300 Sobic003G260300 Sobic006G157500--Sobic003G260300 Sobic001G477600 Sobic001G477600 Sobic006G157500--Sobic001G477600 Sobic001G318700 Sobic001G318700 Sobic006G157500--Sobic001G318700 Sobic009G184000 Sobic009G184000 Sobic006G157500--Sobic009G184000 Sobic004G109900 Sobic004G109900 Sobic006G157500--Sobic004G109900 Sobic001G112200 Sobic001G112200 Sobic006G157500--Sobic001G112200 Sobic009G168900--Sobic006G157500 Sobic009G168900--Sobic009G184000 Sobic009G168900--Sobic001G318700 Sobic009G168900--Sobic001G112200 Sobic009G168900--Sobic003G260300 Sobic009G168900--Sobic003G303100 Sobic001G372100 Sobic001G372100 Sobic009G168900--Sobic001G372100 Sobic001G502400 Sobic001G502400 Sobic009G168900--Sobic001G502400 Sobic001G310600 Sobic001G310600 Sobic009G168900--Sobic001G310600 Sobic003G265200--Sobic006G157500 Sobic003G265200--Sobic003G260300 Sobic002G328400 Sobic002G328400 Sobic003G265200--Sobic002G328400 Sobic001G431500 Sobic001G431500 Sobic003G265200--Sobic001G431500 Sobic002G336600 Sobic002G336600 Sobic003G265200--Sobic002G336600 Sobic001G259900 Sobic001G259900 Sobic003G265200--Sobic001G259900 Sobic003G265200--Sobic009G184000 Sobic003G228900 Sobic003G228900 Sobic003G265200--Sobic003G228900 Sobic003G043600 Sobic003G043600 Sobic003G265200--Sobic003G043600 Sobic007G197600 Sobic007G197600 Sobic003G360000--Sobic007G197600 Sobic003G360000--Sobic006G157500 Sobic003G360000--Sobic002G330000 Sobic001G247300 Sobic001G247300 Sobic003G360000--Sobic001G247300 Sobic003G360000--Sobic003G265200 Sobic003G360000--Sobic005G196800 Sobic009G069700 Sobic009G069700 Sobic003G360000--Sobic009G069700 Sobic008G139600 Sobic008G139600 Sobic003G360000--Sobic008G139600 Sobic003G360000--Sobic003G048000 Sobic001G304700--Sobic005G196800 Sobic002G355100 Sobic002G355100 Sobic001G304700--Sobic002G355100 Sobic001G304700--Sobic002G336600 Sobic004G237800 Sobic004G237800 Sobic001G304700--Sobic004G237800 Sobic001G304700--Sobic003G043600 Sobic001G304700--Sobic003G303100 Sobic001G304700--Sobic001G247300 Sobic002G338500 Sobic002G338500 Sobic001G304700--Sobic002G338500 Sobic003G043500 Sobic003G043500 Sobic001G304700--Sobic003G043500 Sobic002G055700 Sobic002G055700 Sobic003G303100--Sobic002G055700 Sobic003G303100--Sobic001G318700 Sobic004G189400 Sobic004G189400 Sobic003G303100--Sobic004G189400 Sobic003G382600 Sobic003G382600 Sobic003G303100--Sobic003G382600 Sobic003G303100--Sobic004G237800 Sobic003G426400 Sobic003G426400 Sobic003G303100--Sobic003G426400 Sobic004G148200 Sobic004G148200 Sobic003G303100--Sobic004G148200 Sobic005G029200 Sobic005G029200 Sobic003G303100--Sobic005G029200 Sobic005G063100 Sobic005G063100 Sobic003G303100--Sobic005G063100 Sobic005G196800--Sobic001G247300 Sobic005G196800--Sobic004G237800 Sobic001G390300 Sobic001G390300 Sobic005G196800--Sobic001G390300 Sobic005G196800--Sobic002G338500 Sobic004G321300 Sobic004G321300 Sobic005G196800--Sobic004G321300 Sobic006G183400 Sobic006G183400 Sobic005G196800--Sobic006G183400 Sobic005G196800--Sobic003G382600 Sobic005G196800--Sobic003G043600 Sobic005G196800--Sobic002G055700 Sobic006G154400 Sobic006G154400 Sobic006G154500--Sobic006G154400 Sobic009G145500 Sobic009G145500 Sobic006G154500--Sobic009G145500 Sobic006G154500--Sobic003G303100 Sobic004G161751 Sobic004G161751 Sobic006G154500--Sobic004G161751 Sobic006G154500--Sobic003G043600 Sobic001G401100 Sobic001G401100 Sobic006G154500--Sobic001G401100 Sobic010G175800 Sobic010G175800 Sobic006G154500--Sobic010G175800 Sobic006G154500--Sobic002G338500 Sobic004G203700 Sobic004G203700 Sobic006G154500--Sobic004G203700 Sobic004G145801 Sobic004G145801 Sobic002G330000--Sobic004G145801 Sobic003G321700 Sobic003G321700 Sobic002G330000--Sobic003G321700 Sobic007G212600 Sobic007G212600 Sobic002G330000--Sobic007G212600 Sobic010G260100 Sobic010G260100 Sobic002G330000--Sobic010G260100 Sobic003G249800 Sobic003G249800 Sobic002G330000--Sobic003G249800 Sobic005G019700 Sobic005G019700 Sobic002G330000--Sobic005G019700 Sobic001G091801 Sobic001G091801 Sobic002G330000--Sobic001G091801 Sobic010G230700 Sobic010G230700 Sobic002G330000--Sobic010G230700 Sobic002G330000--Sobic001G390300
Octagon: transcription factors


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